Wall clock time and date at job start Sat Apr 11 2020 07:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 114.00098 * 2 1 4 4 C 1.52994 * 109.47020 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47114 * 64.99870 * 4 3 2 6 6 C 1.36933 * 120.00408 * 274.46376 * 5 4 3 7 7 H 1.07996 * 119.99975 * 146.16787 * 6 5 4 8 8 C 1.38809 * 119.99476 * 326.16886 * 6 5 4 9 9 N 1.31617 * 120.00537 * 335.31287 * 8 6 5 10 10 Si 1.86804 * 119.99768 * 155.31183 * 8 6 5 11 11 H 1.48503 * 109.47163 * 89.99834 * 10 8 6 12 12 H 1.48501 * 109.47092 * 210.00061 * 10 8 6 13 13 H 1.48503 * 109.47262 * 329.99778 * 10 8 6 14 14 C 1.46511 * 119.99904 * 94.46354 * 5 4 3 15 15 C 1.52998 * 109.46807 * 270.00046 * 14 5 4 16 16 N 1.46497 * 109.46780 * 179.97438 * 15 14 5 17 17 C 1.34778 * 120.00111 * 179.97438 * 16 15 14 18 18 O 1.21279 * 120.00198 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00221 * 179.97438 * 17 16 15 20 20 C 1.50701 * 109.47193 * 180.02562 * 19 17 16 21 21 C 1.33998 * 126.90432 * 265.02962 * 20 19 17 22 22 O 1.34453 * 110.14812 * 179.97438 * 21 20 19 23 23 C 1.34803 * 110.89518 * 0.02562 * 22 21 20 24 24 C 1.38943 * 133.50203 * 180.02562 * 23 22 21 25 25 C 1.37842 * 119.82132 * 179.97438 * 24 23 22 26 26 C 1.38742 * 120.68427 * 0.02562 * 25 24 23 27 27 C 1.36744 * 120.42037 * 359.97438 * 26 25 24 28 28 C 1.39407 * 119.71016 * 359.97438 * 27 26 25 29 29 H 1.08994 * 109.46945 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46859 * 300.00248 * 1 2 3 31 31 H 1.08996 * 109.46994 * 60.00063 * 1 2 3 32 32 H 1.08994 * 109.47121 * 59.99464 * 3 2 1 33 33 H 1.09003 * 109.46584 * 300.00065 * 3 2 1 34 34 H 1.08999 * 109.47304 * 305.00174 * 4 3 2 35 35 H 1.09007 * 109.47047 * 184.99525 * 4 3 2 36 36 H 0.97003 * 120.00790 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.46645 * 149.99923 * 14 5 4 38 38 H 1.08996 * 109.46821 * 29.99780 * 14 5 4 39 39 H 1.09002 * 109.47209 * 59.99909 * 15 14 5 40 40 H 1.08999 * 109.47364 * 299.99997 * 15 14 5 41 41 H 0.96999 * 120.00020 * 0.02562 * 16 15 14 42 42 H 1.09002 * 109.47071 * 60.00363 * 19 17 16 43 43 H 1.08999 * 109.47312 * 300.00568 * 19 17 16 44 44 H 1.07999 * 124.92678 * 359.95191 * 21 20 19 45 45 H 1.08005 * 120.08798 * 0.22721 * 24 23 22 46 46 H 1.07998 * 119.66040 * 180.02562 * 25 24 23 47 47 H 1.08005 * 119.79000 * 179.97438 * 26 25 24 48 48 H 1.07994 * 120.14083 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0103 -0.8004 -1.3639 7 1 3.7920 -1.2692 -2.3120 8 6 4.3250 -1.5806 -0.2599 9 7 5.0414 -1.0743 0.7213 10 14 3.7315 -3.3494 -0.1666 11 1 4.7465 -4.2450 -0.7776 12 1 3.5279 -3.7289 1.2546 13 1 2.4484 -3.4806 -0.9026 14 6 4.3820 1.4028 -2.3816 15 6 3.1636 1.7013 -3.2576 16 7 3.5688 2.5406 -4.3879 17 6 2.6553 2.9314 -5.2986 18 8 1.4978 2.5886 -5.1821 19 6 3.0719 3.7953 -6.4610 20 6 1.8719 4.0892 -7.3239 21 6 1.4859 3.4215 -8.4197 22 8 0.3683 3.9706 -8.9269 23 6 -0.0287 5.0244 -8.1859 24 6 -1.0940 5.9116 -8.2782 25 6 -1.2352 6.9131 -7.3417 26 6 -0.3230 7.0466 -6.3049 27 6 0.7324 6.1840 -6.1958 28 6 0.8910 5.1642 -7.1330 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8508 0.5685 0.8427 35 1 3.9785 2.1766 0.0901 36 1 5.2616 -1.6197 1.4927 37 1 5.1341 0.8789 -2.9714 38 1 4.7993 2.3381 -2.0088 39 1 2.4115 2.2251 -2.6677 40 1 2.7462 0.7659 -3.6304 41 1 4.4946 2.8145 -4.4812 42 1 3.8247 3.2724 -7.0509 43 1 3.4884 4.7308 -6.0875 44 1 1.9984 2.5666 -8.8355 45 1 -1.8118 5.8142 -9.0794 46 1 -2.0645 7.6010 -7.4158 47 1 -0.4473 7.8369 -5.5793 48 1 1.4395 6.2919 -5.3867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734578871.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:07 Heat of formation + Delta-G solvation = -48.524929 kcal Electronic energy + Delta-G solvation = -29930.933762 eV Core-core repulsion = 25759.575600 eV Total energy + Delta-G solvation = -4171.358162 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.41637 -40.60274 -38.93129 -38.76677 -37.41397 -35.64909 -34.89275 -33.33427 -31.64882 -31.21972 -30.72643 -29.57709 -28.20611 -27.17718 -25.66380 -24.26580 -23.45599 -23.23704 -22.18579 -21.92317 -20.74126 -18.73326 -18.30637 -18.12630 -17.96543 -17.41474 -16.96640 -16.87062 -16.69752 -16.59127 -16.35598 -16.28966 -15.66651 -15.40109 -15.15705 -14.99385 -14.71526 -14.60448 -14.48344 -13.92571 -13.64087 -13.53978 -13.43530 -13.22357 -13.06632 -12.97172 -12.69463 -12.53581 -12.43441 -12.40633 -12.29151 -11.93450 -11.81539 -11.71427 -11.54929 -11.20827 -10.76224 -10.44719 -10.36003 -9.99217 -9.59432 -9.10358 -8.58441 -7.76627 -5.31278 -0.01566 0.40241 1.29594 1.44759 1.49848 1.60221 1.70711 1.88391 2.32659 2.61600 2.79196 3.18899 3.36499 3.50958 3.59228 3.74544 3.91716 3.99708 4.13371 4.20586 4.23549 4.34400 4.40221 4.43612 4.46853 4.49096 4.56125 4.57470 4.63138 4.70121 4.71024 4.72135 4.78646 4.88786 4.94951 4.99620 5.12677 5.25516 5.27223 5.35922 5.47724 5.51922 5.54304 5.72373 5.72552 5.83092 6.19612 6.44535 6.64631 6.66960 7.22957 7.36408 7.92834 8.38853 9.20399 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.015936 B = 0.002282 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.606739 B =12266.205872 C =12737.048896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.053 3.947 4 C 0.135 3.865 5 N -0.587 5.587 6 C -0.242 4.242 7 H 0.044 0.956 8 C -0.018 4.018 9 N -0.912 5.912 10 Si 0.941 3.059 11 H -0.285 1.285 12 H -0.294 1.294 13 H -0.284 1.284 14 C 0.143 3.857 15 C 0.120 3.880 16 N -0.712 5.712 17 C 0.505 3.495 18 O -0.589 6.589 19 C -0.057 4.057 20 C -0.178 4.178 21 C 0.013 3.987 22 O -0.207 6.207 23 C 0.018 3.982 24 C -0.119 4.119 25 C -0.095 4.095 26 C -0.138 4.138 27 C -0.089 4.089 28 C -0.139 4.139 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.033 0.967 32 H 0.047 0.953 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.249 0.751 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.028 0.972 41 H 0.417 0.583 42 H 0.142 0.858 43 H 0.128 0.872 44 H 0.239 0.761 45 H 0.149 0.851 46 H 0.167 0.833 47 H 0.154 0.846 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.914 18.273 -15.915 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.026 4.026 4 C 0.008 3.992 5 N -0.307 5.307 6 C -0.372 4.372 7 H 0.061 0.939 8 C -0.215 4.215 9 N -0.557 5.557 10 Si 0.771 3.229 11 H -0.212 1.212 12 H -0.220 1.220 13 H -0.210 1.210 14 C 0.016 3.984 15 C -0.007 4.007 16 N -0.365 5.365 17 C 0.293 3.707 18 O -0.469 6.469 19 C -0.096 4.096 20 C -0.180 4.180 21 C -0.051 4.051 22 O -0.109 6.109 23 C -0.029 4.029 24 C -0.137 4.137 25 C -0.113 4.113 26 C -0.155 4.155 27 C -0.107 4.107 28 C -0.140 4.140 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.255 0.745 42 H 0.160 0.840 43 H 0.146 0.854 44 H 0.255 0.745 45 H 0.166 0.834 46 H 0.184 0.816 47 H 0.171 0.829 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.668 17.692 -15.892 24.699 hybrid contribution -0.273 -1.085 0.480 1.217 sum -6.941 16.608 -15.412 23.696 Atomic orbital electron populations 1.22789 0.82082 1.02439 0.99750 1.88156 1.19099 1.28716 1.95111 1.23331 0.97274 0.83956 0.98002 1.21116 0.89418 0.96731 0.91901 1.43747 1.74583 1.01968 1.10447 1.18832 1.39563 0.82524 0.96262 0.93865 1.25322 0.97675 1.00074 0.98452 1.70052 1.37630 1.37446 1.10614 0.85704 0.78378 0.82475 0.76321 1.21245 1.22035 1.20992 1.21052 0.93017 0.95086 0.89251 1.21849 0.99313 0.92522 0.87060 1.45888 1.12875 1.52255 1.25499 1.21308 0.85096 0.80335 0.83983 1.90712 1.21067 1.58118 1.77039 1.20040 0.95421 1.01452 0.92713 1.20752 1.00032 0.98225 0.98975 1.24398 0.86236 0.98856 0.95612 1.83968 1.39029 1.38636 1.49284 1.20096 0.98759 0.91073 0.92990 1.20336 0.96149 0.94586 1.02606 1.21349 0.99828 0.97096 0.93003 1.21173 0.94534 1.00219 0.99616 1.20548 0.99195 0.93551 0.97450 1.20121 0.97076 0.98747 0.98029 0.90097 0.93158 0.94834 0.93528 0.95076 0.90835 0.91877 0.94191 0.92638 0.91672 0.94125 0.95345 0.74549 0.84038 0.85399 0.74540 0.83361 0.81564 0.82852 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 11.01 113.37 1.25 2.17 16 2 O -0.39 -18.01 9.96 -148.98 -1.48 -19.49 16 3 C 0.05 2.18 6.28 71.98 0.45 2.63 16 4 C 0.13 6.11 5.83 86.38 0.50 6.61 16 5 N -0.59 -27.94 2.45 -701.99 -1.72 -29.66 16 6 C -0.24 -13.17 8.74 84.03 0.73 -12.43 16 7 H 0.04 2.43 7.94 -2.91 -0.02 2.41 16 8 C -0.02 -1.01 4.95 84.86 0.42 -0.59 16 9 N -0.91 -52.68 11.36 21.65 0.25 -52.44 16 10 Si 0.94 46.66 29.62 68.60 2.03 48.69 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 12 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 13 H -0.28 -14.21 7.11 99.48 0.71 -13.51 16 14 C 0.14 5.31 5.82 86.38 0.50 5.81 16 15 C 0.12 4.26 6.00 86.38 0.52 4.78 16 16 N -0.71 -18.34 5.56 -463.06 -2.57 -20.91 16 17 C 0.51 13.96 7.82 87.66 0.69 14.64 16 18 O -0.59 -23.11 16.03 -3.03 -0.05 -23.16 16 19 C -0.06 -0.99 6.25 29.10 0.18 -0.81 16 20 C -0.18 -4.09 4.85 -18.59 -0.09 -4.18 16 21 C 0.01 0.28 11.89 66.85 0.79 1.08 16 22 O -0.21 -5.26 10.58 -8.91 -0.09 -5.35 16 23 C 0.02 0.45 7.42 22.99 0.17 0.62 16 24 C -0.12 -2.34 10.07 22.34 0.23 -2.11 16 25 C -0.10 -1.51 10.01 22.30 0.22 -1.29 16 26 C -0.14 -2.40 9.98 22.04 0.22 -2.18 16 27 C -0.09 -1.97 10.05 22.20 0.22 -1.75 16 28 C -0.14 -3.56 6.38 -20.21 -0.13 -3.69 16 29 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.03 1.25 6.47 -2.39 -0.02 1.24 16 34 H 0.07 3.93 5.37 -2.39 -0.01 3.92 16 35 H 0.06 2.50 7.84 -2.38 -0.02 2.48 16 36 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 37 H 0.06 2.06 8.04 -2.39 -0.02 2.04 16 38 H 0.07 2.09 7.86 -2.39 -0.02 2.08 16 39 H 0.04 1.59 6.47 -2.39 -0.02 1.57 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.42 7.31 8.47 -92.71 -0.79 6.53 16 42 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.24 2.99 8.06 -2.91 -0.02 2.96 16 45 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 46 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 47 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 48 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -79.46 404.30 3.43 -76.03 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.19 Total: 16.97 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 6.88 Total: 9.31 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -4.05 Total: -103.01 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -1.63 Total: -48.00 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -79.46 3.43 -76.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734578871.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.510 kcal (2) G-P(sol) polarization free energy of solvation -79.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds