Wall clock time and date at job start Sat Apr 11 2020 07:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99892 * 2 1 4 4 H 1.48505 * 109.47343 * 269.99632 * 3 2 1 5 5 H 1.48493 * 109.47456 * 30.00075 * 3 2 1 6 6 H 1.48504 * 109.46738 * 149.99991 * 3 2 1 7 7 C 1.38950 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00309 * 0.02562 * 7 2 1 9 9 N 1.37103 * 119.99631 * 179.97438 * 7 2 1 10 10 C 1.34775 * 119.99831 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99825 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00101 * 180.02562 * 10 9 7 13 13 N 1.46495 * 109.47119 * 180.02562 * 12 10 9 14 14 C 1.34779 * 119.99860 * 179.97438 * 13 12 10 15 15 O 1.21591 * 120.00264 * 0.02562 * 14 13 12 16 16 N 1.34785 * 119.99666 * 180.02562 * 14 13 12 17 17 C 1.40204 * 119.99399 * 184.45779 * 16 14 13 18 18 C 1.38657 * 120.09802 * 325.35587 * 17 16 14 19 19 C 1.38240 * 120.00149 * 180.02562 * 18 17 16 20 20 C 1.38275 * 120.20078 * 359.97438 * 19 18 17 21 21 C 1.38227 * 120.18850 * 359.97438 * 20 19 18 22 22 C 1.38705 * 119.99315 * 0.02562 * 21 20 19 23 23 N 1.39930 * 120.09359 * 180.02562 * 22 21 20 24 24 C 1.46840 * 111.00261 * 64.20861 * 23 22 21 25 25 C 1.53035 * 109.52322 * 174.16060 * 24 23 22 26 26 C 1.53116 * 109.28246 * 59.17874 * 25 24 23 27 27 C 1.53123 * 109.15781 * 302.34672 * 26 25 24 28 28 C 1.46844 * 110.99909 * 299.99335 * 23 22 21 29 29 H 0.97001 * 119.99859 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00096 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.46967 * 60.00464 * 12 10 9 32 32 H 1.09000 * 109.47134 * 300.00433 * 12 10 9 33 33 H 0.97004 * 120.00732 * 0.02562 * 13 12 10 34 34 H 0.96991 * 120.00180 * 4.45241 * 16 14 13 35 35 H 1.07998 * 119.99368 * 0.02735 * 18 17 16 36 36 H 1.08008 * 119.89567 * 180.27587 * 19 18 17 37 37 H 1.07999 * 119.90140 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99764 * 180.02562 * 21 20 19 39 39 H 1.08996 * 109.46537 * 294.17525 * 24 23 22 40 40 H 1.09006 * 109.46329 * 54.14308 * 24 23 22 41 41 H 1.09003 * 109.50588 * 299.23846 * 25 24 23 42 42 H 1.09007 * 109.54010 * 179.13956 * 25 24 23 43 43 H 1.08990 * 109.52837 * 182.44249 * 26 25 24 44 44 H 1.09002 * 109.57360 * 62.27628 * 26 25 24 45 45 H 1.08998 * 109.50223 * 297.71094 * 27 26 25 46 46 H 1.09002 * 109.53734 * 177.60894 * 27 26 25 47 47 H 1.08995 * 109.46685 * 305.86050 * 28 23 22 48 48 H 1.09005 * 109.46005 * 65.84058 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0014 9 7 3.3799 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3706 -0.0011 13 7 6.0490 -3.7518 -0.0017 14 6 7.3741 -3.9981 -0.0023 15 8 8.1643 -3.0739 -0.0019 16 7 7.8233 -5.2689 -0.0034 17 6 9.1983 -5.5263 0.0903 18 6 10.1089 -4.6660 -0.5041 19 6 11.4642 -4.9221 -0.4109 20 6 11.9163 -6.0346 0.2746 21 6 11.0157 -6.8970 0.8711 22 6 9.6542 -6.6477 0.7825 23 7 8.7406 -7.5191 1.3860 24 6 8.9020 -7.5225 2.8456 25 6 7.7971 -8.3700 3.4803 26 6 7.8798 -9.7986 2.9356 27 6 7.7575 -9.7626 1.4097 28 6 8.8635 -8.8747 0.8350 29 1 -0.4850 0.8401 -0.0004 30 1 3.8649 -0.3633 -0.0007 31 1 5.9240 -1.8569 0.8890 32 1 5.9241 -1.8567 -0.8910 33 1 5.4187 -4.4892 -0.0024 34 1 7.1953 -6.0052 -0.0689 35 1 9.7592 -3.7959 -1.0399 36 1 12.1722 -4.2484 -0.8708 37 1 12.9762 -6.2302 0.3440 38 1 11.3723 -7.7648 1.4060 39 1 9.8745 -7.9422 3.1025 40 1 8.8369 -6.5010 3.2205 41 1 6.8246 -7.9429 3.2352 42 1 7.9255 -8.3852 4.5626 43 1 7.0680 -10.3949 3.3521 44 1 8.8364 -10.2408 3.2140 45 1 6.7844 -9.3574 1.1321 46 1 7.8581 -10.7725 1.0120 47 1 8.7706 -8.8354 -0.2502 48 1 9.8363 -9.2882 1.1016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348062745.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:45 Heat of formation + Delta-G solvation = -27.562639 kcal Electronic energy + Delta-G solvation = -30002.011996 eV Core-core repulsion = 25863.855578 eV Total energy + Delta-G solvation = -4138.156418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94175 -39.75675 -38.53296 -37.86203 -34.77487 -34.51933 -33.88946 -33.75067 -31.80894 -31.15532 -30.06598 -29.15291 -27.45990 -24.71349 -24.41643 -23.36111 -22.94424 -21.63498 -20.68179 -19.87869 -19.64627 -18.82874 -18.28323 -17.69101 -17.03005 -15.83274 -15.73609 -15.40864 -15.28836 -15.18818 -14.98022 -14.81770 -14.57244 -14.25441 -14.11834 -13.89159 -13.79331 -13.66999 -13.35756 -13.14636 -12.77001 -12.50601 -12.44123 -12.17546 -12.16153 -12.01795 -11.71705 -11.53094 -11.24218 -11.06187 -10.77797 -10.71585 -10.64585 -10.38428 -10.06992 -9.99053 -9.70303 -8.97493 -8.89995 -8.78044 -8.76876 -8.31156 -8.06634 -6.41229 -3.93871 1.11879 1.25780 2.64616 2.99485 3.04192 3.12495 3.17769 3.47738 3.55831 3.70450 4.03165 4.22501 4.47240 4.56794 4.58071 4.60143 4.76025 4.91199 4.92126 5.05533 5.06499 5.13709 5.18101 5.26355 5.33761 5.42067 5.47027 5.54608 5.59168 5.60267 5.65287 5.75182 5.78431 5.82377 5.83821 5.90173 6.03732 6.11586 6.18882 6.38129 6.46287 6.59028 6.67757 6.76821 6.99699 7.24411 7.44317 7.99082 8.07327 8.43441 8.61778 8.81185 9.29231 9.62654 10.70912 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.013887 B = 0.002342 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.825988 B =11952.530075 C =13470.301275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.576 5.576 10 C 0.438 3.562 11 O -0.578 6.578 12 C 0.126 3.874 13 N -0.718 5.718 14 C 0.705 3.295 15 O -0.585 6.585 16 N -0.674 5.674 17 C 0.199 3.801 18 C -0.118 4.118 19 C -0.103 4.103 20 C -0.134 4.134 21 C -0.130 4.130 22 C 0.053 3.947 23 N -0.499 5.499 24 C 0.064 3.936 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.118 4.118 28 C 0.059 3.941 29 H 0.276 0.724 30 H 0.375 0.625 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.410 0.590 34 H 0.413 0.587 35 H 0.146 0.854 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.983 -16.274 2.735 28.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.224 3.776 11 O -0.463 6.463 12 C -0.003 4.003 13 N -0.375 5.375 14 C 0.406 3.594 15 O -0.463 6.463 16 N -0.321 5.321 17 C 0.102 3.898 18 C -0.139 4.139 19 C -0.122 4.122 20 C -0.154 4.154 21 C -0.151 4.151 22 C -0.044 4.044 23 N -0.221 5.221 24 C -0.062 4.062 25 C -0.156 4.156 26 C -0.159 4.159 27 C -0.156 4.156 28 C -0.067 4.067 29 H 0.086 0.914 30 H 0.208 0.792 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.248 0.752 34 H 0.250 0.750 35 H 0.164 0.836 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 22.436 -15.799 2.658 27.569 hybrid contribution 0.743 0.433 0.249 0.895 sum 23.179 -15.366 2.908 27.961 Atomic orbital electron populations 1.69619 1.05718 1.27819 1.48165 1.25067 0.95534 0.98177 0.97130 0.86671 0.79933 0.83754 0.79145 1.19384 1.19994 1.19186 1.19439 0.78936 0.96794 1.48663 0.86077 1.42112 1.07695 1.06119 1.65435 1.19628 0.88030 0.84898 0.85035 1.90542 1.69206 1.30898 1.55624 1.20839 0.93494 0.82572 1.03378 1.44739 1.04963 1.09606 1.78225 1.15824 0.82826 0.82821 0.77977 1.90894 1.54706 1.43011 1.57715 1.42431 1.06107 1.07306 1.76235 1.17363 0.82600 0.94365 0.95507 1.21383 0.92331 1.00467 0.99731 1.21087 0.95210 0.97041 0.98834 1.20954 0.99269 0.95471 0.99674 1.21334 0.92807 1.00071 1.00892 1.18482 0.89784 0.96122 1.00002 1.59439 1.49699 1.07955 1.04971 1.22108 0.97423 1.00787 0.85884 1.21614 0.99726 0.94970 0.99340 1.21575 1.01672 0.96878 0.95743 1.21613 0.99585 0.98918 0.95493 1.22170 0.97694 0.87290 0.99558 0.91382 0.79224 0.89734 0.89707 0.75209 0.75030 0.83602 0.85776 0.86273 0.86377 0.94588 0.90596 0.90696 0.91394 0.91671 0.92435 0.90741 0.91425 0.90617 0.94547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.88 13.96 55.50 0.77 -24.11 16 2 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.92 27.74 -169.99 -4.71 14.21 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 7 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 16 8 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 9 N -0.58 -13.28 5.09 -10.96 -0.06 -13.33 16 10 C 0.44 9.52 7.85 -10.99 -0.09 9.43 16 11 O -0.58 -14.44 15.24 5.55 0.08 -14.36 16 12 C 0.13 2.15 6.15 -5.20 -0.03 2.12 16 13 N -0.72 -11.40 5.53 -66.41 -0.37 -11.77 16 14 C 0.71 10.97 8.41 -86.91 -0.73 10.24 16 15 O -0.58 -10.52 13.76 5.29 0.07 -10.45 16 16 N -0.67 -8.62 5.18 -14.07 -0.07 -8.69 16 17 C 0.20 2.49 6.33 -83.42 -0.53 1.97 16 18 C -0.12 -1.49 8.70 -39.43 -0.34 -1.84 16 19 C -0.10 -1.06 10.04 -39.57 -0.40 -1.45 16 20 C -0.13 -1.22 10.04 -39.57 -0.40 -1.62 16 21 C -0.13 -1.23 8.70 -39.41 -0.34 -1.58 16 22 C 0.05 0.56 4.70 -83.54 -0.39 0.17 16 23 N -0.50 -4.71 4.11 -170.97 -0.70 -5.41 16 24 C 0.06 0.58 5.17 -3.84 -0.02 0.56 16 25 C -0.12 -0.93 6.09 -26.65 -0.16 -1.09 16 26 C -0.12 -0.82 6.00 -26.61 -0.16 -0.98 16 27 C -0.12 -0.83 6.09 -26.65 -0.16 -0.99 16 28 C 0.06 0.47 5.12 -3.84 -0.02 0.45 16 29 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.37 7.62 5.76 -40.82 -0.24 7.38 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.41 6.42 7.46 -40.82 -0.30 6.12 16 34 H 0.41 4.62 8.53 -40.82 -0.35 4.27 16 35 H 0.15 2.08 6.19 -52.49 -0.32 1.75 16 36 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.12 0.94 7.14 -52.49 -0.37 0.56 16 39 H 0.04 0.30 7.56 -51.93 -0.39 -0.09 16 40 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 48 H 0.04 0.27 7.34 -51.93 -0.38 -0.11 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -31.81 389.53 -10.12 -41.93 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -6.99 Total: 18.26 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -4.02 Total: 7.86 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -0.42 Total: -63.32 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: 0.16 Total: -24.81 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.21 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.81 -10.12 -41.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348062745.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.369 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds