Wall clock time and date at job start Sat Apr 11 2020 07:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 119.99928 * 2 1 4 4 H 1.48503 * 109.47073 * 270.00280 * 3 2 1 5 5 H 1.48501 * 109.47297 * 29.99742 * 3 2 1 6 6 H 1.48496 * 109.47417 * 150.00009 * 3 2 1 7 7 C 1.38952 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00054 * 0.02562 * 7 2 1 9 9 N 1.37092 * 119.99714 * 179.97438 * 7 2 1 10 10 C 1.34783 * 119.99635 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00269 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99715 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46656 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99573 * 179.97438 * 13 12 10 15 15 H 1.08999 * 112.88313 * 25.32991 * 14 13 12 16 16 C 1.53950 * 113.66020 * 253.98658 * 14 13 12 17 17 C 1.54150 * 87.22457 * 220.82527 * 16 14 13 18 18 H 1.08999 * 113.58002 * 270.18331 * 17 16 14 19 19 N 1.46499 * 113.79960 * 139.16440 * 17 16 14 20 20 C 1.34780 * 120.00148 * 107.70854 * 19 17 16 21 21 O 1.21696 * 119.99809 * 359.97438 * 20 19 17 22 22 C 1.46678 * 120.00034 * 179.97438 * 20 19 17 23 23 C 1.37874 * 126.22764 * 179.69139 * 22 20 19 24 24 C 1.39842 * 107.08255 * 179.85109 * 23 22 20 25 25 C 1.35457 * 107.85952 * 0.41382 * 24 23 22 26 26 N 1.35528 * 108.87455 * 359.74369 * 25 24 23 27 27 H 0.97006 * 125.67653 * 179.97438 * 26 25 24 28 28 C 1.52907 * 113.65921 * 156.68117 * 14 13 12 29 29 C 1.52900 * 121.14024 * 13.64839 * 28 14 13 30 30 C 1.53947 * 86.78666 * 209.38406 * 29 28 14 31 31 C 1.52908 * 121.13387 * 265.08712 * 28 14 13 32 32 H 0.96997 * 120.00406 * 359.97438 * 1 2 3 33 33 H 0.96993 * 120.00778 * 0.02562 * 9 7 2 34 34 H 1.08990 * 109.47142 * 59.99633 * 12 10 9 35 35 H 1.09004 * 109.46726 * 299.99530 * 12 10 9 36 36 H 1.00896 * 111.00219 * 303.95295 * 13 12 10 37 37 H 1.08996 * 113.58318 * 335.39959 * 16 14 13 38 38 H 1.09006 * 113.57694 * 106.19384 * 16 14 13 39 39 H 0.97001 * 119.99903 * 287.70371 * 19 17 16 40 40 H 1.07995 * 126.46054 * 359.97438 * 23 22 20 41 41 H 1.07992 * 126.07111 * 180.16113 * 24 23 22 42 42 H 1.08010 * 125.56084 * 179.76624 * 25 24 23 43 43 H 1.08997 * 113.66354 * 323.85825 * 29 28 14 44 44 H 1.09004 * 113.66258 * 94.90643 * 29 28 14 45 45 H 1.09003 * 113.57996 * 270.13482 * 30 29 28 46 46 H 1.08998 * 113.58657 * 139.33983 * 30 29 28 47 47 H 1.09000 * 113.66376 * 265.09255 * 31 28 14 48 48 H 1.08996 * 113.66583 * 36.05740 * 31 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4210 0.0009 12 6 5.5608 -2.3704 0.0000 13 7 6.0504 -3.7554 0.0006 14 6 7.5190 -3.7946 0.0000 15 1 7.9670 -2.8982 0.4289 16 6 8.1256 -4.2007 -1.3554 17 6 9.1410 -5.0472 -0.5625 18 1 10.0461 -4.5030 -0.2928 19 7 9.4195 -6.3534 -1.1644 20 6 10.6051 -6.5801 -1.7642 21 8 11.4439 -5.6994 -1.8062 22 6 10.8841 -7.8881 -2.3664 23 6 12.0443 -8.2561 -3.0141 24 6 11.8825 -9.5832 -3.4243 25 6 10.6501 -9.9904 -3.0370 26 7 10.0333 -8.9697 -2.3932 27 1 9.1405 -8.9968 -2.0146 28 6 8.0983 -5.0963 0.5550 29 6 7.2178 -6.3291 0.7612 30 6 8.1697 -6.7100 1.9095 31 6 8.5159 -5.2140 2.0212 32 1 -0.4850 0.8400 0.0004 33 1 3.8648 -0.3633 -0.0004 34 1 5.9241 -1.8566 0.8899 35 1 5.9240 -1.8566 -0.8901 36 1 5.6750 -4.2714 0.7822 37 1 7.4524 -4.7938 -1.9743 38 1 8.5779 -3.3699 -1.8971 39 1 8.7508 -7.0553 -1.1313 40 1 12.9149 -7.6370 -3.1727 41 1 12.6094 -10.1765 -3.9590 42 1 10.2280 -10.9690 -3.2122 43 1 6.2061 -6.0938 1.0915 44 1 7.2400 -7.0275 -0.0754 45 1 9.0091 -7.3292 1.5929 46 1 7.6583 -7.1059 2.7869 47 1 9.5752 -5.0216 2.1912 48 1 7.8700 -4.6640 2.7056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202420333.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:19 Heat of formation + Delta-G solvation = 29.755577 kcal Electronic energy + Delta-G solvation = -29794.566792 eV Core-core repulsion = 25658.895878 eV Total energy + Delta-G solvation = -4135.670914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.72749 -41.11813 -38.90964 -38.36167 -35.61489 -34.76019 -33.93973 -32.57592 -31.66534 -31.32932 -29.59426 -27.17576 -26.10943 -24.86405 -24.69134 -23.49057 -22.12160 -21.01319 -20.82455 -20.43687 -19.67260 -19.43793 -18.47968 -17.89983 -16.83335 -16.31553 -16.27923 -15.58516 -15.44776 -15.38585 -15.04036 -14.79949 -14.43122 -14.12821 -14.01661 -13.87583 -13.53159 -13.26742 -13.00123 -12.93174 -12.75349 -12.65329 -12.59550 -12.26072 -12.17721 -12.10254 -11.87607 -11.52631 -11.39243 -11.16947 -10.72942 -10.61222 -10.50291 -10.32962 -10.12361 -9.99401 -9.59404 -9.39738 -9.30240 -8.61921 -8.59019 -8.22435 -8.17201 -6.33277 -3.84744 1.12616 2.39118 2.67944 2.80252 3.00985 3.05786 3.09833 3.13855 3.71678 3.97379 4.07559 4.09176 4.28780 4.35851 4.47720 4.55375 4.59441 4.66945 4.71308 4.89738 4.98214 5.05802 5.14972 5.19615 5.25188 5.33954 5.39298 5.53505 5.61125 5.62357 5.69189 5.69996 5.70627 5.78894 5.79758 5.85165 5.91698 5.95115 6.08514 6.16199 6.29047 6.35975 6.53880 6.93517 7.10971 7.20497 7.52948 7.56364 7.87074 8.12076 8.57467 8.92622 9.40275 9.80242 10.79785 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.019736 B = 0.001959 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.365268 B =14292.608466 C =14406.862351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.119 0.881 9 N -0.590 5.590 10 C 0.450 3.550 11 O -0.566 6.566 12 C 0.046 3.954 13 N -0.650 5.650 14 C 0.074 3.926 15 H 0.077 0.923 16 C -0.134 4.134 17 C 0.150 3.850 18 H 0.119 0.881 19 N -0.715 5.715 20 C 0.590 3.410 21 O -0.530 6.530 22 C -0.058 4.058 23 C -0.106 4.106 24 C -0.213 4.213 25 C 0.023 3.977 26 N -0.540 5.540 27 H 0.416 0.584 28 C -0.113 4.113 29 C -0.106 4.106 30 C -0.141 4.141 31 C -0.128 4.128 32 H 0.273 0.727 33 H 0.371 0.629 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.350 0.650 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.395 0.605 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.171 0.829 43 H 0.098 0.902 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.607 -16.444 -0.870 28.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.236 3.764 11 O -0.448 6.448 12 C -0.087 4.087 13 N -0.283 5.283 14 C -0.037 4.037 15 H 0.094 0.906 16 C -0.174 4.174 17 C 0.044 3.956 18 H 0.137 0.863 19 N -0.366 5.366 20 C 0.378 3.622 21 O -0.406 6.406 22 C -0.171 4.171 23 C -0.133 4.133 24 C -0.237 4.237 25 C -0.113 4.113 26 N -0.136 5.136 27 H 0.253 0.747 28 C -0.115 4.115 29 C -0.143 4.143 30 C -0.178 4.178 31 C -0.165 4.165 32 H 0.084 0.916 33 H 0.203 0.797 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.172 0.828 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.230 0.770 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.189 0.811 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 23.370 -16.410 -1.483 28.595 hybrid contribution -0.079 1.331 1.009 1.672 sum 23.291 -15.079 -0.473 27.751 Atomic orbital electron populations 1.69618 1.05644 1.27521 1.49310 1.25044 0.95504 0.98004 0.97627 0.86667 0.79732 0.84011 0.78943 1.19570 1.20181 1.19537 1.19424 0.79250 0.96610 1.48120 0.86303 1.42211 1.07541 1.06194 1.67008 1.19718 0.88203 0.84549 0.83973 1.90556 1.69472 1.30940 1.53861 1.21784 0.94952 0.90621 1.01299 1.60202 1.04728 1.12567 1.50805 1.22618 0.88560 0.95932 0.96555 0.90551 1.23569 0.97008 0.99683 0.97119 1.22154 0.97118 0.83671 0.92616 0.86323 1.45836 1.16725 1.15804 1.58217 1.17104 0.81880 0.85637 0.77628 1.90844 1.46349 1.44428 1.59002 1.20480 0.94323 0.89237 1.13041 1.21356 0.96896 0.95879 0.99173 1.20933 0.97743 0.96429 1.08632 1.22077 0.94903 0.93628 1.00666 1.42051 1.15597 1.10962 1.45021 0.74701 1.23198 0.96965 0.96662 0.94645 1.22485 0.98777 0.95130 0.97933 1.22853 0.99347 0.96542 0.99070 1.22774 1.01599 0.96784 0.95388 0.91601 0.79677 0.93727 0.89416 0.82809 0.88732 0.90999 0.77003 0.83490 0.83861 0.81135 0.88399 0.91925 0.90578 0.91197 0.91222 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.63 13.96 55.50 0.77 -24.86 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.31 27.74 -169.99 -4.71 14.59 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 7 C -0.31 -8.58 10.16 -14.93 -0.15 -8.74 16 8 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 9 N -0.59 -13.92 5.09 -10.96 -0.06 -13.97 16 10 C 0.45 10.01 7.82 -10.98 -0.09 9.92 16 11 O -0.57 -14.85 15.78 5.55 0.09 -14.76 16 12 C 0.05 0.74 6.02 -4.97 -0.03 0.71 16 13 N -0.65 -9.34 5.93 -107.51 -0.64 -9.98 16 14 C 0.07 0.82 4.00 -67.26 -0.27 0.55 16 15 H 0.08 0.80 7.88 -51.93 -0.41 0.40 16 16 C -0.13 -1.46 7.71 -25.64 -0.20 -1.66 16 17 C 0.15 1.45 4.12 -67.38 -0.28 1.17 16 18 H 0.12 1.28 7.46 -51.93 -0.39 0.89 16 19 N -0.72 -6.27 5.28 -54.57 -0.29 -6.56 16 20 C 0.59 6.52 7.79 -12.85 -0.10 6.42 16 21 O -0.53 -7.75 16.48 5.19 0.09 -7.67 16 22 C -0.06 -0.55 7.06 -81.98 -0.58 -1.12 16 23 C -0.11 -1.00 10.65 -39.12 -0.42 -1.42 16 24 C -0.21 -1.54 10.81 -39.97 -0.43 -1.97 16 25 C 0.02 0.13 11.89 -16.91 -0.20 -0.07 16 26 N -0.54 -3.34 5.99 -9.39 -0.06 -3.39 16 27 H 0.42 1.47 8.19 -40.82 -0.33 1.14 16 28 C -0.11 -1.03 1.00 -154.71 -0.15 -1.18 16 29 C -0.11 -0.91 7.00 -26.29 -0.18 -1.09 16 30 C -0.14 -1.07 8.08 -25.75 -0.21 -1.28 16 31 C -0.13 -1.07 7.84 -26.28 -0.21 -1.28 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 34 H 0.04 0.63 8.13 -51.93 -0.42 0.21 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.35 5.20 6.66 -39.29 -0.26 4.94 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.39 2.64 5.85 -40.82 -0.24 2.40 16 40 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 41 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.17 0.40 8.06 -52.48 -0.42 -0.02 16 43 H 0.10 0.99 6.71 -51.93 -0.35 0.65 16 44 H 0.06 0.47 6.42 -51.93 -0.33 0.13 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 394.36 15.07 5.94 5.94 Total: -1.00 -35.08 394.36 -9.20 -44.28 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -6.75 Total: 16.37 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -3.59 Total: 0.00 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.26 Total: -58.76 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.17 Total: -22.43 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.59 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.08 -9.20 -44.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202420333.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.040 kcal (2) G-P(sol) polarization free energy of solvation -35.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds