Wall clock time and date at job start Sat Apr 11 2020 07:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99892 * 2 1 4 4 H 1.48505 * 109.47343 * 269.99632 * 3 2 1 5 5 H 1.48493 * 109.47456 * 30.00075 * 3 2 1 6 6 H 1.48504 * 109.46738 * 149.99991 * 3 2 1 7 7 C 1.38950 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00309 * 0.02562 * 7 2 1 9 9 N 1.37103 * 119.99631 * 179.97438 * 7 2 1 10 10 C 1.34775 * 119.99831 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99825 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00101 * 180.02562 * 10 9 7 13 13 N 1.46495 * 109.47119 * 180.02562 * 12 10 9 14 14 C 1.34779 * 119.99860 * 179.97438 * 13 12 10 15 15 O 1.21591 * 120.00264 * 0.02562 * 14 13 12 16 16 N 1.34785 * 119.99666 * 180.02562 * 14 13 12 17 17 C 1.40204 * 119.99399 * 184.45779 * 16 14 13 18 18 C 1.38657 * 120.09802 * 325.35587 * 17 16 14 19 19 C 1.38240 * 120.00149 * 180.02562 * 18 17 16 20 20 C 1.38275 * 120.20078 * 359.97438 * 19 18 17 21 21 C 1.38227 * 120.18850 * 359.97438 * 20 19 18 22 22 C 1.38705 * 119.99315 * 0.02562 * 21 20 19 23 23 N 1.39930 * 120.09359 * 180.02562 * 22 21 20 24 24 C 1.46840 * 111.00261 * 64.20861 * 23 22 21 25 25 C 1.53035 * 109.52322 * 174.16060 * 24 23 22 26 26 C 1.53116 * 109.28246 * 59.17874 * 25 24 23 27 27 C 1.53123 * 109.15781 * 302.34672 * 26 25 24 28 28 C 1.46844 * 110.99909 * 299.99335 * 23 22 21 29 29 H 0.97001 * 119.99859 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00096 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.46967 * 60.00464 * 12 10 9 32 32 H 1.09000 * 109.47134 * 300.00433 * 12 10 9 33 33 H 0.97004 * 120.00732 * 0.02562 * 13 12 10 34 34 H 0.96991 * 120.00180 * 4.45241 * 16 14 13 35 35 H 1.07998 * 119.99368 * 0.02735 * 18 17 16 36 36 H 1.08008 * 119.89567 * 180.27587 * 19 18 17 37 37 H 1.07999 * 119.90140 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99764 * 180.02562 * 21 20 19 39 39 H 1.08996 * 109.46537 * 294.17525 * 24 23 22 40 40 H 1.09006 * 109.46329 * 54.14308 * 24 23 22 41 41 H 1.09003 * 109.50588 * 299.23846 * 25 24 23 42 42 H 1.09007 * 109.54010 * 179.13956 * 25 24 23 43 43 H 1.08990 * 109.52837 * 182.44249 * 26 25 24 44 44 H 1.09002 * 109.57360 * 62.27628 * 26 25 24 45 45 H 1.08998 * 109.50223 * 297.71094 * 27 26 25 46 46 H 1.09002 * 109.53734 * 177.60894 * 27 26 25 47 47 H 1.08995 * 109.46685 * 305.86050 * 28 23 22 48 48 H 1.09005 * 109.46005 * 65.84058 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0014 9 7 3.3799 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3706 -0.0011 13 7 6.0490 -3.7518 -0.0017 14 6 7.3741 -3.9981 -0.0023 15 8 8.1643 -3.0739 -0.0019 16 7 7.8233 -5.2689 -0.0034 17 6 9.1983 -5.5263 0.0903 18 6 10.1089 -4.6660 -0.5041 19 6 11.4642 -4.9221 -0.4109 20 6 11.9163 -6.0346 0.2746 21 6 11.0157 -6.8970 0.8711 22 6 9.6542 -6.6477 0.7825 23 7 8.7406 -7.5191 1.3860 24 6 8.9020 -7.5225 2.8456 25 6 7.7971 -8.3700 3.4803 26 6 7.8798 -9.7986 2.9356 27 6 7.7575 -9.7626 1.4097 28 6 8.8635 -8.8747 0.8350 29 1 -0.4850 0.8401 -0.0004 30 1 3.8649 -0.3633 -0.0007 31 1 5.9240 -1.8569 0.8890 32 1 5.9241 -1.8567 -0.8910 33 1 5.4187 -4.4892 -0.0024 34 1 7.1953 -6.0052 -0.0689 35 1 9.7592 -3.7959 -1.0399 36 1 12.1722 -4.2484 -0.8708 37 1 12.9762 -6.2302 0.3440 38 1 11.3723 -7.7648 1.4060 39 1 9.8745 -7.9422 3.1025 40 1 8.8369 -6.5010 3.2205 41 1 6.8246 -7.9429 3.2352 42 1 7.9255 -8.3852 4.5626 43 1 7.0680 -10.3949 3.3521 44 1 8.8364 -10.2408 3.2140 45 1 6.7844 -9.3574 1.1321 46 1 7.8581 -10.7725 1.0120 47 1 8.7706 -8.8354 -0.2502 48 1 9.8363 -9.2882 1.1016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348062745.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:44 Heat of formation + Delta-G solvation = -50.015686 kcal Electronic energy + Delta-G solvation = -30002.985633 eV Core-core repulsion = 25863.855578 eV Total energy + Delta-G solvation = -4139.130055 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.91845 -40.85753 -40.13822 -38.72017 -36.32182 -35.73163 -35.37903 -34.55487 -33.83177 -31.78297 -31.00114 -30.05081 -28.86677 -26.24313 -25.37947 -23.99270 -23.90874 -22.44557 -21.80905 -21.47464 -20.62510 -20.45923 -19.56434 -18.74865 -17.86504 -17.45483 -17.01658 -16.82948 -16.41979 -16.21319 -15.97689 -15.78622 -15.72607 -15.44045 -15.23406 -14.96601 -14.73177 -14.51512 -14.41036 -14.30590 -14.01771 -14.01150 -13.79612 -13.44241 -13.09043 -12.96507 -12.83261 -12.50158 -12.44456 -12.16125 -12.00081 -11.64143 -11.57910 -11.48671 -11.38492 -11.33423 -11.08208 -10.65988 -10.34314 -10.23829 -9.70685 -9.46942 -8.98504 -8.45375 -6.07367 0.30903 0.41988 1.31438 1.34383 1.43294 1.48662 1.78628 2.02703 2.20767 2.73296 2.77758 2.86856 3.10950 3.20328 3.85193 3.96584 3.97257 3.98771 4.04749 4.20416 4.29790 4.32582 4.40108 4.42791 4.42968 4.52504 4.53650 4.62784 4.69233 4.79926 4.89540 4.90278 4.99282 5.12236 5.21009 5.23769 5.25261 5.29539 5.40731 5.48393 5.49712 5.56687 5.64692 5.87579 5.89373 5.94319 6.02250 6.45211 6.48948 6.78222 6.89202 7.28077 7.41536 7.78153 8.71067 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.013887 B = 0.002342 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.825988 B =11952.530075 C =13470.301275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.232 1.232 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.577 5.577 10 C 0.446 3.554 11 O -0.614 6.614 12 C 0.139 3.861 13 N -0.721 5.721 14 C 0.707 3.293 15 O -0.609 6.609 16 N -0.663 5.663 17 C 0.170 3.830 18 C -0.137 4.137 19 C -0.106 4.106 20 C -0.125 4.125 21 C -0.130 4.130 22 C 0.053 3.947 23 N -0.509 5.509 24 C 0.067 3.933 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.116 4.116 28 C 0.061 3.939 29 H 0.281 0.719 30 H 0.392 0.608 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.410 0.590 34 H 0.419 0.581 35 H 0.124 0.876 36 H 0.143 0.857 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.588 -16.351 3.227 31.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.208 4.208 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.156 1.156 7 C -0.460 4.460 8 H 0.081 0.919 9 N -0.217 5.217 10 C 0.233 3.767 11 O -0.500 6.500 12 C 0.010 3.990 13 N -0.378 5.378 14 C 0.407 3.593 15 O -0.489 6.489 16 N -0.310 5.310 17 C 0.074 3.926 18 C -0.158 4.158 19 C -0.125 4.125 20 C -0.145 4.145 21 C -0.150 4.150 22 C -0.043 4.043 23 N -0.231 5.231 24 C -0.060 4.060 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.154 4.154 28 C -0.065 4.065 29 H 0.091 0.909 30 H 0.228 0.772 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.248 0.752 34 H 0.256 0.744 35 H 0.142 0.858 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.090 0.910 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 26.077 -15.920 3.151 30.715 hybrid contribution -0.344 0.269 0.100 0.447 sum 25.733 -15.652 3.251 30.294 Atomic orbital electron populations 1.69782 1.08038 1.29453 1.49305 1.26066 0.96428 1.02594 0.95716 0.85448 0.79591 0.77021 0.80090 1.18054 1.19863 1.15558 1.19026 0.80941 0.95263 1.50743 0.91851 1.41908 1.06125 1.07403 1.66289 1.20474 0.89988 0.83882 0.82325 1.90531 1.70767 1.32323 1.56353 1.20731 0.89319 0.83718 1.05194 1.44692 1.05247 1.09133 1.78694 1.15842 0.82239 0.83423 0.77752 1.90877 1.55108 1.43981 1.58936 1.42272 1.06715 1.06434 1.75579 1.17609 0.82118 0.95642 0.97226 1.21335 0.93662 1.00202 1.00601 1.21327 0.94446 0.97858 0.98859 1.21308 1.00784 0.94346 0.98027 1.21603 0.92170 1.00672 1.00557 1.18584 0.90661 0.95599 0.99459 1.59411 1.49762 1.08711 1.05219 1.22076 0.98354 0.99943 0.85587 1.21595 0.98407 0.95510 0.99930 1.21557 1.02454 0.96050 0.95425 1.21606 0.98597 0.99436 0.95751 1.22197 0.98501 0.86491 0.99324 0.90924 0.77193 0.87958 0.87607 0.75195 0.74354 0.85779 0.83918 0.83282 0.84344 0.93454 0.92528 0.92426 0.90450 0.91158 0.91369 0.92030 0.89910 0.90990 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.46 13.96 21.66 0.30 -54.16 16 2 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 3 Si 0.96 38.11 27.74 68.60 1.90 40.02 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.23 -7.88 6.52 99.48 0.65 -7.23 16 7 C -0.33 -18.77 10.16 84.04 0.85 -17.92 16 8 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 9 N -0.58 -26.51 5.09 -306.98 -1.56 -28.07 16 10 C 0.45 19.43 7.85 87.66 0.69 20.11 16 11 O -0.61 -31.65 15.24 -3.07 -0.05 -31.69 16 12 C 0.14 4.57 6.15 85.63 0.53 5.10 16 13 N -0.72 -22.67 5.53 -482.29 -2.67 -25.34 16 14 C 0.71 21.89 8.41 179.05 1.51 23.40 16 15 O -0.61 -21.71 13.76 -4.00 -0.06 -21.76 16 16 N -0.66 -17.05 5.18 -316.67 -1.64 -18.69 16 17 C 0.17 4.22 6.33 38.19 0.24 4.46 16 18 C -0.14 -3.42 8.70 22.37 0.19 -3.23 16 19 C -0.11 -1.99 10.04 22.28 0.22 -1.77 16 20 C -0.13 -1.91 10.04 22.28 0.22 -1.69 16 21 C -0.13 -2.11 8.70 22.38 0.19 -1.91 16 22 C 0.05 1.08 4.70 38.25 0.18 1.26 16 23 N -0.51 -9.07 4.11 -694.83 -2.86 -11.93 16 24 C 0.07 1.12 5.17 86.33 0.45 1.56 16 25 C -0.12 -1.71 6.09 30.64 0.19 -1.53 16 26 C -0.12 -1.37 6.00 30.67 0.18 -1.19 16 27 C -0.12 -1.44 6.09 30.65 0.19 -1.25 16 28 C 0.06 0.86 5.12 86.33 0.44 1.30 16 29 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.39 15.10 5.76 -92.71 -0.53 14.56 16 31 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.41 13.01 7.46 -92.71 -0.69 12.32 16 34 H 0.42 9.51 8.53 -92.71 -0.79 8.72 16 35 H 0.12 3.61 6.19 -2.91 -0.02 3.59 16 36 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.14 1.69 7.14 -2.91 -0.02 1.66 16 39 H 0.05 0.68 7.56 -2.39 -0.02 0.66 16 40 H 0.06 1.16 8.11 -2.38 -0.02 1.14 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.07 1.06 8.11 -2.39 -0.02 1.04 16 48 H 0.05 0.57 7.34 -2.38 -0.02 0.55 16 Total: -1.00 -72.84 389.53 -0.94 -73.77 By element: Atomic # 1 Polarization: 52.19 SS G_CDS: -1.06 Total: 51.13 kcal Atomic # 6 Polarization: 19.97 SS G_CDS: 6.75 Total: 26.72 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -8.43 Total: -138.18 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -0.10 Total: -53.46 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 1.90 Total: 40.02 kcal Total: -72.84 -0.94 -73.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348062745.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.758 kcal (2) G-P(sol) polarization free energy of solvation -72.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds