Wall clock time and date at job start Sat Apr 11 2020 07:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00347 * 2 1 4 4 H 1.48491 * 109.47318 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46690 * 300.00333 * 3 2 1 6 6 H 1.48499 * 109.47201 * 59.99584 * 3 2 1 7 7 C 1.37878 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99538 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00418 * 359.71881 * 7 2 1 10 10 C 1.52997 * 109.47325 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47249 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00004 * 180.02562 * 11 10 9 13 13 O 1.21583 * 120.00328 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00141 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00208 * 180.02562 * 14 12 11 16 16 H 1.08993 * 110.88989 * 34.29183 * 15 14 12 17 17 C 1.55160 * 111.00462 * 158.17666 * 15 14 12 18 18 C 1.54324 * 102.94130 * 153.57371 * 17 15 14 19 19 N 1.47022 * 107.27193 * 337.80140 * 18 17 15 20 20 C 1.34773 * 125.65067 * 178.97210 * 19 18 17 21 21 O 1.21583 * 120.00458 * 179.97438 * 20 19 18 22 22 N 1.34787 * 119.99610 * 359.97438 * 20 19 18 23 23 C 1.39943 * 119.99509 * 175.37293 * 22 20 19 24 24 C 1.38874 * 120.06728 * 214.81137 * 23 22 20 25 25 C 1.38112 * 119.92759 * 179.77155 * 24 23 22 26 26 C 1.38282 * 120.07123 * 0.50347 * 25 24 23 27 27 C 1.38280 * 120.14119 * 359.74944 * 26 25 24 28 28 C 1.38114 * 120.06639 * 359.97438 * 27 26 25 29 29 C 1.47474 * 108.72392 * 358.97959 * 19 18 17 30 30 H 0.96992 * 119.99917 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47283 * 300.00557 * 9 7 2 32 32 H 1.09003 * 109.47165 * 60.00329 * 9 7 2 33 33 H 1.09001 * 109.47441 * 300.00517 * 10 9 7 34 34 H 1.09001 * 109.47189 * 60.00651 * 10 9 7 35 35 H 0.96995 * 120.00288 * 0.02562 * 11 10 9 36 36 H 0.97000 * 119.99644 * 359.97438 * 14 12 11 37 37 H 1.08997 * 110.71678 * 271.93442 * 17 15 14 38 38 H 1.08999 * 110.72051 * 35.02884 * 17 15 14 39 39 H 1.09001 * 109.88335 * 97.22463 * 18 17 15 40 40 H 1.08999 * 109.88097 * 218.23360 * 18 17 15 41 41 H 0.96997 * 120.00173 * 355.37160 * 22 20 19 42 42 H 1.08002 * 120.03011 * 0.02562 * 24 23 22 43 43 H 1.08005 * 119.95985 * 180.25287 * 25 24 23 44 44 H 1.07994 * 119.92813 * 179.72201 * 26 25 24 45 45 H 1.07994 * 119.96729 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.03170 * 179.97438 * 28 27 26 47 47 H 1.08998 * 110.34459 * 265.25058 * 29 19 18 48 48 H 1.08990 * 110.40732 * 142.90941 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 0.0053 10 6 2.2452 -3.6621 0.0027 11 7 1.5127 -4.9308 0.0090 12 6 2.1866 -6.0980 0.0086 13 8 3.4024 -6.0981 0.0035 14 7 1.5127 -7.2652 0.0139 15 6 2.2452 -8.5340 0.0140 16 1 3.1702 -8.4486 0.5840 17 6 1.3608 -9.6867 0.5585 18 6 1.9620 -10.9346 -0.1219 19 7 2.6760 -10.4758 -1.3224 20 6 3.3553 -11.2621 -2.1808 21 8 3.9099 -10.7720 -3.1454 22 7 3.4197 -12.5918 -1.9699 23 6 4.0417 -13.4200 -2.9110 24 6 3.5533 -14.6993 -3.1424 25 6 4.1665 -15.5126 -4.0752 26 6 5.2718 -15.0581 -4.7708 27 6 5.7637 -13.7868 -4.5389 28 6 5.1516 -12.9665 -3.6115 29 6 2.5262 -9.0128 -1.4322 30 1 -0.4849 0.8400 0.0004 31 1 0.6281 -2.5551 0.8980 32 1 0.6206 -2.5587 -0.8820 33 1 2.8678 -3.6060 -0.8902 34 1 2.8759 -3.6029 0.8898 35 1 0.5428 -4.9308 0.0135 36 1 0.5427 -7.2652 0.0183 37 1 1.4467 -9.7595 1.6426 38 1 0.3207 -9.5469 0.2640 39 1 2.6573 -11.4282 0.5571 40 1 1.1656 -11.6239 -0.4022 41 1 3.0351 -12.9745 -1.1659 42 1 2.6925 -15.0562 -2.5965 43 1 3.7846 -16.5061 -4.2586 44 1 5.7522 -15.6977 -5.4964 45 1 6.6274 -13.4348 -5.0834 46 1 5.5365 -11.9738 -3.4305 47 1 1.6878 -8.7656 -2.0834 48 1 3.4453 -8.5639 -1.8086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282891273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:17 Heat of formation + Delta-G solvation = -52.100095 kcal Electronic energy + Delta-G solvation = -28685.846980 eV Core-core repulsion = 24546.626538 eV Total energy + Delta-G solvation = -4139.220442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.94594 -41.10277 -39.90473 -38.62033 -36.61084 -35.90926 -35.30673 -34.77415 -32.25341 -31.81068 -31.15234 -30.41675 -29.12538 -26.69241 -25.09234 -23.75611 -23.13233 -23.09528 -22.29115 -21.86156 -21.02820 -19.70973 -19.37131 -18.46855 -18.37269 -17.81288 -17.25229 -16.74775 -16.66450 -16.48922 -16.34994 -15.91713 -15.54287 -15.24272 -15.12411 -14.94659 -14.73984 -14.51547 -14.32867 -14.25087 -14.07453 -13.95846 -13.65060 -13.20013 -12.96740 -12.85860 -12.67689 -12.54700 -12.51497 -12.23549 -12.19078 -11.88427 -11.67150 -11.53889 -11.49622 -11.21892 -11.16467 -10.60565 -10.42228 -9.92152 -9.85070 -9.74019 -9.06830 -8.23930 -6.33613 0.34760 0.48475 1.22319 1.40965 1.42359 1.55203 1.77778 1.92672 2.12945 2.41568 2.79930 2.91369 3.11168 3.31276 3.50068 3.55557 3.99505 4.01631 4.09783 4.15122 4.24570 4.32770 4.47828 4.51233 4.52933 4.55637 4.58726 4.66534 4.70296 4.76061 4.87746 4.90496 5.05328 5.10250 5.12617 5.31717 5.36827 5.40639 5.50140 5.52493 5.57919 5.60790 5.65530 5.79680 5.88085 6.04159 6.11975 6.18137 6.74516 6.79646 7.12770 7.31220 7.35732 7.58748 8.88090 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.024313 B = 0.001510 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.385860 B =18532.989737 C =19337.990093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.160 3.840 11 N -0.730 5.730 12 C 0.698 3.302 13 O -0.639 6.639 14 N -0.718 5.718 15 C 0.155 3.845 16 H 0.084 0.916 17 C -0.119 4.119 18 C 0.094 3.906 19 N -0.628 5.628 20 C 0.713 3.287 21 O -0.619 6.619 22 N -0.667 5.667 23 C 0.144 3.856 24 C -0.144 4.144 25 C -0.101 4.101 26 C -0.140 4.140 27 C -0.115 4.115 28 C -0.151 4.151 29 C 0.114 3.886 30 H 0.266 0.734 31 H 0.012 0.988 32 H 0.009 0.991 33 H 0.040 0.960 34 H 0.044 0.956 35 H 0.409 0.591 36 H 0.417 0.583 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.424 0.576 42 H 0.153 0.847 43 H 0.157 0.843 44 H 0.146 0.854 45 H 0.130 0.870 46 H 0.108 0.892 47 H 0.073 0.927 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.382 -36.900 -0.550 36.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.036 3.964 11 N -0.385 5.385 12 C 0.398 3.602 13 O -0.521 6.521 14 N -0.374 5.374 15 C 0.047 3.953 16 H 0.102 0.898 17 C -0.157 4.157 18 C -0.028 4.028 19 N -0.365 5.365 20 C 0.416 3.584 21 O -0.499 6.499 22 N -0.316 5.316 23 C 0.050 3.950 24 C -0.164 4.164 25 C -0.119 4.119 26 C -0.159 4.159 27 C -0.134 4.134 28 C -0.171 4.171 29 C -0.011 4.011 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.028 0.972 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.245 0.755 36 H 0.255 0.745 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.263 0.737 42 H 0.171 0.829 43 H 0.175 0.825 44 H 0.164 0.836 45 H 0.148 0.852 46 H 0.126 0.874 47 H 0.091 0.909 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.943 -36.408 -1.225 36.441 hybrid contribution -0.382 1.477 0.096 1.529 sum 0.561 -34.931 -1.130 34.954 Atomic orbital electron populations 1.70055 1.07435 1.27887 1.51108 1.25830 0.95788 1.02948 0.94438 0.85419 0.78946 0.78914 0.77901 1.19139 1.20311 1.20099 1.21499 0.93573 0.92007 1.51397 0.92467 1.19134 0.94228 0.91538 0.96505 1.21066 0.94643 0.81222 0.99519 1.45183 1.10478 1.04314 1.78537 1.16209 0.85131 0.81415 0.77485 1.90890 1.13967 1.87268 1.59965 1.44709 1.10237 1.02757 1.79740 1.21808 0.96908 0.82584 0.93969 0.89757 1.22932 1.00050 0.90052 1.02641 1.22402 0.97110 0.98137 0.85140 1.47421 1.54378 1.07363 1.27379 1.15617 0.79316 0.81503 0.82013 1.90933 1.51992 1.74350 1.32647 1.42316 1.60578 1.04164 1.24591 1.17756 0.92735 0.91383 0.93152 1.21191 1.01590 0.92695 1.00925 1.21365 0.95229 1.00601 0.94734 1.21481 0.97707 0.95706 1.00956 1.21277 1.00175 0.94562 0.97360 1.21321 0.95776 1.00497 0.99534 1.22448 1.01148 0.78768 0.98753 0.92561 0.96975 0.97247 0.94174 0.93753 0.75543 0.74499 0.86610 0.87325 0.89068 0.87943 0.73723 0.82891 0.82541 0.83638 0.85167 0.87417 0.90866 0.93882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.97 13.29 21.45 0.28 -53.69 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.55 -30.68 9.11 25.60 0.23 -30.44 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.18 5.09 29.85 0.15 1.33 16 10 C 0.16 6.96 5.61 86.38 0.48 7.44 16 11 N -0.73 -24.84 5.56 -478.54 -2.66 -27.50 16 12 C 0.70 23.19 8.57 179.05 1.53 24.72 16 13 O -0.64 -27.58 16.03 -3.98 -0.06 -27.64 16 14 N -0.72 -15.07 5.22 -451.17 -2.35 -17.43 16 15 C 0.15 2.87 3.37 46.39 0.16 3.03 16 16 H 0.08 2.01 7.63 -2.39 -0.02 1.99 16 17 C -0.12 -0.82 6.59 31.78 0.21 -0.62 16 18 C 0.09 0.67 6.16 86.73 0.53 1.21 16 19 N -0.63 -11.66 3.33 -829.63 -2.76 -14.42 16 20 C 0.71 17.24 8.33 179.05 1.49 18.73 16 21 O -0.62 -21.51 14.03 -3.98 -0.06 -21.56 16 22 N -0.67 -10.93 5.29 -317.17 -1.68 -12.61 16 23 C 0.14 2.72 6.30 38.15 0.24 2.96 16 24 C -0.14 -1.78 9.97 22.39 0.22 -1.55 16 25 C -0.10 -1.10 10.04 22.25 0.22 -0.87 16 26 C -0.14 -1.85 10.04 22.29 0.22 -1.62 16 27 C -0.12 -2.12 10.04 22.25 0.22 -1.90 16 28 C -0.15 -3.54 8.70 22.39 0.19 -3.34 16 29 C 0.11 2.65 6.60 86.85 0.57 3.22 16 30 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.41 11.38 8.49 -92.71 -0.79 10.59 16 36 H 0.42 5.61 8.55 -92.71 -0.79 4.82 16 37 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.11 0.36 7.99 -2.39 -0.02 0.34 16 39 H 0.09 0.35 8.13 -2.39 -0.02 0.33 16 40 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.42 3.36 7.80 -92.71 -0.72 2.64 16 42 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 43 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 44 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 46 H 0.11 3.20 6.22 -2.91 -0.02 3.18 16 47 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.04 1.38 8.04 -2.39 -0.02 1.36 16 Total: -1.00 -84.52 401.71 -1.40 -85.93 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -1.30 Total: 19.78 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 7.16 Total: 23.25 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -9.17 Total: -125.65 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -0.12 Total: -49.21 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -84.52 -1.40 -85.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282891273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.826 kcal (2) G-P(sol) polarization free energy of solvation -84.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds