Wall clock time and date at job start Sat Apr 11 2020 07:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00226 * 2 1 4 4 H 1.48501 * 109.46520 * 269.99753 * 3 2 1 5 5 H 1.48498 * 109.47179 * 29.99538 * 3 2 1 6 6 H 1.48498 * 109.47284 * 150.00003 * 3 2 1 7 7 C 1.37877 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00217 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00194 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47485 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47162 * 179.97438 * 10 9 7 12 12 N 1.46508 * 109.47073 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00149 * 180.02562 * 12 11 10 14 14 O 1.21355 * 119.99673 * 0.02562 * 13 12 11 15 15 C 1.49446 * 120.00249 * 180.02562 * 13 12 11 16 16 O 1.21357 * 119.99610 * 0.02562 * 15 13 12 17 17 N 1.34776 * 120.00249 * 180.02562 * 15 13 12 18 18 C 1.46500 * 119.99912 * 179.97438 * 17 15 13 19 19 H 1.08998 * 110.90371 * 31.14058 * 18 17 15 20 20 C 1.55422 * 111.10625 * 267.17442 * 18 17 15 21 21 C 1.54321 * 103.04810 * 206.29847 * 20 18 17 22 22 N 1.47448 * 107.23159 * 22.28093 * 21 20 18 23 23 C 1.39000 * 110.99821 * 123.26142 * 22 21 20 24 24 C 1.39139 * 119.70896 * 59.15736 * 23 22 21 25 25 C 1.38289 * 119.09549 * 179.97438 * 24 23 22 26 26 C 1.38883 * 118.51049 * 0.02562 * 25 24 23 27 27 C 1.38021 * 119.32961 * 359.97438 * 26 25 24 28 28 N 1.31982 * 120.85525 * 359.72413 * 27 26 25 29 29 C 1.47846 * 108.56553 * 0.99350 * 22 21 20 30 30 H 0.97001 * 119.99814 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46755 * 60.00444 * 9 7 2 32 32 H 1.08999 * 109.47340 * 300.00844 * 9 7 2 33 33 H 1.09004 * 109.46364 * 60.00125 * 10 9 7 34 34 H 1.08999 * 109.47024 * 300.00995 * 10 9 7 35 35 H 1.09004 * 109.47212 * 60.00849 * 11 10 9 36 36 H 1.08999 * 109.47669 * 300.00788 * 11 10 9 37 37 H 0.96995 * 119.99391 * 0.02562 * 12 11 10 38 38 H 0.96994 * 119.99874 * 359.97438 * 17 15 13 39 39 H 1.09004 * 110.69757 * 87.90721 * 20 18 17 40 40 H 1.09004 * 110.69257 * 324.68764 * 20 18 17 41 41 H 1.08999 * 109.88748 * 262.87827 * 21 20 18 42 42 H 1.08997 * 110.02694 * 141.76299 * 21 20 18 43 43 H 1.07998 * 120.44693 * 0.02562 * 24 23 22 44 44 H 1.08007 * 120.74613 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.33695 * 180.02562 * 26 25 24 46 46 H 1.07995 * 119.57408 * 180.02562 * 27 26 25 47 47 H 1.09002 * 110.37464 * 94.73346 * 29 22 21 48 48 H 1.08999 * 110.37318 * 216.96123 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5514 -2.6367 -0.0012 12 7 6.0397 -4.0180 -0.0017 13 6 7.3648 -4.2643 -0.0022 14 8 8.1534 -3.3419 -0.0019 15 6 7.8630 -5.6733 -0.0033 16 8 7.0743 -6.5956 -0.0042 17 7 9.1880 -5.9196 -0.0034 18 6 9.6763 -7.3008 -0.0039 19 1 8.9842 -7.9578 -0.5307 20 6 9.9302 -7.8052 1.4441 21 6 11.0108 -8.8898 1.2508 22 7 11.6908 -8.6061 -0.0263 23 6 13.0596 -8.4530 0.1614 24 6 13.8016 -9.4957 0.7074 25 6 15.1626 -9.3299 0.8881 26 6 15.7384 -8.1221 0.5160 27 6 14.9422 -7.1302 -0.0198 28 7 13.6465 -7.3183 -0.1864 29 6 11.0971 -7.3869 -0.6151 30 1 -0.4850 0.8401 -0.0004 31 1 3.8751 -0.6798 0.8895 32 1 3.8745 -0.6808 -0.8904 33 1 3.6577 -3.1506 -0.8897 34 1 3.6583 -3.1503 0.8902 35 1 5.9155 -2.1226 0.8884 36 1 5.9141 -2.1231 -0.8915 37 1 5.4094 -4.7551 -0.0016 38 1 9.8183 -5.1824 -0.0031 39 1 9.0226 -8.2365 1.8666 40 1 10.3033 -6.9973 2.0736 41 1 10.5451 -9.8745 1.2122 42 1 11.7290 -8.8513 2.0699 43 1 13.3213 -10.4222 0.9855 44 1 15.7642 -10.1219 1.3093 45 1 16.7987 -7.9610 0.6437 46 1 15.3859 -6.1896 -0.3110 47 1 11.6822 -6.5091 -0.3404 48 1 11.0387 -7.4788 -1.6996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286836046.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:23 Heat of formation + Delta-G solvation = -46.231770 kcal Electronic energy + Delta-G solvation = -28555.337504 eV Core-core repulsion = 24416.371531 eV Total energy + Delta-G solvation = -4138.965972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.04554 -41.53631 -39.97965 -39.05020 -37.23059 -35.90293 -35.10646 -33.50503 -33.30628 -32.72051 -30.16722 -29.73504 -29.14556 -26.24254 -24.59933 -24.39815 -23.78353 -22.30212 -22.14817 -21.91088 -21.33715 -19.64077 -18.89460 -18.73011 -17.99031 -17.33111 -17.24999 -17.09177 -16.77628 -16.52078 -16.26131 -16.10305 -15.99337 -15.23342 -15.03289 -14.89751 -14.77905 -14.70884 -14.54776 -14.36619 -13.91734 -13.81986 -13.64554 -13.22675 -12.99616 -12.92036 -12.75304 -12.74819 -12.70236 -12.62818 -11.96044 -11.89984 -11.78217 -11.60623 -11.33425 -10.97226 -10.78900 -10.75240 -10.69445 -10.43802 -10.37433 -10.28883 -9.15703 -8.28233 -6.32687 0.18428 0.26011 0.37188 1.18406 1.38597 1.40134 1.51851 2.05719 2.34980 2.37629 2.66480 2.92743 3.07698 3.28478 3.35604 3.43152 3.68061 3.94007 4.01630 4.06759 4.08916 4.16743 4.17258 4.23096 4.28352 4.38028 4.47699 4.65380 4.70340 4.76304 4.80823 4.84194 4.86010 4.86277 4.93621 5.01872 5.06307 5.15701 5.18823 5.31882 5.46406 5.53214 5.55490 5.57509 5.65169 5.84551 6.11382 6.27291 6.28347 6.64143 6.75739 6.86429 7.02261 7.32186 8.88351 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.030286 B = 0.001475 C = 0.001424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.290623 B =18981.201249 C =19664.243207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.534 4.534 8 H 0.035 0.965 9 C -0.011 4.011 10 C -0.105 4.105 11 C 0.124 3.876 12 N -0.687 5.687 13 C 0.504 3.496 14 O -0.545 6.545 15 C 0.519 3.481 16 O -0.535 6.535 17 N -0.680 5.680 18 C 0.134 3.866 19 H 0.106 0.894 20 C -0.148 4.148 21 C 0.054 3.946 22 N -0.472 5.472 23 C 0.282 3.718 24 C -0.189 4.189 25 C -0.056 4.056 26 C -0.197 4.197 27 C 0.107 3.893 28 N -0.547 5.547 29 C 0.047 3.953 30 H 0.266 0.734 31 H 0.025 0.975 32 H 0.024 0.976 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.419 0.581 38 H 0.419 0.581 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.150 0.850 44 H 0.164 0.836 45 H 0.160 0.840 46 H 0.172 0.828 47 H 0.084 0.916 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.259 -21.612 3.134 42.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.572 4.572 8 H 0.053 0.947 9 C -0.049 4.049 10 C -0.143 4.143 11 C 0.001 3.999 12 N -0.340 5.340 13 C 0.284 3.716 14 O -0.423 6.423 15 C 0.299 3.701 16 O -0.411 6.411 17 N -0.333 5.333 18 C 0.028 3.972 19 H 0.124 0.876 20 C -0.188 4.188 21 C -0.071 4.071 22 N -0.190 5.190 23 C 0.050 3.950 24 C -0.211 4.211 25 C -0.082 4.082 26 C -0.218 4.218 27 C -0.050 4.050 28 N -0.262 5.262 29 C -0.081 4.081 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.256 0.744 38 H 0.257 0.743 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.094 0.906 43 H 0.167 0.833 44 H 0.181 0.819 45 H 0.178 0.822 46 H 0.189 0.811 47 H 0.103 0.897 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 35.468 -21.279 2.435 41.433 hybrid contribution 0.104 0.784 0.564 0.971 sum 35.571 -20.495 2.998 41.162 Atomic orbital electron populations 1.70068 1.08351 1.28141 1.52673 1.26010 0.95584 1.03543 0.94128 0.85668 0.79603 0.78249 0.79200 1.19238 1.21181 1.16722 1.21484 0.92066 0.93221 1.50395 0.94700 1.19461 0.93942 0.94319 0.97162 1.21524 0.91972 0.98476 1.02299 1.21560 0.94572 0.81041 1.02734 1.45890 1.06421 1.10664 1.70990 1.20208 0.83613 0.89501 0.78253 1.90758 1.55660 1.46199 1.49707 1.19972 0.83787 0.88841 0.77494 1.90774 1.55712 1.45794 1.48868 1.45555 1.06007 1.09787 1.71939 1.22277 0.95748 0.81947 0.97191 0.87625 1.23220 1.00203 0.99060 0.96287 1.22988 0.95564 1.00545 0.88040 1.60825 1.00106 1.34117 1.23970 1.20205 0.91108 0.89987 0.93653 1.21785 0.95319 0.99893 1.04111 1.21880 0.94054 0.97879 0.94395 1.22368 1.02783 0.94629 1.02020 1.22972 0.87990 1.00127 0.93877 1.67476 1.14258 1.22661 1.21795 1.23096 0.92072 0.92641 1.00269 0.92540 0.95652 0.95801 0.91797 0.91769 0.90894 0.90865 0.74390 0.74292 0.89017 0.90646 0.87453 0.90630 0.83260 0.81857 0.82241 0.81118 0.89740 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 2 C 0.00 0.24 5.47 84.66 0.46 0.70 16 3 Si 0.95 43.86 27.47 68.60 1.88 45.75 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 7 C -0.53 -30.28 9.66 25.60 0.25 -30.03 16 8 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.10 -3.75 5.27 30.59 0.16 -3.59 16 11 C 0.12 3.73 5.67 86.38 0.49 4.22 16 12 N -0.69 -18.52 5.55 -464.40 -2.58 -21.10 16 13 C 0.50 13.59 7.89 87.27 0.69 14.28 16 14 O -0.55 -16.79 16.48 -3.26 -0.05 -16.85 16 15 C 0.52 12.31 7.89 87.27 0.69 13.00 16 16 O -0.53 -14.60 16.12 -3.27 -0.05 -14.65 16 17 N -0.68 -12.50 5.20 -436.85 -2.27 -14.77 16 18 C 0.13 2.10 3.43 46.48 0.16 2.26 16 19 H 0.11 1.88 7.54 -2.39 -0.02 1.86 16 20 C -0.15 -1.92 6.65 31.88 0.21 -1.71 16 21 C 0.05 0.58 6.43 86.65 0.56 1.14 16 22 N -0.47 -6.91 5.20 -691.71 -3.60 -10.50 16 23 C 0.28 4.35 6.17 133.06 0.82 5.17 16 24 C -0.19 -2.06 9.01 22.50 0.20 -1.86 16 25 C -0.06 -0.43 10.16 22.44 0.23 -0.20 16 26 C -0.20 -1.56 10.10 22.37 0.23 -1.34 16 27 C 0.11 1.28 11.17 84.62 0.95 2.22 16 28 N -0.55 -9.21 8.18 -193.26 -1.58 -10.79 16 29 C 0.05 0.72 6.00 86.77 0.52 1.24 16 30 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 31 H 0.03 1.11 7.20 -2.39 -0.02 1.09 16 32 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.42 10.39 7.94 -92.71 -0.74 9.65 16 38 H 0.42 7.09 8.04 -92.71 -0.75 6.34 16 39 H 0.09 1.19 8.14 -2.38 -0.02 1.18 16 40 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 0.73 7.13 -2.39 -0.02 0.71 16 43 H 0.15 1.12 7.97 -2.91 -0.02 1.10 16 44 H 0.16 0.25 8.06 -2.91 -0.02 0.23 16 45 H 0.16 0.37 8.06 -2.91 -0.02 0.34 16 46 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 47 H 0.08 1.43 6.44 -2.39 -0.02 1.42 16 48 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -73.30 399.37 -1.76 -75.07 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -0.55 Total: 22.01 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 6.73 Total: 5.15 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -9.73 Total: -116.47 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.11 Total: -31.50 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.75 kcal Total: -73.30 -1.76 -75.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286836046.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.834 kcal (2) G-P(sol) polarization free energy of solvation -73.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds