Wall clock time and date at job start Sat Apr 11 2020 07:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99933 * 2 1 4 4 H 1.48496 * 109.47413 * 267.86881 * 3 2 1 5 5 H 1.48502 * 109.46874 * 27.86693 * 3 2 1 6 6 H 1.48499 * 109.46919 * 147.86690 * 3 2 1 7 7 C 1.38811 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00327 * 355.17765 * 7 2 1 9 9 N 1.36938 * 120.00132 * 175.17120 * 7 2 1 10 10 C 1.46972 * 120.59381 * 318.66174 * 9 7 2 11 11 C 1.53367 * 108.63290 * 235.19859 * 10 9 7 12 12 N 1.46957 * 108.63921 * 310.57818 * 11 10 9 13 13 C 1.34779 * 120.59634 * 235.20809 * 12 11 10 14 14 O 1.21604 * 119.99713 * 4.99866 * 13 12 11 15 15 C 1.47421 * 120.00196 * 184.72953 * 13 12 11 16 16 C 1.39976 * 120.61138 * 53.43570 * 15 13 12 17 17 C 1.38330 * 118.37129 * 180.02562 * 16 15 13 18 18 C 1.38381 * 119.50799 * 0.02562 * 17 16 15 19 19 N 1.31841 * 121.21367 * 359.97438 * 18 17 16 20 20 C 1.32431 * 121.77900 * 359.73940 * 19 18 17 21 21 N 1.38265 * 119.82555 * 180.26787 * 20 19 18 22 22 C 1.47016 * 110.99601 * 68.70985 * 21 20 19 23 23 C 1.53101 * 109.25581 * 177.60366 * 22 21 20 24 24 O 1.43018 * 109.26036 * 56.84638 * 23 22 21 25 25 C 1.43013 * 113.73680 * 301.33439 * 24 23 22 26 26 C 1.47013 * 111.00366 * 305.07299 * 21 20 19 27 27 C 1.46963 * 118.81214 * 55.47415 * 12 11 10 28 28 C 1.46967 * 120.59426 * 138.63383 * 9 7 2 29 29 H 0.97000 * 120.00565 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.60724 * 115.45432 * 10 9 7 31 31 H 1.08998 * 109.74949 * 355.03200 * 10 9 7 32 32 H 1.08998 * 109.60788 * 190.83124 * 11 10 9 33 33 H 1.09004 * 109.60886 * 70.32387 * 11 10 9 34 34 H 1.08005 * 120.81186 * 0.02562 * 16 15 13 35 35 H 1.08002 * 120.24726 * 180.02562 * 17 16 15 36 36 H 1.07995 * 119.38840 * 179.97438 * 18 17 16 37 37 H 1.08993 * 109.50850 * 297.53337 * 22 21 20 38 38 H 1.08993 * 109.50866 * 57.67086 * 22 21 20 39 39 H 1.09002 * 109.50606 * 296.91315 * 23 22 21 40 40 H 1.08998 * 109.54643 * 176.80393 * 23 22 21 41 41 H 1.09007 * 109.50582 * 298.72894 * 25 24 23 42 42 H 1.09004 * 109.54484 * 178.62743 * 25 24 23 43 43 H 1.08997 * 109.50432 * 302.32396 * 26 21 20 44 44 H 1.08994 * 109.50470 * 62.41318 * 26 21 20 45 45 H 1.08997 * 109.61150 * 64.27245 * 27 12 11 46 46 H 1.09003 * 109.61270 * 184.78261 * 27 12 11 47 47 H 1.09004 * 109.60560 * 244.54389 * 28 9 7 48 48 H 1.08998 * 109.60989 * 5.05671 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5428 2.0205 -1.3990 5 1 1.4257 2.6653 0.6544 6 1 3.5244 1.4536 0.7447 7 6 2.0103 -1.2021 -0.0005 8 1 1.4732 -2.1358 0.0777 9 7 3.3760 -1.2042 -0.1004 10 6 4.0596 -0.2911 -1.0271 11 6 4.9563 -1.1176 -1.9571 12 7 5.7647 -2.0325 -1.1391 13 6 7.1089 -2.0345 -1.2373 14 8 7.6685 -1.2141 -1.9390 15 6 7.9011 -3.0276 -0.4892 16 6 7.6247 -4.3947 -0.6067 17 6 8.3968 -5.2860 0.1166 18 6 9.4101 -4.8073 0.9283 19 7 9.6550 -3.5154 1.0256 20 6 8.9505 -2.6194 0.3514 21 7 9.2457 -1.2747 0.4795 22 6 10.5470 -0.9607 -0.1283 23 6 10.8062 0.5441 -0.0174 24 8 10.7425 0.9337 1.3572 25 6 9.4886 0.6431 1.9804 26 6 9.2160 -0.8607 1.8898 27 6 5.0808 -2.9495 -0.2165 28 6 4.1844 -2.1191 0.7177 29 1 -0.4851 0.8400 0.0004 30 1 4.6695 0.4141 -0.4625 31 1 3.3231 0.2536 -1.6179 32 1 5.6124 -0.4526 -2.5188 33 1 4.3375 -1.6926 -2.6460 34 1 6.8282 -4.7451 -1.2464 35 1 8.2101 -6.3475 0.0483 36 1 10.0114 -5.5047 1.4924 37 1 11.3336 -1.5050 0.3942 38 1 10.5379 -1.2520 -1.1786 39 1 10.0499 1.0865 -0.5849 40 1 11.7945 0.7742 -0.4155 41 1 8.6939 1.1884 1.4710 42 1 9.5232 0.9443 3.0274 43 1 8.2353 -1.0789 2.3125 44 1 9.9807 -1.4040 2.4447 45 1 4.4706 -3.6520 -0.7842 46 1 5.8190 -3.4946 0.3717 47 1 4.8032 -1.5440 1.4066 48 1 3.5284 -2.7841 1.2794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265746503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:00 Heat of formation + Delta-G solvation = 19.701047 kcal Electronic energy + Delta-G solvation = -32215.608393 eV Core-core repulsion = 28079.501482 eV Total energy + Delta-G solvation = -4136.106911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.24386 -39.56563 -38.92525 -36.98469 -35.89546 -34.08442 -32.82812 -31.50423 -31.34831 -31.10547 -30.51105 -27.52262 -26.91935 -24.75769 -24.18001 -23.67490 -23.26408 -22.62236 -20.98028 -20.59318 -19.24904 -17.89889 -17.45534 -16.98243 -16.48246 -16.33377 -15.77875 -15.71615 -15.39652 -15.17730 -15.15239 -14.64518 -14.51557 -14.24978 -14.14189 -13.91278 -13.74227 -13.61410 -13.35839 -12.86005 -12.60251 -12.55401 -12.43742 -12.21761 -11.96232 -11.69901 -11.51048 -11.15234 -11.02222 -10.84177 -10.50624 -10.30206 -10.28039 -10.09404 -10.07240 -9.81038 -9.66742 -9.53890 -9.20121 -8.78104 -8.75084 -8.37198 -6.82836 -6.03236 -3.59107 0.56964 0.86862 2.82874 3.15567 3.26965 3.27511 3.42439 3.44974 3.50389 3.72110 4.14218 4.44261 4.52774 4.55777 4.73524 4.76102 4.78306 4.85967 4.94107 5.01671 5.05428 5.15770 5.21878 5.24218 5.38365 5.47390 5.50212 5.52654 5.63821 5.67394 5.69079 5.71861 5.75298 5.81618 5.87556 5.96596 6.08252 6.13657 6.19283 6.39132 6.49630 6.56101 6.66284 6.86180 6.97758 7.00029 7.55138 7.69693 7.99371 8.28521 8.38862 8.83134 9.59968 10.02646 11.11320 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.003999 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.621447 B = 6999.675106 C = 8304.569926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.035 3.965 3 Si 0.893 3.107 4 H -0.284 1.284 5 H -0.302 1.302 6 H -0.267 1.267 7 C -0.271 4.271 8 H 0.082 0.918 9 N -0.605 5.605 10 C 0.111 3.889 11 C 0.099 3.901 12 N -0.594 5.594 13 C 0.569 3.431 14 O -0.528 6.528 15 C -0.139 4.139 16 C -0.042 4.042 17 C -0.179 4.179 18 C 0.125 3.875 19 N -0.512 5.512 20 C 0.334 3.666 21 N -0.479 5.479 22 C 0.033 3.967 23 C 0.066 3.934 24 O -0.385 6.385 25 C 0.065 3.935 26 C 0.024 3.976 27 C 0.086 3.914 28 C 0.137 3.863 29 H 0.265 0.735 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.159 0.841 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.026 0.974 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.327 -8.688 1.169 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.166 4.166 3 Si 0.723 3.277 4 H -0.212 1.212 5 H -0.230 1.230 6 H -0.192 1.192 7 C -0.400 4.400 8 H 0.099 0.901 9 N -0.330 5.330 10 C -0.015 4.015 11 C -0.025 4.025 12 N -0.327 5.327 13 C 0.356 3.644 14 O -0.405 6.405 15 C -0.146 4.146 16 C -0.068 4.068 17 C -0.198 4.198 18 C -0.035 4.035 19 N -0.224 5.224 20 C 0.105 3.895 21 N -0.202 5.202 22 C -0.093 4.093 23 C -0.011 4.011 24 O -0.304 6.304 25 C -0.012 4.012 26 C -0.103 4.103 27 C -0.038 4.038 28 C 0.010 3.990 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.176 0.824 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.044 0.956 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 20.891 -7.449 1.195 22.212 hybrid contribution -0.112 -0.153 -0.254 0.317 sum 20.779 -7.602 0.941 22.146 Atomic orbital electron populations 1.69739 1.05828 1.26845 1.52734 1.25582 0.95233 0.98182 0.97570 0.86800 0.79570 0.83608 0.77677 1.21162 1.22990 1.19236 1.18825 0.79446 0.93697 1.47998 0.90060 1.44178 1.03090 1.43229 1.42481 1.21809 0.94830 0.92740 0.92071 1.22228 0.93569 0.92998 0.93710 1.47912 1.04758 1.38678 1.41318 1.17730 0.81706 0.83575 0.81411 1.90740 1.70423 1.38412 1.40934 1.20702 0.98339 0.94597 1.00930 1.21786 0.97594 0.91253 0.96215 1.22079 0.97527 1.01319 0.98915 1.22715 0.94643 0.91239 0.94858 1.67818 1.28087 1.03438 1.23083 1.19592 0.89965 0.89065 0.90842 1.59991 1.32014 1.11083 1.17125 1.22739 0.88056 0.97792 1.00742 1.22663 1.02549 0.92788 0.83149 1.87963 1.35047 1.82739 1.24616 1.22668 0.86452 0.93365 0.98726 1.22805 1.02831 0.97306 0.87354 1.22577 0.96059 0.92560 0.92621 1.21386 0.93071 0.92749 0.91775 0.92542 0.94885 0.90252 0.89658 0.91234 0.83798 0.83923 0.82400 0.92855 0.89310 0.91662 0.88212 0.91908 0.88080 0.89723 0.92122 0.91128 0.90887 0.95567 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.21 13.97 55.49 0.78 -26.43 16 2 C 0.03 0.98 5.41 -17.43 -0.09 0.89 16 3 Si 0.89 22.18 24.39 -169.99 -4.15 18.03 16 4 H -0.28 -6.82 6.72 56.52 0.38 -6.44 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.27 -6.58 6.23 56.52 0.35 -6.23 16 7 C -0.27 -7.27 9.99 -15.06 -0.15 -7.42 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 9 N -0.61 -13.78 2.61 -171.77 -0.45 -14.22 16 10 C 0.11 2.39 4.31 -3.59 -0.02 2.37 16 11 C 0.10 1.80 6.60 -3.60 -0.02 1.77 16 12 N -0.59 -9.96 2.94 -173.49 -0.51 -10.47 16 13 C 0.57 9.49 6.84 -12.52 -0.09 9.41 16 14 O -0.53 -10.18 16.07 5.27 0.08 -10.10 16 15 C -0.14 -1.92 4.69 -104.65 -0.49 -2.41 16 16 C -0.04 -0.44 7.80 -38.90 -0.30 -0.74 16 17 C -0.18 -1.46 10.09 -39.49 -0.40 -1.86 16 18 C 0.12 1.14 11.16 -17.50 -0.20 0.95 16 19 N -0.51 -6.27 9.57 -12.20 -0.12 -6.39 16 20 C 0.33 4.60 5.34 -155.18 -0.83 3.77 16 21 N -0.48 -6.74 3.76 -172.67 -0.65 -7.39 16 22 C 0.03 0.42 5.53 -3.71 -0.02 0.40 16 23 C 0.07 0.76 7.01 37.21 0.26 1.03 16 24 O -0.39 -4.96 10.83 -35.23 -0.38 -5.34 16 25 C 0.06 0.77 7.01 37.21 0.26 1.03 16 26 C 0.02 0.30 5.42 -3.71 -0.02 0.28 16 27 C 0.09 1.30 5.80 -3.37 -0.02 1.28 16 28 C 0.14 2.55 6.69 -3.37 -0.02 2.53 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.03 0.74 6.72 -51.93 -0.35 0.39 16 31 H 0.08 1.81 5.07 -51.93 -0.26 1.54 16 32 H 0.09 1.54 6.99 -51.93 -0.36 1.18 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.14 1.29 7.73 -52.48 -0.41 0.89 16 35 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.05 0.67 8.07 -51.93 -0.42 0.25 16 38 H 0.09 1.16 8.13 -51.93 -0.42 0.73 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.09 8.13 -51.93 -0.42 0.66 16 44 H 0.06 0.77 7.82 -51.93 -0.41 0.36 16 45 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.07 0.94 5.20 -51.93 -0.27 0.67 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.08 1.37 7.93 -51.93 -0.41 0.96 16 LS Contribution 375.15 15.07 5.65 5.65 Total: -1.00 -33.38 375.15 -9.05 -42.43 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.17 Total: 0.95 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: -2.15 Total: 13.28 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -0.95 Total: -64.91 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.30 Total: -15.44 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.15 Total: 18.03 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.38 -9.05 -42.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265746503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.134 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds