Wall clock time and date at job start Sat Apr 11 2020 07:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86794 * 120.00066 * 2 1 4 4 H 1.48503 * 109.47018 * 269.99749 * 3 2 1 5 5 H 1.48497 * 109.47325 * 29.99857 * 3 2 1 6 6 H 1.48502 * 109.47271 * 150.00009 * 3 2 1 7 7 C 1.38942 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00345 * 0.02562 * 7 2 1 9 9 N 1.37102 * 120.00516 * 180.02562 * 7 2 1 10 10 C 1.34769 * 120.00943 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99169 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00524 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47568 * 179.97438 * 12 10 9 14 14 C 1.46894 * 111.00402 * 179.97438 * 13 12 10 15 15 H 1.08998 * 112.88699 * 23.65265 * 14 13 12 16 16 C 1.54251 * 113.66806 * 252.18258 * 14 13 12 17 17 C 1.53950 * 87.19069 * 220.79726 * 16 14 13 18 18 H 1.08994 * 113.66344 * 139.24637 * 17 16 14 19 19 N 1.46506 * 113.66259 * 270.21289 * 17 16 14 20 20 C 1.34777 * 119.99873 * 253.98908 * 19 17 16 21 21 O 1.21695 * 119.99811 * 359.97438 * 20 19 17 22 22 C 1.46676 * 119.99963 * 179.97438 * 20 19 17 23 23 C 1.37874 * 126.23351 * 180.02562 * 22 20 19 24 24 C 1.39834 * 107.08700 * 179.97438 * 23 22 20 25 25 C 1.35453 * 107.86210 * 359.97438 * 24 23 22 26 26 N 1.35535 * 108.87219 * 359.76481 * 25 24 23 27 27 H 0.97000 * 125.67275 * 180.25825 * 26 25 24 28 28 C 1.52906 * 86.88314 * 24.72856 * 17 16 14 29 29 C 1.52917 * 121.13739 * 209.33719 * 28 17 16 30 30 C 1.53947 * 86.78384 * 209.38433 * 29 28 17 31 31 C 1.52912 * 121.13888 * 100.77948 * 28 17 16 32 32 H 0.97002 * 119.99890 * 359.97438 * 1 2 3 33 33 H 0.97007 * 119.99380 * 0.02562 * 9 7 2 34 34 H 1.09004 * 109.47451 * 59.99370 * 12 10 9 35 35 H 1.09004 * 109.46973 * 299.99571 * 12 10 9 36 36 H 1.00899 * 110.99994 * 56.04014 * 13 12 10 37 37 H 1.09001 * 113.66865 * 106.22671 * 16 14 13 38 38 H 1.08999 * 113.57608 * 335.34964 * 16 14 13 39 39 H 0.96995 * 120.00050 * 73.71022 * 19 17 16 40 40 H 1.08001 * 126.45480 * 359.97438 * 23 22 20 41 41 H 1.07999 * 126.06906 * 180.02562 * 24 23 22 42 42 H 1.08004 * 125.56088 * 180.02562 * 25 24 23 43 43 H 1.08999 * 113.65689 * 323.85791 * 29 28 17 44 44 H 1.09001 * 113.66192 * 94.90616 * 29 28 17 45 45 H 1.09001 * 113.57951 * 270.13310 * 30 29 28 46 46 H 1.08994 * 113.58355 * 139.33528 * 30 29 28 47 47 H 1.09006 * 113.65874 * 265.09242 * 31 28 17 48 48 H 1.09001 * 113.65888 * 36.14119 * 31 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2035 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4471 -3.4209 0.0011 12 6 5.5606 -2.3706 0.0022 13 7 6.0503 -3.7556 0.0026 14 6 7.5188 -3.7948 0.0031 15 1 7.9669 -2.8866 0.4060 16 6 8.1267 -4.2437 -1.3416 17 6 9.1407 -5.0633 -0.5230 18 1 9.3479 -6.0477 -0.9426 19 7 10.3573 -4.3218 -0.1818 20 6 11.5128 -4.5922 -0.8207 21 8 11.5456 -5.4526 -1.6807 22 6 12.7307 -3.8495 -0.4794 23 6 13.9751 -4.0192 -1.0483 24 6 14.8377 -3.1097 -0.4286 25 6 14.1209 -2.4152 0.4873 26 7 12.8379 -2.8514 0.4624 27 1 12.1160 -2.5173 1.0175 28 6 8.0982 -5.0800 0.5954 29 6 8.5157 -5.1554 2.0645 30 6 7.1818 -5.8814 2.3165 31 6 7.2175 -6.3064 0.8373 32 1 -0.4850 0.8401 0.0004 33 1 3.8648 -0.3634 0.0014 34 1 5.9234 -1.8571 0.8927 35 1 5.9247 -1.8565 -0.8873 36 1 5.6754 -4.2719 -0.7790 37 1 8.5799 -3.4314 -1.9098 38 1 7.4537 -4.8564 -1.9414 39 1 10.3303 -3.6335 0.5011 40 1 14.2346 -4.7222 -1.8260 41 1 15.8886 -2.9828 -0.6428 42 1 14.5078 -1.6377 1.1294 43 1 9.3928 -5.7788 2.2385 44 1 8.5828 -4.1821 2.5508 45 1 6.3582 -5.2092 2.5572 46 1 7.2644 -6.7164 3.0121 47 1 6.2474 -6.2526 0.3430 48 1 7.7296 -7.2533 0.6663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202420332.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:17 Heat of formation + Delta-G solvation = 29.582958 kcal Electronic energy + Delta-G solvation = -29883.954341 eV Core-core repulsion = 25748.275942 eV Total energy + Delta-G solvation = -4135.678399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.74034 -41.05993 -38.94397 -38.37200 -35.69548 -34.77233 -33.91187 -32.39566 -31.67738 -31.33143 -29.57763 -27.14753 -25.90774 -24.85349 -24.53507 -23.49168 -22.54408 -21.26271 -20.63428 -20.44018 -19.53952 -19.45712 -18.60870 -17.92520 -16.55884 -16.25319 -16.02598 -15.59122 -15.55573 -15.36175 -14.82155 -14.71705 -14.58905 -14.23724 -14.11690 -13.95667 -13.46204 -13.11484 -13.07174 -13.01518 -12.75763 -12.70236 -12.44294 -12.33329 -12.29864 -12.08297 -11.75030 -11.57839 -11.21279 -11.11527 -10.64043 -10.57600 -10.39441 -10.28424 -10.11124 -10.00530 -9.60920 -9.43560 -9.31171 -8.64909 -8.61348 -8.22771 -8.13670 -6.34402 -3.85951 1.08454 2.35337 2.62187 2.72849 2.98311 3.02855 3.05968 3.11502 3.69914 3.98140 4.06784 4.14988 4.35995 4.42158 4.57054 4.59297 4.62950 4.68143 4.86750 4.91278 4.94506 5.03840 5.18611 5.22194 5.36028 5.39798 5.53463 5.59364 5.62578 5.63964 5.67383 5.70143 5.72696 5.77022 5.79791 5.88495 5.96258 6.13415 6.21988 6.28796 6.34201 6.49241 6.49824 6.89201 7.07463 7.14979 7.50755 7.54899 7.83569 8.11077 8.55989 8.91567 9.38827 9.78739 10.78710 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.013475 B = 0.002243 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.413963 B =12478.603502 C =13732.699926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.449 3.551 11 O -0.564 6.564 12 C 0.048 3.952 13 N -0.650 5.650 14 C 0.093 3.907 15 H 0.093 0.907 16 C -0.178 4.178 17 C 0.135 3.865 18 H 0.106 0.894 19 N -0.709 5.709 20 C 0.591 3.409 21 O -0.527 6.527 22 C -0.058 4.058 23 C -0.106 4.106 24 C -0.213 4.213 25 C 0.023 3.977 26 N -0.541 5.541 27 H 0.416 0.584 28 C -0.099 4.099 29 C -0.126 4.126 30 C -0.129 4.129 31 C -0.104 4.104 32 H 0.273 0.727 33 H 0.370 0.630 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.355 0.645 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.394 0.606 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.171 0.829 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.092 0.908 46 H 0.060 0.940 47 H 0.084 0.916 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.933 -3.846 3.109 29.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.445 6.445 12 C -0.085 4.085 13 N -0.282 5.282 14 C -0.018 4.018 15 H 0.111 0.889 16 C -0.219 4.219 17 C 0.029 3.971 18 H 0.124 0.876 19 N -0.358 5.358 20 C 0.379 3.621 21 O -0.403 6.403 22 C -0.170 4.170 23 C -0.132 4.132 24 C -0.237 4.237 25 C -0.113 4.113 26 N -0.137 5.137 27 H 0.253 0.747 28 C -0.100 4.100 29 C -0.164 4.164 30 C -0.166 4.166 31 C -0.142 4.142 32 H 0.084 0.916 33 H 0.202 0.798 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.176 0.824 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.227 0.773 40 H 0.165 0.835 41 H 0.162 0.838 42 H 0.189 0.811 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.078 0.922 47 H 0.103 0.897 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 28.075 -5.114 3.228 28.719 hybrid contribution 0.491 2.432 -0.257 2.494 sum 28.566 -2.681 2.971 28.845 Atomic orbital electron populations 1.69621 1.05630 1.27503 1.49300 1.25044 0.95505 0.97981 0.97683 0.86668 0.79742 0.84086 0.78841 1.19669 1.20157 1.19563 1.19427 0.79231 0.96623 1.48072 0.86272 1.42215 1.07549 1.06158 1.67087 1.19704 0.88184 0.84574 0.84051 1.90571 1.69404 1.30902 1.53667 1.21746 0.95097 0.90615 1.01053 1.59933 1.04798 1.12303 1.51122 1.22820 0.88404 0.96253 0.94371 0.88854 1.24223 0.99117 1.00780 0.97744 1.21672 0.82598 0.96214 0.96613 0.87626 1.45474 1.08670 1.40458 1.41220 1.17068 0.81514 0.82264 0.81295 1.90855 1.84967 1.32566 1.31883 1.20452 0.96548 0.99266 1.00769 1.21364 0.90621 1.00483 1.00779 1.20937 1.00331 1.01143 1.01277 1.22078 0.83515 1.02550 1.03133 1.42045 1.10533 1.29677 1.31418 0.74719 1.23075 0.95599 0.97730 0.93630 1.22673 0.98115 1.00720 0.94881 1.22723 0.97617 1.00059 0.96207 1.22436 0.99902 0.94750 0.97089 0.91596 0.79756 0.89687 0.93778 0.82412 0.91102 0.88573 0.77294 0.83455 0.83832 0.81130 0.90446 0.91811 0.88978 0.92158 0.89748 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.53 13.96 55.50 0.77 -24.75 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 3 Si 0.88 19.08 27.74 -169.99 -4.71 14.36 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 7 C -0.30 -8.51 10.16 -14.93 -0.15 -8.66 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 N -0.59 -13.73 5.09 -10.97 -0.06 -13.79 16 10 C 0.45 9.82 7.82 -10.99 -0.09 9.73 16 11 O -0.56 -14.67 15.78 5.54 0.09 -14.58 16 12 C 0.05 0.73 6.01 -4.98 -0.03 0.70 16 13 N -0.65 -9.01 5.35 -107.35 -0.57 -9.59 16 14 C 0.09 0.96 3.99 -67.11 -0.27 0.69 16 15 H 0.09 0.86 7.87 -51.93 -0.41 0.45 16 16 C -0.18 -1.78 7.52 -25.59 -0.19 -1.97 16 17 C 0.13 1.29 4.09 -67.48 -0.28 1.02 16 18 H 0.11 1.19 7.50 -51.93 -0.39 0.80 16 19 N -0.71 -5.90 5.05 -54.68 -0.28 -6.18 16 20 C 0.59 6.37 7.79 -12.85 -0.10 6.27 16 21 O -0.53 -7.69 16.50 5.19 0.09 -7.60 16 22 C -0.06 -0.52 7.06 -81.98 -0.58 -1.10 16 23 C -0.11 -0.97 10.65 -39.12 -0.42 -1.39 16 24 C -0.21 -1.47 10.81 -39.98 -0.43 -1.90 16 25 C 0.02 0.12 11.89 -16.91 -0.20 -0.08 16 26 N -0.54 -3.07 5.99 -9.39 -0.06 -3.13 16 27 H 0.42 1.20 8.19 -40.82 -0.33 0.86 16 28 C -0.10 -0.93 0.92 -154.70 -0.14 -1.07 16 29 C -0.13 -1.10 7.46 -26.28 -0.20 -1.30 16 30 C -0.13 -1.34 8.08 -25.75 -0.21 -1.55 16 31 C -0.10 -1.09 7.53 -26.28 -0.20 -1.29 16 32 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 34 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.35 5.27 7.80 -39.29 -0.31 4.97 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.99 7.82 -51.93 -0.41 0.59 16 39 H 0.39 2.30 7.71 -40.82 -0.31 1.98 16 40 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 41 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.17 0.34 8.06 -52.48 -0.42 -0.08 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.08 1.03 7.49 -51.93 -0.39 0.64 16 48 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 398.62 15.07 6.01 6.01 Total: -1.00 -34.93 398.62 -9.29 -44.22 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -6.99 Total: 15.93 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -3.57 Total: -0.89 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.19 Total: -57.44 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.17 Total: -22.19 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.93 -9.29 -44.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202420332.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.799 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds