Wall clock time and date at job start Sat Apr 11 2020 07:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99933 * 2 1 4 4 H 1.48496 * 109.47413 * 267.86881 * 3 2 1 5 5 H 1.48502 * 109.46874 * 27.86693 * 3 2 1 6 6 H 1.48499 * 109.46919 * 147.86690 * 3 2 1 7 7 C 1.38811 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00327 * 355.17765 * 7 2 1 9 9 N 1.36938 * 120.00132 * 175.17120 * 7 2 1 10 10 C 1.46972 * 120.59381 * 318.66174 * 9 7 2 11 11 C 1.53367 * 108.63290 * 235.19859 * 10 9 7 12 12 N 1.46957 * 108.63921 * 310.57818 * 11 10 9 13 13 C 1.34779 * 120.59634 * 235.20809 * 12 11 10 14 14 O 1.21604 * 119.99713 * 4.99866 * 13 12 11 15 15 C 1.47421 * 120.00196 * 184.72953 * 13 12 11 16 16 C 1.39976 * 120.61138 * 53.43570 * 15 13 12 17 17 C 1.38330 * 118.37129 * 180.02562 * 16 15 13 18 18 C 1.38381 * 119.50799 * 0.02562 * 17 16 15 19 19 N 1.31841 * 121.21367 * 359.97438 * 18 17 16 20 20 C 1.32431 * 121.77900 * 359.73940 * 19 18 17 21 21 N 1.38265 * 119.82555 * 180.26787 * 20 19 18 22 22 C 1.47016 * 110.99601 * 68.70985 * 21 20 19 23 23 C 1.53101 * 109.25581 * 177.60366 * 22 21 20 24 24 O 1.43018 * 109.26036 * 56.84638 * 23 22 21 25 25 C 1.43013 * 113.73680 * 301.33439 * 24 23 22 26 26 C 1.47013 * 111.00366 * 305.07299 * 21 20 19 27 27 C 1.46963 * 118.81214 * 55.47415 * 12 11 10 28 28 C 1.46967 * 120.59426 * 138.63383 * 9 7 2 29 29 H 0.97000 * 120.00565 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.60724 * 115.45432 * 10 9 7 31 31 H 1.08998 * 109.74949 * 355.03200 * 10 9 7 32 32 H 1.08998 * 109.60788 * 190.83124 * 11 10 9 33 33 H 1.09004 * 109.60886 * 70.32387 * 11 10 9 34 34 H 1.08005 * 120.81186 * 0.02562 * 16 15 13 35 35 H 1.08002 * 120.24726 * 180.02562 * 17 16 15 36 36 H 1.07995 * 119.38840 * 179.97438 * 18 17 16 37 37 H 1.08993 * 109.50850 * 297.53337 * 22 21 20 38 38 H 1.08993 * 109.50866 * 57.67086 * 22 21 20 39 39 H 1.09002 * 109.50606 * 296.91315 * 23 22 21 40 40 H 1.08998 * 109.54643 * 176.80393 * 23 22 21 41 41 H 1.09007 * 109.50582 * 298.72894 * 25 24 23 42 42 H 1.09004 * 109.54484 * 178.62743 * 25 24 23 43 43 H 1.08997 * 109.50432 * 302.32396 * 26 21 20 44 44 H 1.08994 * 109.50470 * 62.41318 * 26 21 20 45 45 H 1.08997 * 109.61150 * 64.27245 * 27 12 11 46 46 H 1.09003 * 109.61270 * 184.78261 * 27 12 11 47 47 H 1.09004 * 109.60560 * 244.54389 * 28 9 7 48 48 H 1.08998 * 109.60989 * 5.05671 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5428 2.0205 -1.3990 5 1 1.4257 2.6653 0.6544 6 1 3.5244 1.4536 0.7447 7 6 2.0103 -1.2021 -0.0005 8 1 1.4732 -2.1358 0.0777 9 7 3.3760 -1.2042 -0.1004 10 6 4.0596 -0.2911 -1.0271 11 6 4.9563 -1.1176 -1.9571 12 7 5.7647 -2.0325 -1.1391 13 6 7.1089 -2.0345 -1.2373 14 8 7.6685 -1.2141 -1.9390 15 6 7.9011 -3.0276 -0.4892 16 6 7.6247 -4.3947 -0.6067 17 6 8.3968 -5.2860 0.1166 18 6 9.4101 -4.8073 0.9283 19 7 9.6550 -3.5154 1.0256 20 6 8.9505 -2.6194 0.3514 21 7 9.2457 -1.2747 0.4795 22 6 10.5470 -0.9607 -0.1283 23 6 10.8062 0.5441 -0.0174 24 8 10.7425 0.9337 1.3572 25 6 9.4886 0.6431 1.9804 26 6 9.2160 -0.8607 1.8898 27 6 5.0808 -2.9495 -0.2165 28 6 4.1844 -2.1191 0.7177 29 1 -0.4851 0.8400 0.0004 30 1 4.6695 0.4141 -0.4625 31 1 3.3231 0.2536 -1.6179 32 1 5.6124 -0.4526 -2.5188 33 1 4.3375 -1.6926 -2.6460 34 1 6.8282 -4.7451 -1.2464 35 1 8.2101 -6.3475 0.0483 36 1 10.0114 -5.5047 1.4924 37 1 11.3336 -1.5050 0.3942 38 1 10.5379 -1.2520 -1.1786 39 1 10.0499 1.0865 -0.5849 40 1 11.7945 0.7742 -0.4155 41 1 8.6939 1.1884 1.4710 42 1 9.5232 0.9443 3.0274 43 1 8.2353 -1.0789 2.3125 44 1 9.9807 -1.4040 2.4447 45 1 4.4706 -3.6520 -0.7842 46 1 5.8190 -3.4946 0.3717 47 1 4.8032 -1.5440 1.4066 48 1 3.5284 -2.7841 1.2794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265746503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:00 Heat of formation + Delta-G solvation = -3.885798 kcal Electronic energy + Delta-G solvation = -32216.631195 eV Core-core repulsion = 28079.501482 eV Total energy + Delta-G solvation = -4137.129713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.19687 -40.76823 -39.91707 -38.51979 -36.83841 -35.69052 -33.97642 -33.33441 -32.31076 -32.26060 -31.67953 -29.02463 -28.00627 -25.93799 -25.21476 -25.14849 -24.57356 -23.71012 -22.46933 -21.54908 -20.61642 -19.04454 -18.73573 -18.11953 -17.88664 -17.31685 -17.11210 -16.96770 -16.61066 -16.32304 -16.12229 -16.03375 -15.91426 -15.63004 -15.38041 -15.14008 -14.81546 -14.66864 -14.62797 -14.25402 -14.06835 -13.92328 -13.57038 -13.47044 -13.44752 -12.90338 -12.64896 -12.53641 -12.46594 -12.33489 -12.09110 -11.84112 -11.78077 -11.65105 -11.24714 -11.01817 -10.91366 -10.75984 -10.59310 -10.05816 -9.89086 -9.68214 -8.69976 -8.20282 -5.72450 -0.28285 0.08668 1.27056 1.37252 1.44978 1.61746 1.96583 2.36123 2.36646 2.62208 2.80179 3.10291 3.20001 3.28651 3.53939 3.78563 3.85488 3.87941 3.98225 4.05398 4.06348 4.08446 4.11260 4.15659 4.24278 4.26876 4.35661 4.44051 4.46640 4.49666 4.56993 4.57395 4.68946 4.70061 4.80137 4.81514 4.85279 4.91282 4.96331 5.05533 5.11450 5.40152 5.47421 5.61811 5.91295 6.02281 6.08047 6.14248 6.40021 6.77829 6.87071 7.11172 7.51994 8.00270 8.97525 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.003999 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.621447 B = 6999.675106 C = 8304.569926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.017 4.017 3 Si 0.946 3.054 4 H -0.273 1.273 5 H -0.309 1.309 6 H -0.266 1.266 7 C -0.253 4.253 8 H 0.057 0.943 9 N -0.617 5.617 10 C 0.113 3.887 11 C 0.109 3.891 12 N -0.599 5.599 13 C 0.572 3.428 14 O -0.562 6.562 15 C -0.165 4.165 16 C -0.042 4.042 17 C -0.158 4.158 18 C 0.127 3.873 19 N -0.529 5.529 20 C 0.318 3.682 21 N -0.499 5.499 22 C 0.041 3.959 23 C 0.067 3.933 24 O -0.394 6.394 25 C 0.065 3.935 26 C 0.031 3.969 27 C 0.101 3.899 28 C 0.132 3.868 29 H 0.263 0.737 30 H 0.023 0.977 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.161 0.839 35 H 0.185 0.815 36 H 0.194 0.806 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.125 0.875 41 H 0.047 0.953 42 H 0.124 0.876 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.023 0.977 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.650 -11.036 1.601 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.213 4.213 3 Si 0.776 3.224 4 H -0.199 1.199 5 H -0.237 1.237 6 H -0.191 1.191 7 C -0.383 4.383 8 H 0.074 0.926 9 N -0.343 5.343 10 C -0.013 4.013 11 C -0.015 4.015 12 N -0.331 5.331 13 C 0.360 3.640 14 O -0.441 6.441 15 C -0.172 4.172 16 C -0.068 4.068 17 C -0.177 4.177 18 C -0.032 4.032 19 N -0.242 5.242 20 C 0.090 3.910 21 N -0.223 5.223 22 C -0.086 4.086 23 C -0.010 4.010 24 O -0.312 6.312 25 C -0.012 4.012 26 C -0.096 4.096 27 C -0.023 4.023 28 C 0.006 3.994 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.178 0.822 35 H 0.203 0.797 36 H 0.211 0.789 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.143 0.857 41 H 0.065 0.935 42 H 0.141 0.859 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.102 0.898 46 H 0.121 0.879 47 H 0.041 0.959 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 23.256 -9.825 1.630 25.299 hybrid contribution -0.765 0.401 -0.355 0.934 sum 22.492 -9.424 1.275 24.419 Atomic orbital electron populations 1.69855 1.07271 1.27382 1.55386 1.26146 0.95720 1.01041 0.98393 0.85931 0.78153 0.80217 0.78113 1.19929 1.23741 1.19101 1.18761 0.81309 0.92544 1.45647 0.92584 1.44286 1.02105 1.44108 1.43760 1.21712 0.94647 0.92842 0.92116 1.21954 0.93262 0.93129 0.93157 1.47965 1.05024 1.38649 1.41430 1.18179 0.81426 0.83545 0.80803 1.90714 1.70942 1.40033 1.42378 1.20552 0.98999 0.95358 1.02301 1.22053 0.98333 0.89973 0.96483 1.22507 0.95641 1.02955 0.96625 1.23444 0.94775 0.90593 0.94438 1.67856 1.28284 1.04685 1.23333 1.19611 0.90491 0.89193 0.91753 1.59979 1.32570 1.12149 1.17632 1.22654 0.87778 0.98124 1.00030 1.22740 1.03474 0.92147 0.82626 1.87949 1.35351 1.82836 1.25074 1.22740 0.85758 0.92935 0.99723 1.22733 1.02377 0.97489 0.87012 1.22498 0.96083 0.91695 0.92011 1.21562 0.93166 0.92417 0.92231 0.92735 0.95906 0.91834 0.89647 0.90440 0.82181 0.79723 0.78906 0.92797 0.90274 0.93218 0.85687 0.93464 0.85859 0.90337 0.92114 0.89814 0.87938 0.95877 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.42 13.97 21.65 0.30 -58.12 16 2 C -0.02 -0.95 5.41 84.86 0.46 -0.49 16 3 Si 0.95 46.60 24.39 68.60 1.67 48.27 16 4 H -0.27 -12.78 6.72 99.48 0.67 -12.11 16 5 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 6 H -0.27 -12.88 6.23 99.48 0.62 -12.26 16 7 C -0.25 -13.70 9.99 84.03 0.84 -12.87 16 8 H 0.06 3.29 8.06 -2.91 -0.02 3.27 16 9 N -0.62 -27.86 2.61 -697.34 -1.82 -29.68 16 10 C 0.11 4.79 4.31 86.41 0.37 5.16 16 11 C 0.11 3.90 6.60 86.42 0.57 4.47 16 12 N -0.60 -19.19 2.94 -821.06 -2.41 -21.60 16 13 C 0.57 18.46 6.84 86.66 0.59 19.05 16 14 O -0.56 -21.65 16.07 -4.04 -0.06 -21.72 16 15 C -0.17 -4.23 4.69 -19.88 -0.09 -4.32 16 16 C -0.04 -0.72 7.80 22.71 0.18 -0.54 16 17 C -0.16 -1.77 10.09 22.33 0.23 -1.55 16 18 C 0.13 1.76 11.16 84.73 0.95 2.71 16 19 N -0.53 -11.60 9.57 -192.52 -1.84 -13.45 16 20 C 0.32 8.27 5.34 133.64 0.71 8.99 16 21 N -0.50 -13.85 3.76 -700.22 -2.63 -16.49 16 22 C 0.04 1.01 5.53 86.31 0.48 1.49 16 23 C 0.07 1.54 7.01 72.02 0.50 2.05 16 24 O -0.39 -9.88 10.83 -148.98 -1.61 -11.50 16 25 C 0.07 1.53 7.01 72.01 0.50 2.04 16 26 C 0.03 0.76 5.42 86.31 0.47 1.23 16 27 C 0.10 2.79 5.80 86.56 0.50 3.30 16 28 C 0.13 4.74 6.69 86.56 0.58 5.32 16 29 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 30 H 0.02 1.02 6.72 -2.39 -0.02 1.01 16 31 H 0.06 2.89 5.07 -2.39 -0.01 2.88 16 32 H 0.09 3.06 6.99 -2.39 -0.02 3.04 16 33 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.16 2.18 7.73 -2.91 -0.02 2.15 16 35 H 0.19 0.57 8.06 -2.91 -0.02 0.54 16 36 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.05 1.31 8.07 -2.39 -0.02 1.29 16 38 H 0.08 2.08 8.13 -2.39 -0.02 2.06 16 39 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 43 H 0.08 1.99 8.13 -2.39 -0.02 1.97 16 44 H 0.06 1.48 7.82 -2.39 -0.02 1.46 16 45 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.10 2.29 5.20 -2.39 -0.01 2.27 16 47 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.08 2.81 7.93 -2.39 -0.02 2.80 16 Total: -1.00 -74.55 375.15 0.27 -74.29 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.84 Total: 13.97 kcal Atomic # 6 Polarization: 28.19 SS G_CDS: 7.84 Total: 36.03 kcal Atomic # 7 Polarization: -130.93 SS G_CDS: -8.41 Total: -139.34 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -1.68 Total: -33.22 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.67 Total: 48.27 kcal Total: -74.55 0.27 -74.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265746503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.401 kcal (2) G-P(sol) polarization free energy of solvation -74.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds