Wall clock time and date at job start Sat Apr 11 2020 07:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 114.00098 * 2 1 4 4 C 1.52994 * 109.47020 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47114 * 64.99870 * 4 3 2 6 6 C 1.36933 * 120.00408 * 274.46376 * 5 4 3 7 7 H 1.07996 * 119.99975 * 146.16787 * 6 5 4 8 8 C 1.38809 * 119.99476 * 326.16886 * 6 5 4 9 9 N 1.31617 * 120.00537 * 335.31287 * 8 6 5 10 10 Si 1.86804 * 119.99768 * 155.31183 * 8 6 5 11 11 H 1.48503 * 109.47163 * 89.99834 * 10 8 6 12 12 H 1.48501 * 109.47092 * 210.00061 * 10 8 6 13 13 H 1.48503 * 109.47262 * 329.99778 * 10 8 6 14 14 C 1.46511 * 119.99904 * 94.46354 * 5 4 3 15 15 C 1.52998 * 109.46807 * 270.00046 * 14 5 4 16 16 N 1.46497 * 109.46780 * 179.97438 * 15 14 5 17 17 C 1.34778 * 120.00111 * 179.97438 * 16 15 14 18 18 O 1.21279 * 120.00198 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00221 * 179.97438 * 17 16 15 20 20 C 1.50701 * 109.47193 * 180.02562 * 19 17 16 21 21 C 1.33998 * 126.90432 * 265.02962 * 20 19 17 22 22 O 1.34453 * 110.14812 * 179.97438 * 21 20 19 23 23 C 1.34803 * 110.89518 * 0.02562 * 22 21 20 24 24 C 1.38943 * 133.50203 * 180.02562 * 23 22 21 25 25 C 1.37842 * 119.82132 * 179.97438 * 24 23 22 26 26 C 1.38742 * 120.68427 * 0.02562 * 25 24 23 27 27 C 1.36744 * 120.42037 * 359.97438 * 26 25 24 28 28 C 1.39407 * 119.71016 * 359.97438 * 27 26 25 29 29 H 1.08994 * 109.46945 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46859 * 300.00248 * 1 2 3 31 31 H 1.08996 * 109.46994 * 60.00063 * 1 2 3 32 32 H 1.08994 * 109.47121 * 59.99464 * 3 2 1 33 33 H 1.09003 * 109.46584 * 300.00065 * 3 2 1 34 34 H 1.08999 * 109.47304 * 305.00174 * 4 3 2 35 35 H 1.09007 * 109.47047 * 184.99525 * 4 3 2 36 36 H 0.97003 * 120.00790 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.46645 * 149.99923 * 14 5 4 38 38 H 1.08996 * 109.46821 * 29.99780 * 14 5 4 39 39 H 1.09002 * 109.47209 * 59.99909 * 15 14 5 40 40 H 1.08999 * 109.47364 * 299.99997 * 15 14 5 41 41 H 0.96999 * 120.00020 * 0.02562 * 16 15 14 42 42 H 1.09002 * 109.47071 * 60.00363 * 19 17 16 43 43 H 1.08999 * 109.47312 * 300.00568 * 19 17 16 44 44 H 1.07999 * 124.92678 * 359.95191 * 21 20 19 45 45 H 1.08005 * 120.08798 * 0.22721 * 24 23 22 46 46 H 1.07998 * 119.66040 * 180.02562 * 25 24 23 47 47 H 1.08005 * 119.79000 * 179.97438 * 26 25 24 48 48 H 1.07994 * 120.14083 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0103 -0.8004 -1.3639 7 1 3.7920 -1.2692 -2.3120 8 6 4.3250 -1.5806 -0.2599 9 7 5.0414 -1.0743 0.7213 10 14 3.7315 -3.3494 -0.1666 11 1 4.7465 -4.2450 -0.7776 12 1 3.5279 -3.7289 1.2546 13 1 2.4484 -3.4806 -0.9026 14 6 4.3820 1.4028 -2.3816 15 6 3.1636 1.7013 -3.2576 16 7 3.5688 2.5406 -4.3879 17 6 2.6553 2.9314 -5.2986 18 8 1.4978 2.5886 -5.1821 19 6 3.0719 3.7953 -6.4610 20 6 1.8719 4.0892 -7.3239 21 6 1.4859 3.4215 -8.4197 22 8 0.3683 3.9706 -8.9269 23 6 -0.0287 5.0244 -8.1859 24 6 -1.0940 5.9116 -8.2782 25 6 -1.2352 6.9131 -7.3417 26 6 -0.3230 7.0466 -6.3049 27 6 0.7324 6.1840 -6.1958 28 6 0.8910 5.1642 -7.1330 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8508 0.5685 0.8427 35 1 3.9785 2.1766 0.0901 36 1 5.2616 -1.6197 1.4927 37 1 5.1341 0.8789 -2.9714 38 1 4.7993 2.3381 -2.0088 39 1 2.4115 2.2251 -2.6677 40 1 2.7462 0.7659 -3.6304 41 1 4.4946 2.8145 -4.4812 42 1 3.8247 3.2724 -7.0509 43 1 3.4884 4.7308 -6.0875 44 1 1.9984 2.5666 -8.8355 45 1 -1.8118 5.8142 -9.0794 46 1 -2.0645 7.6010 -7.4158 47 1 -0.4473 7.8369 -5.5793 48 1 1.4395 6.2919 -5.3867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734578871.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:08 Heat of formation + Delta-G solvation = -25.366498 kcal Electronic energy + Delta-G solvation = -29929.929537 eV Core-core repulsion = 25759.575600 eV Total energy + Delta-G solvation = -4170.353937 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.60149 -39.38014 -38.01271 -37.24345 -35.76965 -34.19314 -33.96733 -31.43644 -30.78891 -30.17018 -29.45515 -28.30704 -26.84330 -25.59556 -23.88546 -23.47572 -22.47206 -21.91741 -20.88701 -20.38015 -19.68657 -17.53153 -17.24151 -17.03554 -16.67298 -16.05659 -15.98077 -15.75518 -15.38078 -15.25404 -14.87616 -14.54955 -14.31526 -14.01996 -13.95061 -13.85038 -13.43932 -13.27731 -13.21470 -12.78617 -12.60416 -12.44864 -12.23496 -11.93294 -11.80476 -11.72299 -11.16505 -11.06068 -10.84555 -10.74668 -10.63654 -10.54190 -10.24617 -10.02770 -9.95484 -9.70121 -9.62937 -8.81789 -8.79085 -8.61630 -8.39177 -8.29913 -6.61678 -5.71429 -3.24068 0.75876 1.20245 2.13563 2.65160 2.82989 3.42864 3.46733 3.53417 3.60783 3.64347 4.27261 4.36863 4.59819 4.67335 4.76407 4.77482 4.83757 5.04359 5.14627 5.20568 5.28277 5.29334 5.38896 5.43249 5.55858 5.72041 5.79401 5.82635 5.87173 5.93074 6.04747 6.09098 6.11761 6.19289 6.23928 6.27572 6.30633 6.32245 6.45917 6.58406 6.64873 6.70095 6.70444 6.95048 7.00543 7.67692 7.75801 7.89291 8.13816 8.45864 8.56910 9.21877 9.88321 10.38691 11.30176 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.015936 B = 0.002282 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.606739 B =12266.205872 C =12737.048896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.046 3.954 4 C 0.137 3.863 5 N -0.571 5.571 6 C -0.245 4.245 7 H 0.058 0.942 8 C 0.023 3.977 9 N -0.890 5.890 10 Si 0.898 3.102 11 H -0.292 1.292 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.138 3.862 15 C 0.096 3.904 16 N -0.726 5.726 17 C 0.505 3.495 18 O -0.534 6.534 19 C -0.070 4.070 20 C -0.155 4.155 21 C 0.018 3.982 22 O -0.193 6.193 23 C 0.050 3.950 24 C -0.108 4.108 25 C -0.097 4.097 26 C -0.137 4.137 27 C -0.067 4.067 28 C -0.112 4.112 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.029 0.971 32 H 0.023 0.977 33 H 0.028 0.972 34 H 0.108 0.892 35 H 0.040 0.960 36 H 0.253 0.747 37 H 0.055 0.945 38 H 0.038 0.962 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.397 0.603 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.207 0.793 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.128 0.872 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.825 16.438 -15.052 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C -0.033 4.033 4 C 0.010 3.990 5 N -0.290 5.290 6 C -0.374 4.374 7 H 0.075 0.925 8 C -0.177 4.177 9 N -0.533 5.533 10 Si 0.728 3.272 11 H -0.219 1.219 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.010 3.990 15 C -0.029 4.029 16 N -0.377 5.377 17 C 0.290 3.710 18 O -0.411 6.411 19 C -0.111 4.111 20 C -0.157 4.157 21 C -0.047 4.047 22 O -0.094 6.094 23 C 0.003 3.997 24 C -0.127 4.127 25 C -0.115 4.115 26 C -0.155 4.155 27 C -0.085 4.085 28 C -0.113 4.113 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.125 0.875 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.230 0.770 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.224 0.776 45 H 0.148 0.852 46 H 0.151 0.849 47 H 0.146 0.854 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.614 15.824 -15.001 22.785 hybrid contribution -0.214 -0.604 0.260 0.692 sum -6.827 15.220 -14.741 22.261 Atomic orbital electron populations 1.22636 0.84354 1.01442 0.98416 1.88233 1.16436 1.27418 1.94794 1.23453 0.98654 0.84330 0.96834 1.21162 0.87900 0.96516 0.93395 1.43591 1.74053 1.02394 1.09010 1.18794 1.40943 0.80711 0.96926 0.92477 1.24871 0.96895 0.97678 0.98257 1.69964 1.36331 1.36754 1.10285 0.86393 0.79073 0.84895 0.76848 1.21914 1.21700 1.20293 1.20999 0.92768 0.94726 0.90469 1.22456 1.00533 0.93666 0.86288 1.46120 1.11649 1.53199 1.26768 1.20489 0.86069 0.80961 0.83458 1.90730 1.18619 1.55996 1.75730 1.20006 0.95400 1.01017 0.94634 1.20423 0.99149 0.97955 0.98183 1.23700 0.86801 0.98537 0.95652 1.83995 1.38329 1.38329 1.48771 1.19604 0.97543 0.90241 0.92329 1.19915 0.96362 0.94736 1.01660 1.20899 0.99307 0.97321 0.94017 1.20766 0.95319 1.00289 0.99164 1.20281 0.98000 0.93050 0.97153 1.19730 0.96344 0.97808 0.97379 0.90793 0.95608 0.95216 0.95897 0.95344 0.87463 0.94136 0.93741 0.92697 0.94366 0.92518 0.91708 0.77021 0.87755 0.87963 0.77637 0.85184 0.84916 0.85426 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.35 -8.10 9.96 -35.23 -0.35 -8.45 16 3 C 0.05 0.97 6.28 37.15 0.23 1.21 16 4 C 0.14 3.13 5.83 -4.04 -0.02 3.11 16 5 N -0.57 -13.64 2.45 -173.24 -0.43 -14.06 16 6 C -0.24 -6.60 8.74 -15.06 -0.13 -6.73 16 7 H 0.06 1.57 7.94 -52.49 -0.42 1.16 16 8 C 0.02 0.63 4.95 -17.43 -0.09 0.54 16 9 N -0.89 -25.41 11.36 55.49 0.63 -24.78 16 10 Si 0.90 22.46 29.62 -169.99 -5.04 17.42 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.14 2.65 5.82 -4.04 -0.02 2.63 16 15 C 0.10 1.73 6.00 -4.04 -0.02 1.71 16 16 N -0.73 -9.95 5.56 -60.30 -0.33 -10.29 16 17 C 0.51 7.30 7.82 -10.98 -0.09 7.21 16 18 O -0.53 -10.41 16.03 5.56 0.09 -10.32 16 19 C -0.07 -0.70 6.25 -29.03 -0.18 -0.88 16 20 C -0.16 -1.86 4.85 -102.66 -0.50 -2.36 16 21 C 0.02 0.20 11.89 29.24 0.35 0.55 16 22 O -0.19 -2.44 10.58 3.92 0.04 -2.39 16 23 C 0.05 0.64 7.42 -38.47 -0.29 0.35 16 24 C -0.11 -1.11 10.07 -39.47 -0.40 -1.51 16 25 C -0.10 -0.87 10.01 -39.54 -0.40 -1.27 16 26 C -0.14 -1.31 9.98 -39.94 -0.40 -1.71 16 27 C -0.07 -0.76 10.05 -39.69 -0.40 -1.16 16 28 C -0.11 -1.45 6.38 -105.16 -0.67 -2.12 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.03 0.58 6.47 -51.93 -0.34 0.25 16 34 H 0.11 2.85 5.37 -51.93 -0.28 2.57 16 35 H 0.04 0.83 7.84 -51.93 -0.41 0.42 16 36 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 38 H 0.04 0.66 7.86 -51.93 -0.41 0.25 16 39 H 0.06 1.11 6.47 -51.93 -0.34 0.78 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.40 4.05 8.47 -40.82 -0.35 3.71 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.21 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 46 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 47 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 48 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 404.30 15.07 6.09 6.09 Total: -1.00 -35.24 404.30 -8.36 -43.59 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.15 Total: 1.99 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.91 Total: 1.20 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.13 Total: -49.13 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.22 Total: -21.16 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.04 Total: 17.42 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.24 -8.36 -43.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734578871.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.225 kcal (2) G-P(sol) polarization free energy of solvation -35.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds