Wall clock time and date at job start Sat Apr 11 2020 07:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47053 * 113.62294 * 3 2 1 5 5 N 1.46505 * 109.47285 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99967 * 270.00359 * 5 4 3 7 7 C 1.50695 * 109.46712 * 269.99919 * 6 5 4 8 8 H 1.08004 * 120.00406 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99987 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00305 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99953 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46967 * 89.99642 * 11 9 7 13 13 H 1.48498 * 109.47274 * 209.99744 * 11 9 7 14 14 H 1.48493 * 109.46901 * 330.00019 * 11 9 7 15 15 C 1.34769 * 120.00152 * 89.99562 * 5 4 3 16 16 O 1.21282 * 120.00190 * 180.02562 * 15 5 4 17 17 C 1.50704 * 120.00099 * 0.02562 * 15 5 4 18 18 N 1.46899 * 109.47140 * 179.97438 * 17 15 5 19 19 C 1.46899 * 111.00454 * 66.04271 * 18 17 15 20 20 C 1.53002 * 109.47002 * 52.41408 * 19 18 17 21 21 O 1.42909 * 109.47011 * 65.55823 * 20 19 18 22 22 C 1.46906 * 110.99959 * 189.99793 * 18 17 15 23 23 C 1.50694 * 109.46936 * 161.42939 * 22 18 17 24 24 C 1.38673 * 120.41986 * 273.33496 * 23 22 18 25 25 C 1.38626 * 118.42111 * 180.24687 * 24 23 22 26 26 C 1.38224 * 119.16465 * 359.75270 * 25 24 23 27 27 N 1.31860 * 120.76153 * 359.97438 * 26 25 24 28 28 C 1.31892 * 121.72446 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47546 * 353.62592 * 3 2 1 30 30 H 1.08994 * 109.47282 * 233.62058 * 3 2 1 31 31 H 1.08998 * 109.47359 * 60.00146 * 4 3 2 32 32 H 1.09001 * 109.47224 * 299.99868 * 4 3 2 33 33 H 1.09000 * 109.46975 * 29.99450 * 6 5 4 34 34 H 1.08994 * 109.47272 * 149.99838 * 6 5 4 35 35 H 0.96996 * 120.00421 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.47400 * 59.99300 * 17 15 5 37 37 H 1.08996 * 109.46753 * 299.99651 * 17 15 5 38 38 H 1.09002 * 109.47311 * 172.41626 * 19 18 17 39 39 H 1.09004 * 109.46989 * 292.42089 * 19 18 17 40 40 H 1.09002 * 109.47382 * 185.55407 * 20 19 18 41 41 H 1.09001 * 109.47420 * 305.55880 * 20 19 18 42 42 H 0.96703 * 113.99896 * 180.02562 * 21 20 19 43 43 H 1.09002 * 109.46817 * 41.42815 * 22 18 17 44 44 H 1.09001 * 109.46848 * 281.42951 * 22 18 17 45 45 H 1.07998 * 120.78879 * 359.97438 * 24 23 22 46 46 H 1.08008 * 120.41933 * 179.73003 * 25 24 23 47 47 H 1.07998 * 119.62550 * 180.02562 * 26 25 24 48 48 H 1.07992 * 119.61531 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.5789 -1.3216 5 7 4.5828 0.5790 -1.3220 6 6 5.3153 1.7414 -0.8134 7 6 5.5661 2.7095 -1.9408 8 1 5.2154 2.4816 -2.9365 9 6 6.2434 3.8863 -1.7010 10 7 6.4627 4.7310 -2.6849 11 14 6.8494 4.2810 0.0213 12 1 8.2228 3.7445 0.1978 13 1 6.8643 5.7531 0.2156 14 1 5.9430 3.6590 1.0196 15 6 5.2566 -0.4902 -1.7899 16 8 6.4694 -0.4903 -1.7897 17 6 4.5032 -1.6858 -2.3133 18 7 5.4578 -2.7084 -2.7614 19 6 6.2235 -3.2462 -1.6290 20 6 5.2590 -3.7086 -0.5350 21 8 4.4888 -4.8128 -1.0145 22 6 4.7733 -3.7835 -3.4921 23 6 5.7772 -4.5514 -4.3126 24 6 6.1122 -4.1270 -5.5895 25 6 7.0366 -4.8676 -6.3097 26 6 7.5938 -5.9936 -5.7331 27 7 7.2556 -6.3645 -4.5138 28 6 6.3798 -5.6843 -3.7998 29 1 2.9718 -1.0204 0.1141 30 1 2.9711 0.6103 0.8273 31 1 2.7540 1.6001 -1.4358 32 1 2.7547 -0.0307 -2.1491 33 1 4.7263 2.2313 -0.0381 34 1 6.2678 1.4161 -0.3952 35 1 6.9395 5.5587 -2.5164 36 1 3.8766 -1.3818 -3.1518 37 1 3.8764 -2.0955 -1.5212 38 1 6.8239 -4.0916 -1.9652 39 1 6.8782 -2.4705 -1.2320 40 1 5.8264 -4.0158 0.3436 41 1 4.5919 -2.8889 -0.2684 42 1 3.8542 -5.1583 -0.3717 43 1 4.0194 -3.3522 -4.1508 44 1 4.2931 -4.4568 -2.7820 45 1 5.6602 -3.2431 -6.0146 46 1 7.3178 -4.5688 -7.3088 47 1 8.3151 -6.5758 -6.2873 48 1 6.1274 -6.0192 -2.8046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267898647.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:02 Heat of formation + Delta-G solvation = -21.365831 kcal Electronic energy + Delta-G solvation = -30860.928103 eV Core-core repulsion = 26723.040399 eV Total energy + Delta-G solvation = -4137.887704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37508 -40.77617 -39.00596 -37.93476 -36.74516 -36.37536 -34.78542 -33.66186 -32.58404 -32.27478 -30.76682 -29.77588 -28.27722 -25.80047 -25.19894 -24.51303 -24.09207 -23.16201 -21.48969 -19.75252 -19.13671 -18.50533 -18.43714 -18.01265 -17.82594 -17.52234 -17.16082 -16.99695 -16.37432 -15.93628 -15.84475 -15.72251 -15.43098 -14.99946 -14.65477 -14.55328 -14.53514 -14.32637 -14.03789 -13.93193 -13.84892 -13.72578 -13.53885 -13.37323 -13.24820 -13.01230 -12.70957 -12.63175 -12.58520 -12.43548 -12.36026 -12.10125 -11.92617 -11.78330 -11.65219 -10.78376 -10.75158 -10.66389 -10.45063 -10.30248 -9.87899 -9.40738 -8.97024 -8.25593 -6.29814 0.24145 0.43465 1.39382 1.43876 1.50774 1.71271 1.87050 1.90265 2.25623 2.38108 2.82036 3.09124 3.15417 3.22185 3.47255 3.66456 3.80315 3.94564 4.01080 4.04701 4.10615 4.13224 4.15802 4.22481 4.26603 4.39452 4.46726 4.57815 4.62129 4.64545 4.74987 4.83170 4.91059 4.92382 4.97649 5.04654 5.12430 5.17281 5.25037 5.28723 5.49927 5.56036 5.68005 5.87924 6.06756 6.18748 6.33134 6.63642 6.73901 6.77571 6.96425 7.09847 7.31377 7.55670 8.91485 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.009574 B = 0.003296 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.018313 B = 8493.487563 C =10210.003252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.244 3.756 3 C -0.036 4.036 4 C 0.110 3.890 5 N -0.596 5.596 6 C 0.225 3.775 7 C -0.531 4.531 8 H 0.028 0.972 9 C 0.007 3.993 10 N -0.951 5.951 11 Si 0.944 3.056 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.225 1.225 15 C 0.505 3.495 16 O -0.567 6.567 17 C 0.041 3.959 18 N -0.532 5.532 19 C 0.048 3.952 20 C 0.044 3.956 21 O -0.571 6.571 22 C 0.083 3.917 23 C -0.125 4.125 24 C -0.073 4.073 25 C -0.176 4.176 26 C 0.079 3.921 27 N -0.515 5.515 28 C 0.097 3.903 29 H 0.137 0.863 30 H 0.129 0.871 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.025 0.975 35 H 0.265 0.735 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.392 0.608 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.139 0.861 46 H 0.155 0.845 47 H 0.175 0.825 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.502 -21.429 3.660 22.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.073 4.073 3 C -0.077 4.077 4 C -0.014 4.014 5 N -0.328 5.328 6 C 0.102 3.898 7 C -0.570 4.570 8 H 0.046 0.954 9 C -0.190 4.190 10 N -0.592 5.592 11 Si 0.767 3.233 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.147 1.147 15 C 0.294 3.706 16 O -0.445 6.445 17 C -0.089 4.089 18 N -0.256 5.256 19 C -0.080 4.080 20 C -0.035 4.035 21 O -0.381 6.381 22 C -0.044 4.044 23 C -0.128 4.128 24 C -0.100 4.100 25 C -0.196 4.196 26 C -0.078 4.078 27 N -0.224 5.224 28 C -0.060 4.060 29 H 0.155 0.845 30 H 0.147 0.853 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.243 0.757 43 H 0.103 0.897 44 H 0.125 0.875 45 H 0.157 0.843 46 H 0.173 0.827 47 H 0.192 0.808 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.434 -21.682 3.134 22.833 hybrid contribution 0.026 1.407 0.658 1.553 sum -6.407 -20.276 3.792 21.599 Atomic orbital electron populations 1.81281 1.14584 1.10844 1.10107 1.29177 0.94993 0.91410 0.91726 1.19852 0.79961 1.06769 1.01124 1.21534 0.79012 1.03794 0.97084 1.47847 1.06627 1.16094 1.62196 1.19362 0.93115 0.83438 0.93853 1.21650 1.36097 1.03287 0.95921 0.95386 1.25869 0.95614 0.95963 1.01588 1.70068 1.43121 1.11530 1.34460 0.85777 0.79726 0.77513 0.80290 1.20573 1.21164 1.14706 1.21099 0.87898 0.84497 0.77149 1.90645 1.16209 1.81949 1.55678 1.22168 0.94091 0.90215 1.02471 1.61644 1.26111 1.12491 1.25316 1.22391 0.96317 0.99332 0.89989 1.22871 0.94307 0.89153 0.97135 1.86406 1.56464 1.50310 1.44929 1.21481 0.93209 0.92704 0.96986 1.20930 0.99702 0.96602 0.95535 1.21803 0.95615 0.98450 0.94086 1.22428 0.98079 0.96574 1.02492 1.23158 0.98112 0.95154 0.91339 1.67694 1.14177 1.32509 1.08055 1.22876 0.91922 0.91754 0.99435 0.84541 0.85307 0.89892 0.88056 0.92275 0.95714 0.92642 0.86839 0.88037 0.91205 0.90106 0.92222 0.92053 0.75703 0.89674 0.87493 0.84299 0.82686 0.80840 0.82235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.03 18.54 20.00 0.37 -11.66 16 2 C 0.24 4.33 15.43 89.44 1.38 5.71 16 3 C -0.04 -0.46 6.03 28.79 0.17 -0.29 16 4 C 0.11 2.30 5.17 86.38 0.45 2.74 16 5 N -0.60 -18.72 2.46 -826.15 -2.03 -20.75 16 6 C 0.22 9.23 4.23 85.63 0.36 9.60 16 7 C -0.53 -28.79 9.94 25.60 0.25 -28.53 16 8 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 9 C 0.01 0.39 5.47 84.66 0.46 0.85 16 10 N -0.95 -58.69 13.96 21.45 0.30 -58.39 16 11 Si 0.94 41.64 27.47 68.60 1.88 43.52 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 14 H -0.22 -8.34 6.54 99.48 0.65 -7.69 16 15 C 0.51 16.35 7.44 87.66 0.65 17.00 16 16 O -0.57 -24.53 13.89 -3.04 -0.04 -24.57 16 17 C 0.04 0.87 3.59 85.56 0.31 1.18 16 18 N -0.53 -12.75 4.38 -905.35 -3.96 -16.71 16 19 C 0.05 1.12 5.42 86.30 0.47 1.59 16 20 C 0.04 0.65 6.74 71.98 0.49 1.13 16 21 O -0.57 -6.42 10.36 -148.98 -1.54 -7.96 16 22 C 0.08 1.59 5.02 85.55 0.43 2.02 16 23 C -0.13 -2.78 5.07 -19.78 -0.10 -2.88 16 24 C -0.07 -1.59 9.87 22.47 0.22 -1.37 16 25 C -0.18 -3.43 10.11 22.36 0.23 -3.21 16 26 C 0.08 1.64 11.18 84.69 0.95 2.59 16 27 N -0.52 -12.83 10.36 -195.84 -2.03 -14.86 16 28 C 0.10 2.25 9.45 84.67 0.80 3.05 16 29 H 0.14 0.92 7.22 -2.39 -0.02 0.90 16 30 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 2.01 8.07 -2.39 -0.02 1.99 16 32 H 0.10 1.65 6.44 -2.39 -0.02 1.63 16 33 H 0.06 2.12 7.13 -2.39 -0.02 2.11 16 34 H 0.02 1.11 6.85 -2.39 -0.02 1.09 16 35 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.11 2.16 7.10 -2.39 -0.02 2.14 16 37 H 0.10 1.38 4.77 -2.39 -0.01 1.36 16 38 H 0.07 1.73 5.99 -2.39 -0.01 1.72 16 39 H 0.08 2.46 6.05 -2.38 -0.01 2.44 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.74 5.86 -2.39 -0.01 0.73 16 42 H 0.39 1.10 9.12 -73.96 -0.67 0.43 16 43 H 0.08 1.44 7.73 -2.39 -0.02 1.42 16 44 H 0.11 1.79 4.52 -2.35 -0.01 1.78 16 45 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 46 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 47 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 48 H 0.16 3.35 7.78 -2.91 -0.02 3.33 16 Total: -1.00 -83.37 393.78 0.74 -82.62 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.28 Total: 17.58 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 7.52 Total: 11.18 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -7.35 Total: -122.36 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -1.59 Total: -32.53 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.88 Total: 43.52 kcal Total: -83.37 0.74 -82.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267898647.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.256 kcal (2) G-P(sol) polarization free energy of solvation -83.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds