Wall clock time and date at job start Sat Apr 11 2020 07:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00111 * 2 1 4 4 H 1.48498 * 109.47529 * 270.00256 * 3 2 1 5 5 H 1.48498 * 109.47271 * 30.00370 * 3 2 1 6 6 H 1.48503 * 109.47132 * 150.00482 * 3 2 1 7 7 C 1.38946 * 119.99627 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99685 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00510 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00074 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00528 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99649 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.46864 * 179.97438 * 12 10 9 14 14 C 1.47961 * 110.99951 * 170.00125 * 13 12 10 15 15 C 1.53933 * 86.18061 * 222.41856 * 14 13 12 16 16 C 1.53001 * 113.73803 * 138.07845 * 15 14 13 17 17 N 1.46498 * 109.46931 * 174.99905 * 16 15 14 18 18 C 1.34774 * 119.99920 * 180.02562 * 17 16 15 19 19 O 1.21705 * 119.99776 * 359.97438 * 18 17 16 20 20 C 1.46672 * 120.00526 * 179.97438 * 18 17 16 21 21 C 1.37758 * 126.22833 * 180.02562 * 20 18 17 22 22 C 1.40112 * 107.10344 * 179.97438 * 21 20 18 23 23 C 1.35569 * 108.07665 * 359.97438 * 22 21 20 24 24 N 1.36009 * 108.63730 * 359.93452 * 23 22 21 25 25 H 0.97003 * 125.63351 * 179.97438 * 24 23 22 26 26 C 1.51506 * 110.16764 * 179.97438 * 23 22 21 27 27 C 1.54403 * 105.02700 * 343.02137 * 26 23 22 28 28 C 1.51353 * 141.73449 * 179.97438 * 22 21 20 29 29 C 1.47958 * 111.00110 * 70.63952 * 13 12 10 30 30 H 0.97002 * 119.99836 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99661 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46936 * 59.99724 * 12 10 9 33 33 H 1.09002 * 109.46937 * 299.99604 * 12 10 9 34 34 H 1.08988 * 113.76264 * 108.09582 * 14 13 12 35 35 H 1.09003 * 113.75730 * 336.72817 * 14 13 12 36 36 H 1.09004 * 113.73080 * 269.26001 * 15 14 13 37 37 H 1.08996 * 109.46984 * 54.99447 * 16 15 14 38 38 H 1.08999 * 109.46530 * 294.99742 * 16 15 14 39 39 H 0.96997 * 120.00285 * 359.97438 * 17 16 15 40 40 H 1.07994 * 126.44903 * 359.94701 * 21 20 18 41 41 H 1.09001 * 110.32479 * 224.13749 * 26 23 22 42 42 H 1.08993 * 110.41568 * 101.95881 * 26 23 22 43 43 H 1.08993 * 110.92624 * 267.66498 * 27 26 23 44 44 H 1.09004 * 110.94913 * 144.03612 * 27 26 23 45 45 H 1.09002 * 110.34086 * 78.11741 * 28 22 21 46 46 H 1.09000 * 110.33788 * 315.97174 * 28 22 21 47 47 H 1.09001 * 113.75679 * 23.25988 * 29 13 12 48 48 H 1.08999 * 113.75874 * 251.89879 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4401 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0011 12 6 1.2436 -4.8629 -0.0022 13 7 2.1983 -5.9795 -0.0027 14 6 1.5088 -7.2667 0.2366 15 6 2.6854 -7.6056 1.1696 16 6 2.2616 -8.2843 2.4737 17 7 3.4535 -8.6711 3.2325 18 6 3.3231 -9.2898 4.4228 19 8 2.2152 -9.5265 4.8674 20 6 4.5163 -9.6776 5.1824 21 6 4.5325 -10.3127 6.4048 22 6 5.8764 -10.4899 6.7593 23 6 6.6444 -9.9722 5.7693 24 7 5.8287 -9.4754 4.8011 25 1 6.1205 -9.0481 3.9806 26 6 8.1122 -10.1387 6.1057 27 6 8.1447 -10.4339 7.6209 28 6 6.7511 -11.0555 7.8574 29 6 2.8909 -6.0856 1.3005 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 -0.0016 32 1 0.6173 -4.9204 -0.8924 33 1 0.6167 -4.9209 0.8876 34 1 1.4501 -7.9040 -0.6455 35 1 0.5544 -7.1642 0.7530 36 1 3.5069 -8.1196 0.6706 37 1 1.6716 -9.1721 2.2461 38 1 1.6628 -7.5920 3.0655 39 1 4.3365 -8.4828 2.8780 40 1 3.6714 -10.6163 6.9815 41 1 8.6573 -9.2204 5.8870 42 1 8.5379 -10.9729 5.5481 43 1 8.2632 -9.5145 8.1942 44 1 8.9343 -11.1455 7.8625 45 1 6.8028 -12.1415 7.7792 46 1 6.3671 -10.7646 8.8352 47 1 2.3407 -5.6377 2.1279 48 1 3.9365 -5.7794 1.2682 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732137194.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:05 Heat of formation + Delta-G solvation = 13.305499 kcal Electronic energy + Delta-G solvation = -28790.923623 eV Core-core repulsion = 24654.539380 eV Total energy + Delta-G solvation = -4136.384243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.90148 -40.28747 -39.26501 -37.74107 -36.31328 -35.01733 -33.91859 -31.45989 -31.34127 -30.91536 -28.74605 -27.63724 -27.02453 -26.02768 -24.93957 -23.33490 -22.23335 -21.44159 -20.52236 -19.68777 -19.30974 -19.22626 -18.35798 -17.86504 -16.47554 -16.24304 -16.17277 -16.00803 -15.56697 -15.30114 -14.96682 -14.69245 -14.38215 -14.09305 -13.83391 -13.80539 -13.63592 -13.37765 -13.34003 -13.13354 -12.87374 -12.54823 -12.19929 -12.14994 -11.76828 -11.74952 -11.57534 -11.51821 -11.37784 -11.37298 -11.09392 -10.71846 -10.66575 -10.41733 -10.29516 -10.22597 -9.52807 -9.40134 -9.11248 -8.69936 -8.26908 -8.25557 -7.98795 -6.43865 -3.84856 1.15376 2.32574 2.47546 2.82642 3.15602 3.15888 3.24619 3.30138 3.85927 3.94886 4.08689 4.18280 4.24473 4.33800 4.55175 4.57916 4.60209 4.80702 4.90491 4.97765 5.04529 5.17082 5.20624 5.25978 5.30058 5.31532 5.37444 5.47424 5.50379 5.55208 5.60286 5.69004 5.70860 5.72661 5.79714 5.80737 5.87194 5.97804 6.08215 6.23241 6.25847 6.42555 6.57720 6.65279 7.01502 7.15415 7.22881 7.52790 7.90915 8.03131 8.58759 9.15444 9.51613 10.03083 10.73833 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.013491 B = 0.001776 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.895267 B =15761.616988 C =16967.367718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.581 6.581 12 C 0.010 3.990 13 N -0.453 5.453 14 C 0.009 3.991 15 C -0.135 4.135 16 C 0.129 3.871 17 N -0.727 5.727 18 C 0.590 3.410 19 O -0.529 6.529 20 C -0.049 4.049 21 C -0.081 4.081 22 C -0.199 4.199 23 C 0.022 3.978 24 N -0.525 5.525 25 H 0.413 0.587 26 C -0.043 4.043 27 C -0.116 4.116 28 C -0.050 4.050 29 C 0.026 3.974 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.396 0.604 40 H 0.147 0.853 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.192 -23.392 11.310 28.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.228 3.772 11 O -0.465 6.465 12 C -0.122 4.122 13 N -0.176 5.176 14 C -0.120 4.120 15 C -0.155 4.155 16 C 0.006 3.994 17 N -0.378 5.378 18 C 0.378 3.622 19 O -0.405 6.405 20 C -0.160 4.160 21 C -0.107 4.107 22 C -0.205 4.205 23 C -0.096 4.096 24 N -0.120 5.120 25 H 0.250 0.750 26 C -0.081 4.081 27 C -0.153 4.153 28 C -0.088 4.088 29 C -0.103 4.103 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.229 0.771 40 H 0.165 0.835 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.394 -23.167 10.841 28.001 hybrid contribution -0.381 1.335 -0.103 1.393 sum 11.013 -21.832 10.738 26.706 Atomic orbital electron populations 1.69614 1.05931 1.28184 1.50497 1.25269 0.95650 0.99739 0.97304 0.85852 0.79197 0.80792 0.78408 1.20372 1.20903 1.19460 1.19688 0.93335 0.82220 1.47676 0.87965 1.41873 1.09198 1.04607 1.64352 1.19681 0.88360 0.84520 0.84595 1.90510 1.13655 1.87036 1.55314 1.22468 0.95171 0.92608 1.01970 1.68403 1.18459 0.99992 1.30709 1.23961 0.95799 0.93549 0.98730 1.23359 1.00126 0.97017 0.94951 1.21484 0.86997 0.99748 0.91175 1.45872 1.10206 1.61020 1.20748 1.16984 0.87360 0.77526 0.80329 1.90860 1.25297 1.55367 1.69021 1.20346 0.82303 1.13959 0.99408 1.20689 0.96022 1.00066 0.93932 1.20373 0.92947 1.08089 0.99081 1.21368 0.95631 1.02063 0.90582 1.41497 1.04787 1.47220 1.18539 0.74964 1.20730 0.87922 1.02393 0.97070 1.22337 0.97311 1.01524 0.94169 1.20478 0.92307 0.99537 0.96455 1.23873 1.02291 0.92460 0.91662 0.91845 0.77475 0.89092 0.92745 0.89044 0.90995 0.87804 0.90826 0.90894 0.77069 0.83513 0.90656 0.89820 0.90580 0.90036 0.90852 0.91070 0.91381 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.39 9.68 -14.94 -0.14 -8.53 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 10 C 0.44 10.50 7.59 -10.98 -0.08 10.42 16 11 O -0.58 -15.69 15.13 5.55 0.08 -15.60 16 12 C 0.01 0.17 5.31 -4.97 -0.03 0.15 16 13 N -0.45 -7.29 5.95 -239.74 -1.43 -8.71 16 14 C 0.01 0.11 7.54 -2.77 -0.02 0.09 16 15 C -0.14 -1.42 3.94 -89.69 -0.35 -1.77 16 16 C 0.13 1.33 5.53 -4.04 -0.02 1.31 16 17 N -0.73 -7.06 5.55 -61.62 -0.34 -7.40 16 18 C 0.59 7.21 7.79 -12.86 -0.10 7.11 16 19 O -0.53 -8.35 16.88 5.18 0.09 -8.26 16 20 C -0.05 -0.53 7.07 -81.79 -0.58 -1.10 16 21 C -0.08 -0.89 10.66 -39.05 -0.42 -1.30 16 22 C -0.20 -1.85 6.89 -104.55 -0.72 -2.57 16 23 C 0.02 0.18 8.02 -81.30 -0.65 -0.47 16 24 N -0.52 -4.27 6.03 -5.24 -0.03 -4.30 16 25 H 0.41 2.23 8.20 -40.82 -0.33 1.90 16 26 C -0.04 -0.22 6.79 -26.75 -0.18 -0.40 16 27 C -0.12 -0.53 7.12 -25.25 -0.18 -0.71 16 28 C -0.05 -0.32 6.78 -26.82 -0.18 -0.50 16 29 C 0.03 0.38 6.31 -2.77 -0.02 0.36 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 32 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.05 0.87 7.69 -51.93 -0.40 0.47 16 34 H 0.09 0.93 8.14 -51.94 -0.42 0.51 16 35 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.85 7.84 -51.93 -0.41 0.44 16 39 H 0.40 2.87 7.61 -40.82 -0.31 2.55 16 40 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.07 1.04 7.53 -51.93 -0.39 0.64 16 48 H 0.09 1.49 8.09 -51.93 -0.42 1.07 16 LS Contribution 398.80 15.07 6.01 6.01 Total: -1.00 -35.33 398.80 -10.90 -46.23 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -7.15 Total: 11.69 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -3.77 Total: 2.56 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -1.13 Total: -58.72 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.17 Total: -23.86 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.33 -10.90 -46.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732137194.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.531 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds