Wall clock time and date at job start Sat Apr 11 2020 07:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00347 * 2 1 4 4 H 1.48491 * 109.47318 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46690 * 300.00333 * 3 2 1 6 6 H 1.48499 * 109.47201 * 59.99584 * 3 2 1 7 7 C 1.37878 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99538 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00418 * 359.71881 * 7 2 1 10 10 C 1.52997 * 109.47325 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47249 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00004 * 180.02562 * 11 10 9 13 13 O 1.21583 * 120.00328 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00141 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00208 * 180.02562 * 14 12 11 16 16 H 1.08993 * 110.88989 * 34.29183 * 15 14 12 17 17 C 1.55160 * 111.00462 * 158.17666 * 15 14 12 18 18 C 1.54324 * 102.94130 * 153.57371 * 17 15 14 19 19 N 1.47022 * 107.27193 * 337.80140 * 18 17 15 20 20 C 1.34773 * 125.65067 * 178.97210 * 19 18 17 21 21 O 1.21583 * 120.00458 * 179.97438 * 20 19 18 22 22 N 1.34787 * 119.99610 * 359.97438 * 20 19 18 23 23 C 1.39943 * 119.99509 * 175.37293 * 22 20 19 24 24 C 1.38874 * 120.06728 * 214.81137 * 23 22 20 25 25 C 1.38112 * 119.92759 * 179.77155 * 24 23 22 26 26 C 1.38282 * 120.07123 * 0.50347 * 25 24 23 27 27 C 1.38280 * 120.14119 * 359.74944 * 26 25 24 28 28 C 1.38114 * 120.06639 * 359.97438 * 27 26 25 29 29 C 1.47474 * 108.72392 * 358.97959 * 19 18 17 30 30 H 0.96992 * 119.99917 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47283 * 300.00557 * 9 7 2 32 32 H 1.09003 * 109.47165 * 60.00329 * 9 7 2 33 33 H 1.09001 * 109.47441 * 300.00517 * 10 9 7 34 34 H 1.09001 * 109.47189 * 60.00651 * 10 9 7 35 35 H 0.96995 * 120.00288 * 0.02562 * 11 10 9 36 36 H 0.97000 * 119.99644 * 359.97438 * 14 12 11 37 37 H 1.08997 * 110.71678 * 271.93442 * 17 15 14 38 38 H 1.08999 * 110.72051 * 35.02884 * 17 15 14 39 39 H 1.09001 * 109.88335 * 97.22463 * 18 17 15 40 40 H 1.08999 * 109.88097 * 218.23360 * 18 17 15 41 41 H 0.96997 * 120.00173 * 355.37160 * 22 20 19 42 42 H 1.08002 * 120.03011 * 0.02562 * 24 23 22 43 43 H 1.08005 * 119.95985 * 180.25287 * 25 24 23 44 44 H 1.07994 * 119.92813 * 179.72201 * 26 25 24 45 45 H 1.07994 * 119.96729 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.03170 * 179.97438 * 28 27 26 47 47 H 1.08998 * 110.34459 * 265.25058 * 29 19 18 48 48 H 1.08990 * 110.40732 * 142.90941 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 0.0053 10 6 2.2452 -3.6621 0.0027 11 7 1.5127 -4.9308 0.0090 12 6 2.1866 -6.0980 0.0086 13 8 3.4024 -6.0981 0.0035 14 7 1.5127 -7.2652 0.0139 15 6 2.2452 -8.5340 0.0140 16 1 3.1702 -8.4486 0.5840 17 6 1.3608 -9.6867 0.5585 18 6 1.9620 -10.9346 -0.1219 19 7 2.6760 -10.4758 -1.3224 20 6 3.3553 -11.2621 -2.1808 21 8 3.9099 -10.7720 -3.1454 22 7 3.4197 -12.5918 -1.9699 23 6 4.0417 -13.4200 -2.9110 24 6 3.5533 -14.6993 -3.1424 25 6 4.1665 -15.5126 -4.0752 26 6 5.2718 -15.0581 -4.7708 27 6 5.7637 -13.7868 -4.5389 28 6 5.1516 -12.9665 -3.6115 29 6 2.5262 -9.0128 -1.4322 30 1 -0.4849 0.8400 0.0004 31 1 0.6281 -2.5551 0.8980 32 1 0.6206 -2.5587 -0.8820 33 1 2.8678 -3.6060 -0.8902 34 1 2.8759 -3.6029 0.8898 35 1 0.5428 -4.9308 0.0135 36 1 0.5427 -7.2652 0.0183 37 1 1.4467 -9.7595 1.6426 38 1 0.3207 -9.5469 0.2640 39 1 2.6573 -11.4282 0.5571 40 1 1.1656 -11.6239 -0.4022 41 1 3.0351 -12.9745 -1.1659 42 1 2.6925 -15.0562 -2.5965 43 1 3.7846 -16.5061 -4.2586 44 1 5.7522 -15.6977 -5.4964 45 1 6.6274 -13.4348 -5.0834 46 1 5.5365 -11.9738 -3.4305 47 1 1.6878 -8.7656 -2.0834 48 1 3.4453 -8.5639 -1.8086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282891273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:18 Heat of formation + Delta-G solvation = -25.825901 kcal Electronic energy + Delta-G solvation = -28684.707646 eV Core-core repulsion = 24546.626538 eV Total energy + Delta-G solvation = -4138.081108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.14582 -39.95513 -39.08714 -37.74983 -35.11547 -34.93663 -34.18915 -32.83901 -31.28879 -31.17432 -29.78784 -29.58023 -28.18555 -24.91950 -24.16781 -23.11167 -22.50629 -21.71291 -20.93937 -20.65461 -20.24493 -18.86163 -18.22424 -17.62110 -17.01985 -16.57763 -16.32865 -15.75191 -15.48157 -15.33545 -14.95276 -14.69696 -14.50480 -14.36233 -14.02122 -13.92903 -13.69779 -13.53456 -13.44663 -13.28214 -13.09829 -12.82839 -12.32689 -12.22227 -12.03027 -11.82406 -11.58746 -11.25691 -11.18568 -11.04952 -10.73651 -10.61789 -10.34617 -10.32144 -10.00788 -9.57974 -9.27734 -9.24855 -9.22287 -9.03809 -8.51209 -8.41414 -8.29851 -6.09728 -4.12155 0.98754 1.11740 2.02646 2.74435 2.92854 3.28740 3.36489 3.41296 3.42540 3.47255 3.55308 4.03625 4.27188 4.38759 4.46849 4.57822 4.61596 4.65310 4.84239 4.86968 4.92748 5.01697 5.09571 5.19357 5.27735 5.28993 5.32705 5.45523 5.58100 5.72186 5.74588 5.76307 5.99536 6.06126 6.19812 6.26898 6.29022 6.38389 6.46431 6.57611 6.75256 6.76269 6.95077 7.14430 7.43884 7.55452 7.62195 7.89564 8.12205 8.23870 8.37015 8.89447 8.95420 9.52809 11.01989 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.024313 B = 0.001510 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.385860 B =18532.989737 C =19337.990093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.139 3.861 11 N -0.736 5.736 12 C 0.699 3.301 13 O -0.593 6.593 14 N -0.743 5.743 15 C 0.157 3.843 16 H 0.107 0.893 17 C -0.137 4.137 18 C 0.099 3.901 19 N -0.630 5.630 20 C 0.722 3.278 21 O -0.566 6.566 22 N -0.685 5.685 23 C 0.165 3.835 24 C -0.150 4.150 25 C -0.103 4.103 26 C -0.139 4.139 27 C -0.101 4.101 28 C -0.120 4.120 29 C 0.112 3.888 30 H 0.261 0.739 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.394 0.606 36 H 0.397 0.603 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.406 0.594 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.142 0.858 47 H 0.072 0.928 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 -34.132 -1.528 34.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.389 5.389 12 C 0.399 3.601 13 O -0.472 6.472 14 N -0.399 5.399 15 C 0.049 3.951 16 H 0.125 0.875 17 C -0.175 4.175 18 C -0.024 4.024 19 N -0.369 5.369 20 C 0.424 3.576 21 O -0.441 6.441 22 N -0.333 5.333 23 C 0.070 3.930 24 C -0.170 4.170 25 C -0.121 4.121 26 C -0.158 4.158 27 C -0.120 4.120 28 C -0.140 4.140 29 C -0.013 4.013 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.227 0.773 36 H 0.231 0.769 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.241 0.759 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.159 0.841 47 H 0.090 0.910 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.762 -33.557 -2.255 33.746 hybrid contribution -0.926 0.716 0.437 1.249 sum 1.835 -32.841 -1.818 32.943 Atomic orbital electron populations 1.69964 1.06089 1.26745 1.50558 1.24993 0.94891 0.99417 0.94995 0.86456 0.80207 0.83317 0.77590 1.19552 1.20949 1.20959 1.21093 0.93331 0.90335 1.51125 0.92144 1.19334 0.94264 0.91103 0.97825 1.21619 0.95655 0.80292 1.00758 1.45540 1.09907 1.05286 1.78202 1.16075 0.85679 0.80480 0.77914 1.90914 1.11689 1.86511 1.58036 1.44959 1.09307 1.04005 1.81640 1.21755 0.96377 0.82014 0.94968 0.87540 1.22906 1.00080 0.93036 1.01487 1.22029 0.96116 0.97580 0.86696 1.47455 1.54569 1.08365 1.26473 1.15349 0.79423 0.80511 0.82274 1.90966 1.49831 1.73167 1.30171 1.42569 1.61174 1.05489 1.24075 1.17531 0.92659 0.90273 0.92557 1.20860 1.01111 0.94020 1.01051 1.20911 0.95984 0.99429 0.95808 1.21149 0.97533 0.96375 1.00745 1.21110 0.99709 0.93717 0.97453 1.21402 0.93978 1.01264 0.97392 1.22646 1.03396 0.77399 0.97838 0.92930 0.95972 0.95922 0.92659 0.92714 0.77323 0.76863 0.88865 0.89583 0.91064 0.91022 0.75866 0.85885 0.85760 0.86049 0.85701 0.84074 0.91001 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 10 C 0.14 2.95 5.61 -4.04 -0.02 2.93 16 11 N -0.74 -12.45 5.56 -65.23 -0.36 -12.81 16 12 C 0.70 11.50 8.57 -86.92 -0.74 10.76 16 13 O -0.59 -12.31 16.03 5.29 0.08 -12.23 16 14 N -0.74 -8.18 5.22 -56.58 -0.30 -8.47 16 15 C 0.16 1.51 3.37 -65.78 -0.22 1.29 16 16 H 0.11 1.25 7.63 -51.93 -0.40 0.85 16 17 C -0.14 -0.72 6.59 -24.89 -0.16 -0.88 16 18 C 0.10 0.52 6.16 -3.06 -0.02 0.50 16 19 N -0.63 -5.96 3.33 -176.20 -0.59 -6.54 16 20 C 0.72 8.42 8.33 -86.91 -0.72 7.69 16 21 O -0.57 -8.96 14.03 5.29 0.07 -8.88 16 22 N -0.69 -5.83 5.29 -14.22 -0.08 -5.90 16 23 C 0.16 1.57 6.30 -83.69 -0.53 1.04 16 24 C -0.15 -1.11 9.97 -39.39 -0.39 -1.50 16 25 C -0.10 -0.71 10.04 -39.61 -0.40 -1.10 16 26 C -0.14 -1.03 10.04 -39.55 -0.40 -1.43 16 27 C -0.10 -0.90 10.04 -39.61 -0.40 -1.29 16 28 C -0.12 -1.30 8.70 -39.40 -0.34 -1.64 16 29 C 0.11 1.24 6.60 -2.50 -0.02 1.23 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.39 5.61 8.49 -40.82 -0.35 5.26 16 36 H 0.40 3.16 8.55 -40.82 -0.35 2.81 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.36 7.99 -51.93 -0.42 -0.06 16 39 H 0.07 0.27 8.13 -51.93 -0.42 -0.15 16 40 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.41 2.08 7.80 -40.82 -0.32 1.76 16 42 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.12 0.55 8.06 -52.48 -0.42 0.13 16 44 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 46 H 0.14 1.80 6.22 -52.49 -0.33 1.48 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.09 1.28 8.04 -51.93 -0.42 0.86 16 LS Contribution 401.71 15.07 6.05 6.05 Total: -1.00 -36.23 401.71 -11.49 -47.72 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.18 Total: 5.38 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -4.92 Total: 4.58 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.58 Total: -58.98 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.16 Total: -21.11 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.23 -11.49 -47.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282891273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.897 kcal (2) G-P(sol) polarization free energy of solvation -36.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds