Wall clock time and date at job start Sat Apr 11 2020 07:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86794 * 120.00066 * 2 1 4 4 H 1.48503 * 109.47018 * 269.99749 * 3 2 1 5 5 H 1.48497 * 109.47325 * 29.99857 * 3 2 1 6 6 H 1.48502 * 109.47271 * 150.00009 * 3 2 1 7 7 C 1.38942 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00345 * 0.02562 * 7 2 1 9 9 N 1.37102 * 120.00516 * 180.02562 * 7 2 1 10 10 C 1.34769 * 120.00943 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99169 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00524 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47568 * 179.97438 * 12 10 9 14 14 C 1.46894 * 111.00402 * 179.97438 * 13 12 10 15 15 H 1.08998 * 112.88699 * 23.65265 * 14 13 12 16 16 C 1.54251 * 113.66806 * 252.18258 * 14 13 12 17 17 C 1.53950 * 87.19069 * 220.79726 * 16 14 13 18 18 H 1.08994 * 113.66344 * 139.24637 * 17 16 14 19 19 N 1.46506 * 113.66259 * 270.21289 * 17 16 14 20 20 C 1.34777 * 119.99873 * 253.98908 * 19 17 16 21 21 O 1.21695 * 119.99811 * 359.97438 * 20 19 17 22 22 C 1.46676 * 119.99963 * 179.97438 * 20 19 17 23 23 C 1.37874 * 126.23351 * 180.02562 * 22 20 19 24 24 C 1.39834 * 107.08700 * 179.97438 * 23 22 20 25 25 C 1.35453 * 107.86210 * 359.97438 * 24 23 22 26 26 N 1.35535 * 108.87219 * 359.76481 * 25 24 23 27 27 H 0.97000 * 125.67275 * 180.25825 * 26 25 24 28 28 C 1.52906 * 86.88314 * 24.72856 * 17 16 14 29 29 C 1.52917 * 121.13739 * 209.33719 * 28 17 16 30 30 C 1.53947 * 86.78384 * 209.38433 * 29 28 17 31 31 C 1.52912 * 121.13888 * 100.77948 * 28 17 16 32 32 H 0.97002 * 119.99890 * 359.97438 * 1 2 3 33 33 H 0.97007 * 119.99380 * 0.02562 * 9 7 2 34 34 H 1.09004 * 109.47451 * 59.99370 * 12 10 9 35 35 H 1.09004 * 109.46973 * 299.99571 * 12 10 9 36 36 H 1.00899 * 110.99994 * 56.04014 * 13 12 10 37 37 H 1.09001 * 113.66865 * 106.22671 * 16 14 13 38 38 H 1.08999 * 113.57608 * 335.34964 * 16 14 13 39 39 H 0.96995 * 120.00050 * 73.71022 * 19 17 16 40 40 H 1.08001 * 126.45480 * 359.97438 * 23 22 20 41 41 H 1.07999 * 126.06906 * 180.02562 * 24 23 22 42 42 H 1.08004 * 125.56088 * 180.02562 * 25 24 23 43 43 H 1.08999 * 113.65689 * 323.85791 * 29 28 17 44 44 H 1.09001 * 113.66192 * 94.90616 * 29 28 17 45 45 H 1.09001 * 113.57951 * 270.13310 * 30 29 28 46 46 H 1.08994 * 113.58355 * 139.33528 * 30 29 28 47 47 H 1.09006 * 113.65874 * 265.09242 * 31 28 17 48 48 H 1.09001 * 113.65888 * 36.14119 * 31 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2035 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4471 -3.4209 0.0011 12 6 5.5606 -2.3706 0.0022 13 7 6.0503 -3.7556 0.0026 14 6 7.5188 -3.7948 0.0031 15 1 7.9669 -2.8866 0.4060 16 6 8.1267 -4.2437 -1.3416 17 6 9.1407 -5.0633 -0.5230 18 1 9.3479 -6.0477 -0.9426 19 7 10.3573 -4.3218 -0.1818 20 6 11.5128 -4.5922 -0.8207 21 8 11.5456 -5.4526 -1.6807 22 6 12.7307 -3.8495 -0.4794 23 6 13.9751 -4.0192 -1.0483 24 6 14.8377 -3.1097 -0.4286 25 6 14.1209 -2.4152 0.4873 26 7 12.8379 -2.8514 0.4624 27 1 12.1160 -2.5173 1.0175 28 6 8.0982 -5.0800 0.5954 29 6 8.5157 -5.1554 2.0645 30 6 7.1818 -5.8814 2.3165 31 6 7.2175 -6.3064 0.8373 32 1 -0.4850 0.8401 0.0004 33 1 3.8648 -0.3634 0.0014 34 1 5.9234 -1.8571 0.8927 35 1 5.9247 -1.8565 -0.8873 36 1 5.6754 -4.2719 -0.7790 37 1 8.5799 -3.4314 -1.9098 38 1 7.4537 -4.8564 -1.9414 39 1 10.3303 -3.6335 0.5011 40 1 14.2346 -4.7222 -1.8260 41 1 15.8886 -2.9828 -0.6428 42 1 14.5078 -1.6377 1.1294 43 1 9.3928 -5.7788 2.2385 44 1 8.5828 -4.1821 2.5508 45 1 6.3582 -5.2092 2.5572 46 1 7.2644 -6.7164 3.0121 47 1 6.2474 -6.2526 0.3430 48 1 7.7296 -7.2533 0.6663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202420332.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:16 Heat of formation + Delta-G solvation = 2.248901 kcal Electronic energy + Delta-G solvation = -29885.139634 eV Core-core repulsion = 25748.275942 eV Total energy + Delta-G solvation = -4136.863693 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.37967 -41.78214 -40.21988 -39.69257 -36.63261 -36.10134 -35.51497 -33.76395 -33.26540 -31.88864 -30.18509 -28.57882 -26.70182 -26.14054 -25.56957 -24.52566 -23.39390 -21.91262 -21.31127 -21.27216 -21.05513 -20.36640 -20.15557 -18.97562 -17.73490 -17.14334 -17.04213 -16.86858 -16.46813 -16.35840 -16.24627 -15.76895 -15.67173 -15.25964 -14.95506 -14.74031 -14.61234 -14.47579 -14.26622 -14.09407 -13.91830 -13.57435 -13.39294 -13.24643 -13.17302 -13.09059 -13.04320 -12.80220 -12.46247 -12.41483 -11.99021 -11.94922 -11.51261 -11.42526 -11.25104 -11.13857 -10.91882 -10.39670 -10.24730 -10.11396 -9.94126 -9.23939 -9.16177 -8.41237 -6.02182 0.45051 1.29280 1.35436 1.44348 1.85009 1.94062 1.97015 2.22930 2.25103 2.34237 2.72360 3.15338 3.32503 3.35849 3.56929 3.68596 3.86386 3.88371 3.93767 4.06375 4.15972 4.35406 4.39810 4.42958 4.46783 4.49939 4.54966 4.58002 4.61741 4.78234 4.86781 4.88623 4.93078 4.98698 5.12928 5.15224 5.25510 5.28168 5.44610 5.50631 5.53887 5.64095 5.75481 5.92609 5.93602 6.11402 6.35809 6.43101 6.60013 6.62136 6.88708 7.10036 7.40396 7.97555 8.76494 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.013475 B = 0.002243 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.413963 B =12478.603502 C =13732.699926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.018 4.018 3 Si 0.966 3.034 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.228 1.228 7 C -0.327 4.327 8 H 0.054 0.946 9 N -0.592 5.592 10 C 0.448 3.552 11 O -0.614 6.614 12 C 0.062 3.938 13 N -0.665 5.665 14 C 0.097 3.903 15 H 0.120 0.880 16 C -0.175 4.175 17 C 0.141 3.859 18 H 0.086 0.914 19 N -0.692 5.692 20 C 0.590 3.410 21 O -0.577 6.577 22 C -0.081 4.081 23 C -0.128 4.128 24 C -0.231 4.231 25 C 0.047 3.953 26 N -0.526 5.526 27 H 0.431 0.569 28 C -0.090 4.090 29 C -0.111 4.111 30 C -0.132 4.132 31 C -0.110 4.110 32 H 0.279 0.721 33 H 0.390 0.610 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.345 0.655 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.410 0.590 40 H 0.133 0.867 41 H 0.159 0.841 42 H 0.213 0.787 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.953 -0.451 4.689 33.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.216 4.216 3 Si 0.786 3.214 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.152 1.152 7 C -0.457 4.457 8 H 0.072 0.928 9 N -0.234 5.234 10 C 0.236 3.764 11 O -0.498 6.498 12 C -0.070 4.070 13 N -0.295 5.295 14 C -0.013 4.013 15 H 0.138 0.862 16 C -0.215 4.215 17 C 0.034 3.966 18 H 0.104 0.896 19 N -0.341 5.341 20 C 0.380 3.620 21 O -0.456 6.456 22 C -0.194 4.194 23 C -0.156 4.156 24 C -0.255 4.255 25 C -0.090 4.090 26 N -0.123 5.123 27 H 0.271 0.729 28 C -0.092 4.092 29 C -0.149 4.149 30 C -0.170 4.170 31 C -0.148 4.148 32 H 0.088 0.912 33 H 0.225 0.775 34 H 0.134 0.866 35 H 0.093 0.907 36 H 0.165 0.835 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.246 0.754 40 H 0.151 0.849 41 H 0.176 0.824 42 H 0.230 0.770 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 32.109 -1.700 4.852 32.518 hybrid contribution -0.780 1.217 -0.745 1.626 sum 31.329 -0.483 4.108 31.601 Atomic orbital electron populations 1.69813 1.08195 1.29215 1.50416 1.26150 0.96499 1.02832 0.96164 0.85345 0.79561 0.76620 0.79853 1.18301 1.20149 1.15163 1.18990 0.81610 0.94829 1.50232 0.92818 1.42037 1.05738 1.07678 1.67911 1.21051 0.91136 0.83238 0.80979 1.90556 1.71444 1.32812 1.54995 1.21685 0.89313 0.92085 1.03888 1.59940 1.07015 1.11503 1.51067 1.22955 0.86148 0.97568 0.94616 0.86196 1.24170 0.98933 1.00748 0.97693 1.21487 0.82938 0.95603 0.96542 0.89562 1.45258 1.07540 1.40295 1.41041 1.17332 0.82384 0.81699 0.80631 1.90828 1.85760 1.34860 1.34197 1.20135 0.95635 1.00965 1.02696 1.21527 0.91746 1.01183 1.01142 1.21215 1.01174 1.01181 1.01905 1.22731 0.82707 1.01732 1.01855 1.42013 1.11390 1.28440 1.30490 0.72886 1.22958 0.95029 0.96864 0.94337 1.22621 0.97177 1.01449 0.93628 1.22665 0.98094 1.00195 0.96028 1.22456 0.99155 0.95906 0.97288 0.91200 0.77485 0.86565 0.90665 0.83480 0.90731 0.89503 0.75390 0.84912 0.82381 0.77049 0.89445 0.90115 0.91289 0.91484 0.92117 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.21 13.96 21.66 0.30 -55.91 16 2 C -0.02 -0.99 5.50 84.92 0.47 -0.53 16 3 Si 0.97 37.97 27.74 68.60 1.90 39.87 16 4 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 5 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.23 -7.38 6.52 99.48 0.65 -6.73 16 7 C -0.33 -18.97 10.16 84.04 0.85 -18.11 16 8 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 9 N -0.59 -27.10 5.09 -307.00 -1.56 -28.66 16 10 C 0.45 19.41 7.82 87.66 0.69 20.10 16 11 O -0.61 -33.23 15.78 -3.08 -0.05 -33.28 16 12 C 0.06 1.72 6.01 85.55 0.51 2.23 16 13 N -0.66 -17.37 5.35 -493.56 -2.64 -20.02 16 14 C 0.10 1.73 3.99 45.31 0.18 1.91 16 15 H 0.12 1.56 7.87 -2.39 -0.02 1.54 16 16 C -0.17 -3.22 7.52 31.34 0.24 -2.98 16 17 C 0.14 2.51 4.09 45.28 0.19 2.70 16 18 H 0.09 1.95 7.50 -2.39 -0.02 1.93 16 19 N -0.69 -9.97 5.05 -445.12 -2.25 -12.22 16 20 C 0.59 12.21 7.79 86.45 0.67 12.89 16 21 O -0.58 -17.28 16.50 -4.33 -0.07 -17.35 16 22 C -0.08 -1.34 7.06 40.35 0.28 -1.06 16 23 C -0.13 -2.28 10.65 22.57 0.24 -2.04 16 24 C -0.23 -2.66 10.81 22.01 0.24 -2.42 16 25 C 0.05 0.30 11.89 83.48 0.99 1.29 16 26 N -0.53 -4.08 5.99 -183.62 -1.10 -5.18 16 27 H 0.43 0.50 8.19 -92.71 -0.76 -0.26 16 28 C -0.09 -1.54 0.92 -52.31 -0.05 -1.59 16 29 C -0.11 -1.62 7.46 30.89 0.23 -1.39 16 30 C -0.13 -2.62 8.08 31.23 0.25 -2.37 16 31 C -0.11 -2.29 7.53 30.89 0.23 -2.05 16 32 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.39 14.56 5.76 -92.70 -0.53 14.03 16 34 H 0.12 2.57 8.13 -2.38 -0.02 2.55 16 35 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.35 10.25 7.80 -89.69 -0.70 9.55 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.78 7.82 -2.39 -0.02 1.76 16 39 H 0.41 3.21 7.71 -92.71 -0.72 2.50 16 40 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.21 -0.43 8.06 -2.91 -0.02 -0.45 16 43 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.06 1.55 7.49 -2.38 -0.02 1.54 16 48 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -84.79 398.62 -0.99 -85.78 By element: Atomic # 1 Polarization: 42.12 SS G_CDS: -1.74 Total: 40.39 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 6.22 Total: 6.58 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -7.25 Total: -121.98 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.12 Total: -50.63 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 1.90 Total: 39.87 kcal Total: -84.79 -0.99 -85.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202420332.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.027 kcal (2) G-P(sol) polarization free energy of solvation -84.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds