Wall clock time and date at job start Sat Apr 11 2020 07:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47053 * 113.62294 * 3 2 1 5 5 N 1.46505 * 109.47285 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99967 * 270.00359 * 5 4 3 7 7 C 1.50695 * 109.46712 * 269.99919 * 6 5 4 8 8 H 1.08004 * 120.00406 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99987 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00305 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99953 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46967 * 89.99642 * 11 9 7 13 13 H 1.48498 * 109.47274 * 209.99744 * 11 9 7 14 14 H 1.48493 * 109.46901 * 330.00019 * 11 9 7 15 15 C 1.34769 * 120.00152 * 89.99562 * 5 4 3 16 16 O 1.21282 * 120.00190 * 180.02562 * 15 5 4 17 17 C 1.50704 * 120.00099 * 0.02562 * 15 5 4 18 18 N 1.46899 * 109.47140 * 179.97438 * 17 15 5 19 19 C 1.46899 * 111.00454 * 66.04271 * 18 17 15 20 20 C 1.53002 * 109.47002 * 52.41408 * 19 18 17 21 21 O 1.42909 * 109.47011 * 65.55823 * 20 19 18 22 22 C 1.46906 * 110.99959 * 189.99793 * 18 17 15 23 23 C 1.50694 * 109.46936 * 161.42939 * 22 18 17 24 24 C 1.38673 * 120.41986 * 273.33496 * 23 22 18 25 25 C 1.38626 * 118.42111 * 180.24687 * 24 23 22 26 26 C 1.38224 * 119.16465 * 359.75270 * 25 24 23 27 27 N 1.31860 * 120.76153 * 359.97438 * 26 25 24 28 28 C 1.31892 * 121.72446 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47546 * 353.62592 * 3 2 1 30 30 H 1.08994 * 109.47282 * 233.62058 * 3 2 1 31 31 H 1.08998 * 109.47359 * 60.00146 * 4 3 2 32 32 H 1.09001 * 109.47224 * 299.99868 * 4 3 2 33 33 H 1.09000 * 109.46975 * 29.99450 * 6 5 4 34 34 H 1.08994 * 109.47272 * 149.99838 * 6 5 4 35 35 H 0.96996 * 120.00421 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.47400 * 59.99300 * 17 15 5 37 37 H 1.08996 * 109.46753 * 299.99651 * 17 15 5 38 38 H 1.09002 * 109.47311 * 172.41626 * 19 18 17 39 39 H 1.09004 * 109.46989 * 292.42089 * 19 18 17 40 40 H 1.09002 * 109.47382 * 185.55407 * 20 19 18 41 41 H 1.09001 * 109.47420 * 305.55880 * 20 19 18 42 42 H 0.96703 * 113.99896 * 180.02562 * 21 20 19 43 43 H 1.09002 * 109.46817 * 41.42815 * 22 18 17 44 44 H 1.09001 * 109.46848 * 281.42951 * 22 18 17 45 45 H 1.07998 * 120.78879 * 359.97438 * 24 23 22 46 46 H 1.08008 * 120.41933 * 179.73003 * 25 24 23 47 47 H 1.07998 * 119.62550 * 180.02562 * 26 25 24 48 48 H 1.07992 * 119.61531 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.5789 -1.3216 5 7 4.5828 0.5790 -1.3220 6 6 5.3153 1.7414 -0.8134 7 6 5.5661 2.7095 -1.9408 8 1 5.2154 2.4816 -2.9365 9 6 6.2434 3.8863 -1.7010 10 7 6.4627 4.7310 -2.6849 11 14 6.8494 4.2810 0.0213 12 1 8.2228 3.7445 0.1978 13 1 6.8643 5.7531 0.2156 14 1 5.9430 3.6590 1.0196 15 6 5.2566 -0.4902 -1.7899 16 8 6.4694 -0.4903 -1.7897 17 6 4.5032 -1.6858 -2.3133 18 7 5.4578 -2.7084 -2.7614 19 6 6.2235 -3.2462 -1.6290 20 6 5.2590 -3.7086 -0.5350 21 8 4.4888 -4.8128 -1.0145 22 6 4.7733 -3.7835 -3.4921 23 6 5.7772 -4.5514 -4.3126 24 6 6.1122 -4.1270 -5.5895 25 6 7.0366 -4.8676 -6.3097 26 6 7.5938 -5.9936 -5.7331 27 7 7.2556 -6.3645 -4.5138 28 6 6.3798 -5.6843 -3.7998 29 1 2.9718 -1.0204 0.1141 30 1 2.9711 0.6103 0.8273 31 1 2.7540 1.6001 -1.4358 32 1 2.7547 -0.0307 -2.1491 33 1 4.7263 2.2313 -0.0381 34 1 6.2678 1.4161 -0.3952 35 1 6.9395 5.5587 -2.5164 36 1 3.8766 -1.3818 -3.1518 37 1 3.8764 -2.0955 -1.5212 38 1 6.8239 -4.0916 -1.9652 39 1 6.8782 -2.4705 -1.2320 40 1 5.8264 -4.0158 0.3436 41 1 4.5919 -2.8889 -0.2684 42 1 3.8542 -5.1583 -0.3717 43 1 4.0194 -3.3522 -4.1508 44 1 4.2931 -4.4568 -2.7820 45 1 5.6602 -3.2431 -6.0146 46 1 7.3178 -4.5688 -7.3088 47 1 8.3151 -6.5758 -6.2873 48 1 6.1274 -6.0192 -2.8046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267898647.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:03 Heat of formation + Delta-G solvation = 6.350802 kcal Electronic energy + Delta-G solvation = -30859.726220 eV Core-core repulsion = 26723.040399 eV Total energy + Delta-G solvation = -4136.685821 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43910 -39.69452 -38.10822 -36.97028 -35.85632 -35.26912 -32.95701 -32.69362 -31.71044 -31.08057 -29.70488 -28.59937 -27.03226 -24.92436 -24.10178 -23.59768 -22.79466 -22.07355 -20.53323 -18.54070 -17.86993 -17.81873 -17.12227 -16.88525 -16.76042 -16.69932 -16.15412 -16.00923 -15.15829 -14.99628 -14.71651 -14.58812 -14.17176 -13.93407 -13.75407 -13.63307 -13.51793 -13.19309 -13.02533 -12.99838 -12.73189 -12.57469 -12.44845 -12.20019 -12.14051 -11.84003 -11.71297 -11.62214 -11.55599 -11.22932 -11.07440 -10.89989 -10.60158 -10.24165 -10.15313 -9.79492 -9.60909 -9.47025 -9.11517 -9.03791 -8.64681 -8.14537 -7.92564 -6.13864 -4.13574 1.07297 1.29175 2.59354 2.67718 3.15782 3.23415 3.28269 3.30977 3.38580 3.68628 3.94046 4.00398 4.26154 4.33593 4.44508 4.74306 4.75120 4.81188 4.88671 4.91417 4.95103 4.99983 5.04116 5.05383 5.16807 5.19253 5.27782 5.35138 5.37204 5.41096 5.55739 5.65900 5.73519 5.77625 5.94375 5.98200 6.10520 6.15163 6.32657 6.52143 6.69338 6.79849 6.96018 7.04763 7.17033 7.30682 7.44122 7.53171 7.94565 8.04472 8.39718 8.82441 8.90968 9.45448 10.99450 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.009574 B = 0.003296 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.018313 B = 8493.487563 C =10210.003252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.214 3.786 3 C -0.050 4.050 4 C 0.117 3.883 5 N -0.594 5.594 6 C 0.217 3.783 7 C -0.531 4.531 8 H 0.075 0.925 9 C 0.073 3.927 10 N -0.895 5.895 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.266 1.266 15 C 0.510 3.490 16 O -0.513 6.513 17 C 0.029 3.971 18 N -0.507 5.507 19 C 0.046 3.954 20 C 0.032 3.968 21 O -0.565 6.565 22 C 0.076 3.924 23 C -0.117 4.117 24 C -0.056 4.056 25 C -0.176 4.176 26 C 0.089 3.911 27 N -0.491 5.491 28 C 0.106 3.894 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.031 0.969 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.370 0.630 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.133 0.867 46 H 0.132 0.868 47 H 0.151 0.849 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.046 -19.676 1.728 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.104 4.104 3 C -0.091 4.091 4 C -0.010 4.010 5 N -0.327 5.327 6 C 0.096 3.904 7 C -0.570 4.570 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.533 5.533 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.296 3.704 16 O -0.387 6.387 17 C -0.101 4.101 18 N -0.230 5.230 19 C -0.082 4.082 20 C -0.047 4.047 21 O -0.372 6.372 22 C -0.052 4.052 23 C -0.119 4.119 24 C -0.083 4.083 25 C -0.195 4.195 26 C -0.068 4.068 27 N -0.199 5.199 28 C -0.051 4.051 29 H 0.121 0.879 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.132 0.868 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.218 0.782 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.151 0.849 46 H 0.150 0.850 47 H 0.168 0.832 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.899 -19.886 1.182 20.514 hybrid contribution -0.460 0.907 1.416 1.743 sum -5.359 -18.978 2.598 19.891 Atomic orbital electron populations 1.81231 1.12974 1.08959 1.08554 1.29037 0.95040 0.93062 0.93249 1.19886 0.81557 1.04736 1.02938 1.21330 0.81956 1.03572 0.94112 1.47899 1.04807 1.17492 1.62481 1.19700 0.92433 0.82886 0.95351 1.21302 1.37267 1.02218 0.96172 0.90644 1.24859 0.95221 0.95992 0.96858 1.69887 1.41219 1.10662 1.31558 0.86880 0.80137 0.77734 0.85065 1.19914 1.21137 1.19046 1.20220 0.88255 0.83519 0.78364 1.90658 1.13609 1.80771 1.53694 1.22211 0.94627 0.92303 1.01002 1.61754 1.25224 1.11494 1.24521 1.22607 0.95769 1.00787 0.89015 1.23153 0.94530 0.88378 0.98599 1.86492 1.56013 1.50789 1.43900 1.21485 0.93552 0.93164 0.96950 1.20773 0.99362 0.96555 0.95244 1.21544 0.95060 0.97962 0.93734 1.22137 0.98784 0.97067 1.01544 1.22702 0.97777 0.94676 0.91625 1.67695 1.13480 1.31655 1.07077 1.22758 0.91777 0.91457 0.99150 0.87941 0.86627 0.88421 0.90384 0.95103 0.94324 0.92508 0.88194 0.91896 0.90185 0.86791 0.93054 0.93187 0.78157 0.90679 0.88706 0.84866 0.85021 0.83192 0.82746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.91 18.54 42.15 0.78 -5.13 16 2 C 0.21 2.27 15.43 -20.76 -0.32 1.95 16 3 C -0.05 -0.43 6.03 -29.52 -0.18 -0.61 16 4 C 0.12 1.38 5.17 -4.04 -0.02 1.36 16 5 N -0.59 -9.83 2.46 -175.06 -0.43 -10.26 16 6 C 0.22 4.58 4.23 -5.19 -0.02 4.56 16 7 C -0.53 -14.09 9.94 -34.44 -0.34 -14.43 16 8 H 0.08 2.23 8.06 -52.48 -0.42 1.80 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 10 N -0.90 -26.61 13.96 55.43 0.77 -25.83 16 11 Si 0.87 20.29 27.47 -169.99 -4.67 15.62 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 14 H -0.27 -5.63 6.54 56.52 0.37 -5.26 16 15 C 0.51 8.54 7.44 -10.99 -0.08 8.46 16 16 O -0.51 -10.92 13.89 5.56 0.08 -10.84 16 17 C 0.03 0.35 3.59 -4.97 -0.02 0.33 16 18 N -0.51 -6.43 4.38 -237.51 -1.04 -7.47 16 19 C 0.05 0.56 5.42 -3.82 -0.02 0.54 16 20 C 0.03 0.28 6.74 37.16 0.25 0.53 16 21 O -0.56 -4.17 10.36 -35.23 -0.37 -4.54 16 22 C 0.08 0.80 5.02 -4.98 -0.02 0.77 16 23 C -0.12 -1.35 5.07 -104.49 -0.53 -1.88 16 24 C -0.06 -0.64 9.87 -39.28 -0.39 -1.02 16 25 C -0.18 -1.80 10.11 -39.44 -0.40 -2.20 16 26 C 0.09 0.97 11.18 -17.54 -0.20 0.77 16 27 N -0.49 -6.23 10.36 -13.25 -0.14 -6.36 16 28 C 0.11 1.26 9.45 -17.55 -0.17 1.09 16 29 H 0.10 0.66 7.22 -51.93 -0.38 0.28 16 30 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.10 1.27 8.07 -51.93 -0.42 0.85 16 32 H 0.08 0.77 6.44 -51.93 -0.33 0.43 16 33 H 0.03 0.61 7.13 -51.93 -0.37 0.24 16 34 H 0.04 0.88 6.85 -51.93 -0.36 0.53 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.10 1.10 7.10 -51.93 -0.37 0.74 16 37 H 0.06 0.58 4.77 -51.93 -0.25 0.33 16 38 H 0.08 0.99 5.99 -51.93 -0.31 0.68 16 39 H 0.11 1.70 6.05 -51.93 -0.31 1.38 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 0.41 5.86 -51.93 -0.30 0.11 16 42 H 0.37 1.32 9.12 45.62 0.42 1.73 16 43 H 0.07 0.73 7.73 -51.93 -0.40 0.33 16 44 H 0.10 0.93 4.52 -51.87 -0.23 0.70 16 45 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 46 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 47 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 48 H 0.16 1.68 7.78 -52.49 -0.41 1.27 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -35.56 393.78 -7.36 -42.92 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.73 Total: 3.79 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.55 Total: 2.17 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.05 Total: -55.05 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.29 Total: -15.38 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.67 Total: 15.62 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.56 -7.36 -42.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267898647.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.275 kcal (2) G-P(sol) polarization free energy of solvation -35.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds