Wall clock time and date at job start Sat Apr 11 2020 07:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99787 * 2 1 4 4 H 1.48502 * 109.47507 * 270.00202 * 3 2 1 5 5 H 1.48506 * 109.47236 * 30.00352 * 3 2 1 6 6 H 1.48500 * 109.46897 * 150.00055 * 3 2 1 7 7 C 1.38807 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00060 * 359.97438 * 7 2 1 9 9 N 1.36943 * 120.00100 * 180.02562 * 7 2 1 10 10 C 1.46495 * 120.00141 * 180.27504 * 9 7 2 11 11 C 1.53000 * 109.47172 * 179.72354 * 10 9 7 12 12 H 1.08995 * 109.47268 * 59.99903 * 11 10 9 13 13 C 1.54804 * 109.47005 * 179.97438 * 11 10 9 14 14 N 1.45121 * 109.53993 * 187.87412 * 13 11 10 15 15 C 1.34780 * 118.75777 * 90.73738 * 14 13 11 16 16 O 1.21554 * 119.99762 * 354.16475 * 15 14 13 17 17 C 1.47827 * 120.00232 * 174.16452 * 15 14 13 18 18 C 1.39970 * 120.93689 * 306.40903 * 17 15 14 19 19 N 1.32138 * 118.91977 * 179.73776 * 18 17 15 20 20 C 1.31882 * 120.96789 * 0.52479 * 19 18 17 21 21 N 1.31849 * 122.09412 * 359.74580 * 20 19 18 22 22 C 1.32163 * 120.97171 * 359.97438 * 21 20 19 23 23 C 1.50697 * 120.53930 * 180.02562 * 22 21 20 24 24 C 1.52995 * 117.50320 * 13.63312 * 23 22 21 25 25 C 1.52994 * 117.50064 * 304.97280 * 23 22 21 26 26 C 1.47512 * 122.48854 * 270.72017 * 14 13 11 27 27 C 1.53571 * 111.02696 * 41.62822 * 26 14 13 28 28 C 1.51537 * 109.58292 * 39.97926 * 27 26 14 29 29 O 1.38020 * 109.46625 * 300.00672 * 11 10 9 30 30 H 0.97003 * 119.99822 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99557 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47063 * 299.72147 * 10 9 7 33 33 H 1.09001 * 109.47260 * 59.71738 * 10 9 7 34 34 H 1.08994 * 109.46258 * 307.89914 * 13 11 10 35 35 H 1.09000 * 109.45913 * 67.86965 * 13 11 10 36 36 H 1.07995 * 120.53996 * 359.97438 * 18 17 15 37 37 H 1.07995 * 118.95265 * 179.72227 * 20 19 18 38 38 H 1.09006 * 115.54913 * 159.30528 * 23 22 21 39 39 H 1.09007 * 117.49442 * 359.97438 * 24 23 22 40 40 H 1.08997 * 117.50388 * 145.01627 * 24 23 22 41 41 H 1.09009 * 117.50052 * 214.98380 * 25 23 22 42 42 H 1.09000 * 117.49732 * 0.02562 * 25 23 22 43 43 H 1.08997 * 109.17200 * 162.02737 * 26 14 13 44 44 H 1.09006 * 109.16441 * 281.23255 * 26 14 13 45 45 H 1.09002 * 109.45025 * 160.01545 * 27 26 14 46 46 H 1.09003 * 109.45410 * 279.94151 * 27 26 14 47 47 H 1.08997 * 109.58413 * 28.37945 * 28 27 26 48 48 H 1.09001 * 109.58902 * 148.81727 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 -0.0067 11 6 5.6164 -2.1911 -0.0115 12 1 5.8831 -1.6223 0.8792 13 6 6.3905 -3.5318 -0.0179 14 7 7.8071 -3.2752 0.1649 15 6 8.3070 -3.2595 1.4164 16 8 7.5596 -3.3520 2.3706 17 6 9.7642 -3.1299 1.6287 18 6 10.6629 -4.0021 1.0036 19 7 11.9576 -3.8468 1.2174 20 6 12.4046 -2.8950 2.0133 21 7 11.5931 -2.0556 2.6260 22 6 10.2838 -2.1353 2.4647 23 6 9.3653 -1.1705 3.1693 24 6 9.9960 0.0720 3.8012 25 6 9.4853 -1.0640 4.6908 26 6 8.7207 -3.0314 -0.9673 27 6 8.0679 -2.1182 -2.0153 28 6 7.2849 -1.0238 -1.3183 29 8 5.9455 -1.4638 -1.1374 30 1 -0.4850 0.8401 -0.0004 31 1 3.8647 -0.3620 0.0004 32 1 3.8523 -3.0450 0.8826 33 1 3.8455 -3.0397 -0.8973 34 1 6.0284 -4.1640 0.7927 35 1 6.2332 -4.0373 -0.9707 36 1 10.3042 -4.7869 0.3541 37 1 13.4691 -2.8003 2.1684 38 1 8.3715 -1.0645 2.7342 39 1 11.0755 0.1913 3.7076 40 1 9.4172 0.9953 3.7821 41 1 8.5705 -0.8876 5.2568 42 1 10.2289 -1.6916 5.1822 43 1 9.6305 -2.5585 -0.5976 44 1 8.9767 -3.9836 -1.4321 45 1 8.8416 -1.6702 -2.6388 46 1 7.3942 -2.7054 -2.6393 47 1 7.7348 -0.8142 -0.3479 48 1 7.2937 -0.1218 -1.9302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201966089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:14 Heat of formation + Delta-G solvation = 28.963779 kcal Electronic energy + Delta-G solvation = -31523.284958 eV Core-core repulsion = 27387.579710 eV Total energy + Delta-G solvation = -4135.705249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.92973 -40.44926 -38.62002 -37.60444 -35.91017 -34.81241 -33.85040 -33.09153 -32.63227 -31.18113 -29.25508 -27.09769 -26.10670 -25.85002 -24.73597 -22.66806 -22.49255 -21.87309 -21.62353 -21.08830 -19.88762 -18.44511 -17.95340 -17.66419 -17.34689 -16.69528 -16.61855 -15.93742 -15.75482 -15.33395 -15.02245 -14.76777 -14.51682 -14.36870 -14.17980 -13.88159 -13.80823 -13.54723 -13.00954 -12.67895 -12.57414 -12.41384 -12.24212 -12.04540 -11.96964 -11.95400 -11.69908 -11.58540 -11.25626 -10.99740 -10.83501 -10.80981 -10.71059 -10.42571 -10.14967 -10.05034 -9.79463 -9.72821 -9.60589 -9.54518 -8.86103 -8.79954 -7.16915 -5.71615 -3.06089 0.09294 0.48631 2.21817 2.56370 3.10015 3.42827 3.43447 3.47121 3.49449 3.58832 3.61163 3.75688 3.83937 3.93912 4.39001 4.39899 4.51135 4.61312 4.65068 4.65357 4.70561 4.74885 4.84437 4.99159 5.11579 5.15850 5.26743 5.28089 5.31426 5.39882 5.41629 5.54540 5.58160 5.64100 5.72037 5.75872 5.80408 5.80899 5.89836 5.91074 5.95950 6.25580 6.38582 6.53858 6.65013 6.90145 7.51692 7.74629 7.79237 8.04388 8.47462 9.27196 9.99679 10.20366 11.46876 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.003183 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.481338 B = 8795.288905 C = 9691.803681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.171 3.829 11 C 0.084 3.916 12 H 0.052 0.948 13 C 0.082 3.918 14 N -0.602 5.602 15 C 0.562 3.438 16 O -0.508 6.508 17 C -0.229 4.229 18 C 0.184 3.816 19 N -0.525 5.525 20 C 0.313 3.687 21 N -0.519 5.519 22 C 0.259 3.741 23 C -0.132 4.132 24 C -0.153 4.153 25 C -0.142 4.142 26 C 0.104 3.896 27 C -0.166 4.166 28 C 0.072 3.928 29 O -0.370 6.370 30 H 0.259 0.741 31 H 0.364 0.636 32 H 0.044 0.956 33 H 0.036 0.964 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.173 0.827 37 H 0.202 0.798 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.045 0.955 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.901 -6.331 0.993 29.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.395 5.395 10 C 0.043 3.957 11 C 0.024 3.976 12 H 0.070 0.930 13 C -0.041 4.041 14 N -0.335 5.335 15 C 0.347 3.653 16 O -0.383 6.383 17 C -0.237 4.237 18 C 0.018 3.982 19 N -0.238 5.238 20 C 0.026 3.974 21 N -0.233 5.233 22 C 0.113 3.887 23 C -0.151 4.151 24 C -0.191 4.191 25 C -0.180 4.180 26 C -0.018 4.018 27 C -0.204 4.204 28 C -0.005 4.005 29 O -0.288 6.288 30 H 0.069 0.931 31 H 0.197 0.803 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.190 0.810 37 H 0.218 0.782 38 H 0.145 0.855 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.063 0.937 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 29.118 -6.360 1.496 29.842 hybrid contribution 0.071 0.892 -0.137 0.905 sum 29.189 -5.467 1.360 29.728 Atomic orbital electron populations 1.69708 1.05075 1.25757 1.57853 1.24643 0.95217 0.97189 1.02127 0.86508 0.79101 0.84926 0.77774 1.21045 1.21852 1.20484 1.19057 0.80534 0.94770 1.42704 0.89178 1.42545 1.03897 1.02072 1.90987 1.20594 0.85477 0.90200 0.99416 1.22341 0.96476 0.90532 0.88237 0.93004 1.22482 0.78402 0.99264 1.03939 1.47880 1.09516 1.70426 1.05654 1.17967 0.86617 0.77291 0.83431 1.90870 1.59197 1.47879 1.40345 1.21519 0.96327 1.01775 1.04059 1.23456 0.87856 0.94724 0.92195 1.68470 1.15757 1.21837 1.17753 1.25183 1.00906 0.84788 0.86496 1.68214 1.03688 1.27185 1.24187 1.20858 0.90013 0.90138 0.87718 1.21056 0.98675 0.98621 0.96744 1.23047 1.01943 0.91965 1.02120 1.22946 1.03530 1.01598 0.89879 1.22079 0.92247 1.00075 0.87417 1.22493 1.01058 0.98534 0.98294 1.22133 0.82951 0.96073 0.99306 1.86433 1.27046 1.71765 1.43548 0.93123 0.80274 0.93867 0.94653 0.88453 0.89195 0.80962 0.78154 0.85542 0.87306 0.87996 0.87585 0.88418 0.90629 0.90926 0.89544 0.89451 0.93651 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.98 13.97 55.49 0.78 -29.20 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 22.91 27.74 -169.99 -4.71 18.20 16 4 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.28 -6.87 6.52 56.52 0.37 -6.50 16 7 C -0.24 -7.02 10.47 -15.06 -0.16 -7.17 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 9 N -0.75 -18.63 5.29 -59.91 -0.32 -18.95 16 10 C 0.17 3.39 5.95 -4.04 -0.02 3.36 16 11 C 0.08 1.36 2.73 -25.78 -0.07 1.29 16 12 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 13 C 0.08 1.03 4.82 -3.83 -0.02 1.01 16 14 N -0.60 -6.47 2.19 -173.59 -0.38 -6.85 16 15 C 0.56 6.90 6.29 -12.34 -0.08 6.82 16 16 O -0.51 -8.06 15.47 5.32 0.08 -7.98 16 17 C -0.23 -2.40 4.44 -104.69 -0.46 -2.86 16 18 C 0.18 1.56 9.25 -16.77 -0.16 1.41 16 19 N -0.52 -4.54 10.42 -14.24 -0.15 -4.69 16 20 C 0.31 2.50 12.27 -92.03 -1.13 1.37 16 21 N -0.52 -5.05 9.54 -10.48 -0.10 -5.15 16 22 C 0.26 2.81 6.50 -81.82 -0.53 2.27 16 23 C -0.13 -1.45 5.27 -91.78 -0.48 -1.94 16 24 C -0.15 -1.39 10.04 -26.70 -0.27 -1.65 16 25 C -0.14 -1.37 10.24 -26.70 -0.27 -1.65 16 26 C 0.10 0.81 5.00 -3.19 -0.02 0.80 16 27 C -0.17 -1.39 5.78 -27.18 -0.16 -1.55 16 28 C 0.07 0.85 6.37 36.42 0.23 1.08 16 29 O -0.37 -5.93 9.18 -26.55 -0.24 -6.17 16 30 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 31 H 0.36 9.04 5.39 -40.82 -0.22 8.82 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.28 7.36 -51.93 -0.38 0.90 16 35 H 0.09 0.99 8.11 -51.93 -0.42 0.57 16 36 H 0.17 1.04 7.69 -52.49 -0.40 0.64 16 37 H 0.20 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.13 1.61 6.93 -51.93 -0.36 1.25 16 39 H 0.11 0.95 7.66 -51.92 -0.40 0.55 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.11 0.98 8.14 -51.92 -0.42 0.56 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.08 0.56 5.80 -51.93 -0.30 0.26 16 44 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.80 8.01 -51.93 -0.42 0.38 16 47 H 0.05 0.55 7.40 -51.93 -0.38 0.16 16 48 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -35.64 387.48 -10.00 -45.64 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.10 Total: 6.70 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -3.69 Total: 2.61 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: -0.17 Total: -64.84 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.16 Total: -14.15 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.71 Total: 18.20 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.64 -10.00 -45.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201966089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.605 kcal (2) G-P(sol) polarization free energy of solvation -35.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds