Wall clock time and date at job start Sat Apr 11 2020 07:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86793 * 120.00283 * 2 1 4 4 H 1.48498 * 109.47359 * 240.00228 * 3 2 1 5 5 H 1.48504 * 109.47353 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47344 * 119.99787 * 3 2 1 7 7 C 1.38951 * 119.99450 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99423 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00443 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99768 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00536 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99867 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47429 * 180.02562 * 12 10 9 14 14 C 1.46902 * 111.00090 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47024 * 179.97438 * 14 13 12 16 16 C 1.53041 * 109.45678 * 174.99760 * 15 14 13 17 17 C 1.53194 * 109.30749 * 181.37314 * 16 15 14 18 18 N 1.46925 * 108.77645 * 305.36428 * 17 16 15 19 19 C 1.34778 * 120.63150 * 233.58826 * 18 17 16 20 20 O 1.21516 * 119.99975 * 7.71293 * 19 18 17 21 21 C 1.48167 * 119.99817 * 187.71698 * 19 18 17 22 22 C 1.39315 * 119.72138 * 189.53554 * 21 19 18 23 23 C 1.38587 * 119.05874 * 179.76244 * 22 21 19 24 24 C 1.38629 * 118.49003 * 0.48403 * 23 22 21 25 25 C 1.38560 * 119.34760 * 359.47448 * 24 23 22 26 26 N 1.31519 * 120.90816 * 0.29928 * 25 24 23 27 27 C 1.46930 * 118.73817 * 53.86276 * 18 17 16 28 28 C 1.53036 * 109.44789 * 295.06096 * 15 14 13 29 29 H 0.96996 * 119.99789 * 0.02562 * 1 2 3 30 30 H 0.96994 * 119.99765 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.46896 * 60.00100 * 12 10 9 32 32 H 1.08996 * 109.47432 * 300.00337 * 12 10 9 33 33 H 1.00901 * 110.99831 * 303.95233 * 13 12 10 34 34 H 1.09000 * 109.47042 * 59.99993 * 14 13 12 35 35 H 1.09005 * 109.46731 * 300.00069 * 14 13 12 36 36 H 1.09005 * 109.45804 * 55.02560 * 15 14 13 37 37 H 1.08996 * 109.49550 * 61.42437 * 16 15 14 38 38 H 1.09001 * 109.49790 * 301.32164 * 16 15 14 39 39 H 1.09000 * 109.58579 * 185.58174 * 17 16 15 40 40 H 1.08999 * 109.70928 * 65.22400 * 17 16 15 41 41 H 1.08004 * 120.47092 * 0.02562 * 22 21 19 42 42 H 1.08002 * 120.75693 * 180.25598 * 23 22 21 43 43 H 1.07994 * 120.32906 * 179.75362 * 24 23 22 44 44 H 1.07998 * 119.54671 * 180.28155 * 25 24 23 45 45 H 1.09006 * 109.58453 * 65.92819 * 27 18 17 46 46 H 1.09002 * 109.58441 * 186.34816 * 27 18 17 47 47 H 1.09001 * 109.49775 * 298.57081 * 28 15 14 48 48 H 1.08997 * 109.49940 * 58.67392 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2833 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2100 -3.5579 -0.0021 12 6 1.2437 -4.8629 -0.0022 13 7 2.1982 -5.9796 -0.0027 14 6 1.4979 -7.2709 -0.0039 15 6 2.5228 -8.4069 -0.0050 16 6 1.7969 -9.7485 0.1196 17 6 2.8279 -10.8810 0.1526 18 7 3.6910 -10.7695 -1.0311 19 6 3.8607 -11.8198 -1.8586 20 8 3.1923 -12.8238 -1.7110 21 6 4.8623 -11.7501 -2.9482 22 6 4.8978 -12.7489 -3.9188 23 6 5.8370 -12.6674 -4.9346 24 6 6.7153 -11.5948 -4.9387 25 6 6.6223 -10.6372 -3.9416 26 7 5.7180 -10.7365 -2.9918 27 6 4.3705 -9.4932 -1.2923 28 6 3.3179 -8.3745 -1.3122 29 1 -0.4849 0.8400 -0.0004 30 1 0.3533 -2.3906 -0.0005 31 1 0.6167 -4.9200 -0.8920 32 1 0.6173 -4.9213 0.8879 33 1 2.8331 -5.9122 -0.7840 34 1 0.8733 -7.3446 -0.8941 35 1 0.8727 -7.3459 0.8859 36 1 3.2035 -8.2827 0.8373 37 1 1.1344 -9.8844 -0.7352 38 1 1.2123 -9.7617 1.0395 39 1 2.3148 -11.8427 0.1414 40 1 3.4336 -10.8006 1.0553 41 1 4.2003 -13.5728 -3.8825 42 1 5.8862 -13.4243 -5.7034 43 1 7.4616 -11.5041 -5.7139 44 1 7.3018 -9.7978 -3.9443 45 1 5.0991 -9.2994 -0.5050 46 1 4.8756 -9.5390 -2.2572 47 1 2.6410 -8.5234 -2.1535 48 1 3.8157 -7.4100 -1.4114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204277088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:28 Heat of formation + Delta-G solvation = -19.048561 kcal Electronic energy + Delta-G solvation = -29340.261206 eV Core-core repulsion = 25202.473986 eV Total energy + Delta-G solvation = -4137.787220 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.25191 -39.64453 -38.41438 -37.80847 -35.55469 -33.94317 -33.48406 -32.51843 -31.89149 -31.18382 -30.97092 -28.12176 -26.10134 -24.86435 -24.17424 -23.71923 -23.35304 -22.22615 -20.83846 -19.74661 -19.18301 -17.88724 -17.75309 -17.37053 -16.46871 -16.23068 -15.96069 -15.72937 -15.46438 -15.19087 -14.64800 -14.54326 -14.39531 -14.27847 -14.16074 -13.91378 -13.71885 -13.64180 -13.41462 -12.99759 -12.85184 -12.47695 -12.34846 -12.19580 -11.79286 -11.54279 -11.48921 -11.38638 -11.02178 -10.90316 -10.72372 -10.56054 -10.53965 -10.43211 -10.41339 -10.19718 -9.69875 -9.48499 -9.23829 -8.81501 -8.42331 -8.01493 -7.93720 -6.40124 -3.80933 0.19630 0.68934 2.38850 2.67378 3.21085 3.26557 3.31023 3.39078 3.66561 3.93192 4.11323 4.21231 4.32919 4.34204 4.49987 4.55305 4.65575 4.76765 4.81721 4.89108 5.00440 5.15603 5.20056 5.22603 5.27222 5.36806 5.43135 5.46602 5.54905 5.60039 5.60899 5.70917 5.80983 5.84941 5.86803 5.92755 5.96959 6.02614 6.05279 6.22439 6.28033 6.38005 6.51553 7.08776 7.25831 7.27629 7.56388 7.71909 7.84495 8.07937 8.63210 9.19353 9.56255 10.07897 10.77607 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.001822 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.897841 B =15364.487326 C =16643.451221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.669 5.669 14 C 0.064 3.936 15 C -0.087 4.087 16 C -0.126 4.126 17 C 0.109 3.891 18 N -0.587 5.587 19 C 0.569 3.431 20 O -0.541 6.541 21 C 0.081 3.919 22 C -0.112 4.112 23 C -0.080 4.080 24 C -0.150 4.150 25 C 0.094 3.906 26 N -0.447 5.447 27 C 0.072 3.928 28 C -0.134 4.134 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.348 0.652 34 H 0.024 0.976 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.167 0.833 45 H 0.068 0.932 46 H 0.148 0.852 47 H 0.059 0.941 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.904 -25.968 -8.554 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.302 5.302 14 C -0.065 4.065 15 C -0.106 4.106 16 C -0.165 4.165 17 C -0.013 4.013 18 N -0.318 5.318 19 C 0.356 3.644 20 O -0.418 6.418 21 C -0.056 4.056 22 C -0.133 4.133 23 C -0.106 4.106 24 C -0.170 4.170 25 C -0.064 4.064 26 N -0.159 5.159 27 C -0.049 4.049 28 C -0.172 4.172 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.168 0.832 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.166 0.834 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.184 0.816 45 H 0.086 0.914 46 H 0.164 0.836 47 H 0.078 0.922 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.238 -25.681 -7.114 27.892 hybrid contribution -0.573 0.407 -1.494 1.651 sum 7.665 -25.274 -8.608 27.778 Atomic orbital electron populations 1.69608 1.05927 1.28230 1.50607 1.25268 0.95648 0.99728 0.97369 0.85909 0.78741 0.80446 0.79058 1.19934 1.21006 1.19887 1.19656 0.93342 0.82264 1.47640 0.87978 1.41860 1.09197 1.04605 1.64428 1.19826 0.88394 0.84739 0.84386 1.90513 1.13765 1.87091 1.55391 1.21670 0.94422 0.91055 1.01120 1.60129 1.18818 0.99948 1.51278 1.21997 0.95314 0.88996 1.00241 1.21180 0.97368 0.93227 0.98801 1.21913 0.97711 0.94063 1.02789 1.21690 0.92426 1.00241 0.86909 1.47993 1.46373 1.12427 1.24992 1.17913 0.82076 0.83265 0.81180 1.90768 1.47003 1.31795 1.72236 1.21215 0.95892 0.92428 0.96107 1.22122 0.98769 0.99046 0.93356 1.21680 0.93542 0.97781 0.97549 1.22406 0.99678 0.95015 0.99882 1.23063 0.94921 0.98513 0.89946 1.67607 1.03696 1.20669 1.23951 1.23163 0.94279 0.80552 1.06951 1.22131 0.98262 0.99344 0.97488 0.91846 0.77464 0.94032 0.89662 0.83208 0.95739 0.91090 0.89780 0.91600 0.90413 0.89069 0.91075 0.83425 0.83954 0.84059 0.81603 0.91380 0.83631 0.92204 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 9 N -0.56 -14.47 5.29 -10.97 -0.06 -14.53 16 10 C 0.44 10.56 7.82 -10.99 -0.09 10.47 16 11 O -0.58 -15.96 15.78 5.55 0.09 -15.87 16 12 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 13 N -0.67 -10.94 6.13 -115.05 -0.70 -11.64 16 14 C 0.06 0.81 5.14 -3.82 -0.02 0.79 16 15 C -0.09 -0.94 2.36 -90.58 -0.21 -1.16 16 16 C -0.13 -1.20 5.36 -26.61 -0.14 -1.34 16 17 C 0.11 1.09 6.44 -3.71 -0.02 1.06 16 18 N -0.59 -6.44 2.97 -173.49 -0.51 -6.95 16 19 C 0.57 6.87 7.65 -12.18 -0.09 6.77 16 20 O -0.54 -7.74 15.79 5.35 0.08 -7.66 16 21 C 0.08 0.81 6.58 -83.00 -0.55 0.27 16 22 C -0.11 -0.90 9.63 -39.05 -0.38 -1.27 16 23 C -0.08 -0.43 10.17 -39.31 -0.40 -0.83 16 24 C -0.15 -0.72 10.11 -39.32 -0.40 -1.12 16 25 C 0.09 0.59 11.18 -17.57 -0.20 0.39 16 26 N -0.45 -4.02 6.12 -9.80 -0.06 -4.08 16 27 C 0.07 0.74 5.92 -3.48 -0.02 0.72 16 28 C -0.13 -1.44 5.17 -26.39 -0.14 -1.58 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.35 5.83 6.65 -39.29 -0.26 5.56 16 34 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.96 7.00 -51.93 -0.36 0.59 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.15 1.12 7.67 -52.48 -0.40 0.72 16 42 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 43 H 0.14 0.28 8.06 -52.49 -0.42 -0.14 16 44 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.15 1.47 4.00 -85.16 -0.34 1.13 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.08 0.94 6.62 -51.93 -0.34 0.60 16 LS Contribution 391.79 15.07 5.90 5.90 Total: -1.00 -34.02 391.79 -9.52 -43.54 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -7.04 Total: 13.16 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -2.92 Total: 5.97 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -0.61 Total: -61.18 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.17 Total: -23.53 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.02 -9.52 -43.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204277088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.495 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds