Wall clock time and date at job start Sat Apr 11 2020 07:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00226 * 2 1 4 4 H 1.48501 * 109.46520 * 269.99753 * 3 2 1 5 5 H 1.48498 * 109.47179 * 29.99538 * 3 2 1 6 6 H 1.48498 * 109.47284 * 150.00003 * 3 2 1 7 7 C 1.37877 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00217 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00194 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47485 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47162 * 179.97438 * 10 9 7 12 12 N 1.46508 * 109.47073 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00149 * 180.02562 * 12 11 10 14 14 O 1.21355 * 119.99673 * 0.02562 * 13 12 11 15 15 C 1.49446 * 120.00249 * 180.02562 * 13 12 11 16 16 O 1.21357 * 119.99610 * 0.02562 * 15 13 12 17 17 N 1.34776 * 120.00249 * 180.02562 * 15 13 12 18 18 C 1.46500 * 119.99912 * 179.97438 * 17 15 13 19 19 H 1.08998 * 110.90371 * 31.14058 * 18 17 15 20 20 C 1.55422 * 111.10625 * 267.17442 * 18 17 15 21 21 C 1.54321 * 103.04810 * 206.29847 * 20 18 17 22 22 N 1.47448 * 107.23159 * 22.28093 * 21 20 18 23 23 C 1.39000 * 110.99821 * 123.26142 * 22 21 20 24 24 C 1.39139 * 119.70896 * 59.15736 * 23 22 21 25 25 C 1.38289 * 119.09549 * 179.97438 * 24 23 22 26 26 C 1.38883 * 118.51049 * 0.02562 * 25 24 23 27 27 C 1.38021 * 119.32961 * 359.97438 * 26 25 24 28 28 N 1.31982 * 120.85525 * 359.72413 * 27 26 25 29 29 C 1.47846 * 108.56553 * 0.99350 * 22 21 20 30 30 H 0.97001 * 119.99814 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46755 * 60.00444 * 9 7 2 32 32 H 1.08999 * 109.47340 * 300.00844 * 9 7 2 33 33 H 1.09004 * 109.46364 * 60.00125 * 10 9 7 34 34 H 1.08999 * 109.47024 * 300.00995 * 10 9 7 35 35 H 1.09004 * 109.47212 * 60.00849 * 11 10 9 36 36 H 1.08999 * 109.47669 * 300.00788 * 11 10 9 37 37 H 0.96995 * 119.99391 * 0.02562 * 12 11 10 38 38 H 0.96994 * 119.99874 * 359.97438 * 17 15 13 39 39 H 1.09004 * 110.69757 * 87.90721 * 20 18 17 40 40 H 1.09004 * 110.69257 * 324.68764 * 20 18 17 41 41 H 1.08999 * 109.88748 * 262.87827 * 21 20 18 42 42 H 1.08997 * 110.02694 * 141.76299 * 21 20 18 43 43 H 1.07998 * 120.44693 * 0.02562 * 24 23 22 44 44 H 1.08007 * 120.74613 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.33695 * 180.02562 * 26 25 24 46 46 H 1.07995 * 119.57408 * 180.02562 * 27 26 25 47 47 H 1.09002 * 110.37464 * 94.73346 * 29 22 21 48 48 H 1.08999 * 110.37318 * 216.96123 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5514 -2.6367 -0.0012 12 7 6.0397 -4.0180 -0.0017 13 6 7.3648 -4.2643 -0.0022 14 8 8.1534 -3.3419 -0.0019 15 6 7.8630 -5.6733 -0.0033 16 8 7.0743 -6.5956 -0.0042 17 7 9.1880 -5.9196 -0.0034 18 6 9.6763 -7.3008 -0.0039 19 1 8.9842 -7.9578 -0.5307 20 6 9.9302 -7.8052 1.4441 21 6 11.0108 -8.8898 1.2508 22 7 11.6908 -8.6061 -0.0263 23 6 13.0596 -8.4530 0.1614 24 6 13.8016 -9.4957 0.7074 25 6 15.1626 -9.3299 0.8881 26 6 15.7384 -8.1221 0.5160 27 6 14.9422 -7.1302 -0.0198 28 7 13.6465 -7.3183 -0.1864 29 6 11.0971 -7.3869 -0.6151 30 1 -0.4850 0.8401 -0.0004 31 1 3.8751 -0.6798 0.8895 32 1 3.8745 -0.6808 -0.8904 33 1 3.6577 -3.1506 -0.8897 34 1 3.6583 -3.1503 0.8902 35 1 5.9155 -2.1226 0.8884 36 1 5.9141 -2.1231 -0.8915 37 1 5.4094 -4.7551 -0.0016 38 1 9.8183 -5.1824 -0.0031 39 1 9.0226 -8.2365 1.8666 40 1 10.3033 -6.9973 2.0736 41 1 10.5451 -9.8745 1.2122 42 1 11.7290 -8.8513 2.0699 43 1 13.3213 -10.4222 0.9855 44 1 15.7642 -10.1219 1.3093 45 1 16.7987 -7.9610 0.6437 46 1 15.3859 -6.1896 -0.3110 47 1 11.6822 -6.5091 -0.3404 48 1 11.0387 -7.4788 -1.6996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286836046.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:23 Heat of formation + Delta-G solvation = -21.679497 kcal Electronic energy + Delta-G solvation = -28554.272837 eV Core-core repulsion = 24416.371531 eV Total energy + Delta-G solvation = -4137.901306 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.40276 -40.65495 -39.14450 -38.23103 -35.91358 -34.97642 -33.34608 -33.06096 -32.13581 -31.49282 -29.63631 -29.00001 -27.61374 -25.03756 -24.01328 -23.72074 -22.52328 -21.59394 -21.25521 -20.78354 -20.16492 -18.54503 -18.19682 -17.10703 -16.85081 -16.78205 -16.36966 -16.31113 -16.02929 -15.57422 -15.25462 -14.89693 -14.58934 -14.33244 -14.18076 -14.09330 -13.89514 -13.74443 -13.66804 -13.40969 -12.73384 -12.63821 -12.41178 -12.37633 -12.10645 -12.04249 -11.97628 -11.78936 -11.33417 -11.12430 -10.92765 -10.52758 -10.23576 -10.19333 -9.99979 -9.93118 -9.79655 -9.59757 -9.54470 -9.24708 -9.09245 -8.67138 -8.56790 -6.07167 -4.06203 0.62053 0.78081 1.31568 2.15462 2.95908 3.11713 3.30087 3.33813 3.37823 3.41192 3.56584 3.90057 3.95326 4.18895 4.38057 4.40258 4.43089 4.50470 4.58868 4.63291 4.69169 4.77305 4.79651 5.12664 5.21297 5.26622 5.31170 5.36254 5.37338 5.42402 5.53493 5.55495 5.55715 5.69998 5.87844 5.91845 5.98416 6.06347 6.13744 6.37738 6.52032 6.60128 6.72904 6.81232 7.19220 7.30105 7.32611 7.48063 7.62249 7.74110 7.95166 8.49191 8.96929 9.54695 11.06058 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.030286 B = 0.001475 C = 0.001424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.290623 B =18981.201249 C =19664.243207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.115 4.115 11 C 0.111 3.889 12 N -0.691 5.691 13 C 0.501 3.499 14 O -0.526 6.526 15 C 0.512 3.488 16 O -0.516 6.516 17 N -0.695 5.695 18 C 0.133 3.867 19 H 0.113 0.887 20 C -0.154 4.154 21 C 0.050 3.950 22 N -0.467 5.467 23 C 0.306 3.694 24 C -0.183 4.183 25 C -0.055 4.055 26 C -0.201 4.201 27 C 0.126 3.874 28 N -0.520 5.520 29 C 0.038 3.962 30 H 0.263 0.737 31 H 0.019 0.981 32 H 0.015 0.985 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.413 0.587 38 H 0.415 0.585 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.157 0.843 47 H 0.091 0.909 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.123 -21.228 2.606 39.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.153 4.153 11 C -0.011 4.011 12 N -0.342 5.342 13 C 0.281 3.719 14 O -0.403 6.403 15 C 0.293 3.707 16 O -0.390 6.390 17 N -0.348 5.348 18 C 0.027 3.973 19 H 0.131 0.869 20 C -0.194 4.194 21 C -0.076 4.076 22 N -0.184 5.184 23 C 0.074 3.926 24 C -0.205 4.205 25 C -0.081 4.081 26 C -0.222 4.222 27 C -0.031 4.031 28 N -0.234 5.234 29 C -0.089 4.089 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.249 0.751 38 H 0.251 0.749 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.152 0.848 46 H 0.174 0.826 47 H 0.109 0.891 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 32.287 -20.864 1.905 38.489 hybrid contribution 1.035 0.762 0.728 1.477 sum 33.322 -20.102 2.633 39.005 Atomic orbital electron populations 1.69910 1.06323 1.26964 1.50886 1.25022 0.94738 0.99205 0.94444 0.86779 0.80384 0.83563 0.78579 1.20242 1.21353 1.18922 1.21091 0.89253 0.94585 1.51207 0.90928 1.19504 0.97376 0.91241 0.96713 1.21744 0.90101 1.01290 1.02201 1.21858 0.96687 0.80036 1.02507 1.46019 1.06039 1.11147 1.71039 1.19969 0.84004 0.88903 0.79031 1.90767 1.55255 1.45428 1.48816 1.20336 0.83136 0.89984 0.77216 1.90774 1.55124 1.45718 1.47431 1.45583 1.06888 1.08836 1.73513 1.22220 0.95820 0.83090 0.96143 0.86891 1.23273 0.99794 0.98821 0.97472 1.22951 0.95878 1.00413 0.88329 1.60746 0.99848 1.34563 1.23250 1.19973 0.90927 0.89301 0.92370 1.21558 0.94641 0.99897 1.04429 1.21485 0.94291 0.97174 0.95128 1.22042 1.01643 0.95127 1.03416 1.22578 0.88281 0.98855 0.93390 1.67521 1.13057 1.21930 1.20865 1.23250 0.92608 0.92421 1.00622 0.92676 0.96242 0.96669 0.91789 0.91778 0.91086 0.91065 0.75115 0.74858 0.89087 0.90417 0.88769 0.91270 0.84535 0.84621 0.84767 0.82566 0.89067 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -14.66 9.66 -34.44 -0.33 -15.00 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.12 -2.12 5.27 -26.73 -0.14 -2.26 16 11 C 0.11 1.77 5.67 -4.04 -0.02 1.75 16 12 N -0.69 -9.73 5.55 -60.73 -0.34 -10.07 16 13 C 0.50 7.04 7.89 -11.59 -0.09 6.95 16 14 O -0.53 -8.42 16.48 5.49 0.09 -8.33 16 15 C 0.51 6.29 7.89 -11.59 -0.09 6.20 16 16 O -0.52 -7.22 16.12 5.49 0.09 -7.14 16 17 N -0.69 -6.62 5.20 -52.02 -0.27 -6.89 16 18 C 0.13 1.08 3.43 -65.64 -0.23 0.86 16 19 H 0.11 1.03 7.54 -51.93 -0.39 0.64 16 20 C -0.15 -1.07 6.65 -24.75 -0.16 -1.23 16 21 C 0.05 0.30 6.43 -2.83 -0.02 0.28 16 22 N -0.47 -3.57 5.20 -169.99 -0.88 -4.45 16 23 C 0.31 2.48 6.17 -155.02 -0.96 1.52 16 24 C -0.18 -1.14 9.01 -39.23 -0.35 -1.50 16 25 C -0.05 -0.27 10.16 -39.32 -0.40 -0.67 16 26 C -0.20 -1.01 10.10 -39.42 -0.40 -1.41 16 27 C 0.13 0.82 11.17 -17.57 -0.20 0.62 16 28 N -0.52 -4.49 8.18 -12.44 -0.10 -4.59 16 29 C 0.04 0.30 6.00 -2.30 -0.01 0.29 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 32 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.41 5.33 7.94 -40.82 -0.32 5.00 16 38 H 0.41 3.64 8.04 -40.82 -0.33 3.32 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.38 7.13 -51.93 -0.37 0.01 16 43 H 0.14 0.64 7.97 -52.49 -0.42 0.22 16 44 H 0.14 0.33 8.06 -52.48 -0.42 -0.09 16 45 H 0.13 0.35 8.06 -52.48 -0.42 -0.07 16 46 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 47 H 0.09 0.77 6.44 -51.93 -0.33 0.44 16 48 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 399.37 15.07 6.02 6.02 Total: -1.00 -33.83 399.37 -10.08 -43.91 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.17 Total: 3.65 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -3.62 Total: -2.11 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.82 Total: -52.86 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.18 Total: -15.47 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.83 -10.08 -43.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286836046.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.226 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds