Wall clock time and date at job start Sat Apr 11 2020 07:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86793 * 120.00283 * 2 1 4 4 H 1.48498 * 109.47359 * 240.00228 * 3 2 1 5 5 H 1.48504 * 109.47353 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47344 * 119.99787 * 3 2 1 7 7 C 1.38951 * 119.99450 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99423 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00443 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99768 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00536 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99867 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47429 * 180.02562 * 12 10 9 14 14 C 1.46902 * 111.00090 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47024 * 179.97438 * 14 13 12 16 16 C 1.53041 * 109.45678 * 174.99760 * 15 14 13 17 17 C 1.53194 * 109.30749 * 181.37314 * 16 15 14 18 18 N 1.46925 * 108.77645 * 305.36428 * 17 16 15 19 19 C 1.34778 * 120.63150 * 233.58826 * 18 17 16 20 20 O 1.21516 * 119.99975 * 7.71293 * 19 18 17 21 21 C 1.48167 * 119.99817 * 187.71698 * 19 18 17 22 22 C 1.39315 * 119.72138 * 189.53554 * 21 19 18 23 23 C 1.38587 * 119.05874 * 179.76244 * 22 21 19 24 24 C 1.38629 * 118.49003 * 0.48403 * 23 22 21 25 25 C 1.38560 * 119.34760 * 359.47448 * 24 23 22 26 26 N 1.31519 * 120.90816 * 0.29928 * 25 24 23 27 27 C 1.46930 * 118.73817 * 53.86276 * 18 17 16 28 28 C 1.53036 * 109.44789 * 295.06096 * 15 14 13 29 29 H 0.96996 * 119.99789 * 0.02562 * 1 2 3 30 30 H 0.96994 * 119.99765 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.46896 * 60.00100 * 12 10 9 32 32 H 1.08996 * 109.47432 * 300.00337 * 12 10 9 33 33 H 1.00901 * 110.99831 * 303.95233 * 13 12 10 34 34 H 1.09000 * 109.47042 * 59.99993 * 14 13 12 35 35 H 1.09005 * 109.46731 * 300.00069 * 14 13 12 36 36 H 1.09005 * 109.45804 * 55.02560 * 15 14 13 37 37 H 1.08996 * 109.49550 * 61.42437 * 16 15 14 38 38 H 1.09001 * 109.49790 * 301.32164 * 16 15 14 39 39 H 1.09000 * 109.58579 * 185.58174 * 17 16 15 40 40 H 1.08999 * 109.70928 * 65.22400 * 17 16 15 41 41 H 1.08004 * 120.47092 * 0.02562 * 22 21 19 42 42 H 1.08002 * 120.75693 * 180.25598 * 23 22 21 43 43 H 1.07994 * 120.32906 * 179.75362 * 24 23 22 44 44 H 1.07998 * 119.54671 * 180.28155 * 25 24 23 45 45 H 1.09006 * 109.58453 * 65.92819 * 27 18 17 46 46 H 1.09002 * 109.58441 * 186.34816 * 27 18 17 47 47 H 1.09001 * 109.49775 * 298.57081 * 28 15 14 48 48 H 1.08997 * 109.49940 * 58.67392 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2833 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2100 -3.5579 -0.0021 12 6 1.2437 -4.8629 -0.0022 13 7 2.1982 -5.9796 -0.0027 14 6 1.4979 -7.2709 -0.0039 15 6 2.5228 -8.4069 -0.0050 16 6 1.7969 -9.7485 0.1196 17 6 2.8279 -10.8810 0.1526 18 7 3.6910 -10.7695 -1.0311 19 6 3.8607 -11.8198 -1.8586 20 8 3.1923 -12.8238 -1.7110 21 6 4.8623 -11.7501 -2.9482 22 6 4.8978 -12.7489 -3.9188 23 6 5.8370 -12.6674 -4.9346 24 6 6.7153 -11.5948 -4.9387 25 6 6.6223 -10.6372 -3.9416 26 7 5.7180 -10.7365 -2.9918 27 6 4.3705 -9.4932 -1.2923 28 6 3.3179 -8.3745 -1.3122 29 1 -0.4849 0.8400 -0.0004 30 1 0.3533 -2.3906 -0.0005 31 1 0.6167 -4.9200 -0.8920 32 1 0.6173 -4.9213 0.8879 33 1 2.8331 -5.9122 -0.7840 34 1 0.8733 -7.3446 -0.8941 35 1 0.8727 -7.3459 0.8859 36 1 3.2035 -8.2827 0.8373 37 1 1.1344 -9.8844 -0.7352 38 1 1.2123 -9.7617 1.0395 39 1 2.3148 -11.8427 0.1414 40 1 3.4336 -10.8006 1.0553 41 1 4.2003 -13.5728 -3.8825 42 1 5.8862 -13.4243 -5.7034 43 1 7.4616 -11.5041 -5.7139 44 1 7.3018 -9.7978 -3.9443 45 1 5.0991 -9.2994 -0.5050 46 1 4.8756 -9.5390 -2.2572 47 1 2.6410 -8.5234 -2.1535 48 1 3.8157 -7.4100 -1.4114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204277088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:27 Heat of formation + Delta-G solvation = -42.767274 kcal Electronic energy + Delta-G solvation = -29341.289727 eV Core-core repulsion = 25202.473986 eV Total energy + Delta-G solvation = -4138.815741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.93948 -40.41179 -40.10229 -38.90882 -36.76409 -35.87196 -34.30351 -33.40050 -33.18038 -32.53177 -31.74216 -29.37235 -27.46004 -26.07989 -25.02782 -24.71091 -24.12453 -23.14516 -21.70569 -21.10516 -20.48777 -19.89794 -18.53627 -18.04963 -17.81199 -17.06530 -16.99318 -16.71960 -16.49762 -16.42283 -16.00704 -15.78858 -15.56083 -15.32712 -15.19378 -14.84913 -14.81176 -14.73492 -14.34530 -14.08429 -13.96772 -13.75432 -13.45857 -13.14701 -13.09837 -12.90554 -12.82405 -12.68151 -12.42876 -12.19823 -12.12179 -11.85294 -11.54941 -11.49385 -11.45261 -11.41838 -10.94797 -10.34524 -10.25861 -10.01529 -9.90607 -9.66350 -9.31322 -8.46081 -5.95046 -0.38166 0.21659 1.40533 1.42304 1.53451 1.63802 1.89413 2.05323 2.29731 2.80080 2.92673 3.02304 3.20993 3.53313 3.61495 3.83019 3.88009 3.94131 3.97757 4.04428 4.08084 4.16091 4.32148 4.35676 4.37792 4.46021 4.50327 4.56124 4.57212 4.66320 4.73170 4.75606 4.87347 4.98467 4.99877 5.03731 5.06950 5.16530 5.17189 5.24904 5.41001 5.46043 5.53019 5.80467 5.90261 6.11755 6.27541 6.42572 6.60360 6.65169 7.01421 7.12599 7.56292 8.11413 8.71071 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.001822 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.897841 B =15364.487326 C =16643.451221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.622 6.622 12 C 0.064 3.936 13 N -0.681 5.681 14 C 0.068 3.932 15 C -0.080 4.080 16 C -0.116 4.116 17 C 0.107 3.893 18 N -0.588 5.588 19 C 0.561 3.439 20 O -0.575 6.575 21 C 0.050 3.950 22 C -0.122 4.122 23 C -0.076 4.076 24 C -0.135 4.135 25 C 0.084 3.916 26 N -0.467 5.467 27 C 0.077 3.923 28 C -0.128 4.128 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.343 0.657 34 H 0.033 0.967 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.143 0.857 42 H 0.174 0.826 43 H 0.178 0.822 44 H 0.191 0.809 45 H 0.066 0.934 46 H 0.153 0.847 47 H 0.056 0.944 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.496 -26.147 -9.681 29.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.508 6.508 12 C -0.069 4.069 13 N -0.315 5.315 14 C -0.061 4.061 15 C -0.099 4.099 16 C -0.154 4.154 17 C -0.015 4.015 18 N -0.318 5.318 19 C 0.350 3.650 20 O -0.455 6.455 21 C -0.086 4.086 22 C -0.143 4.143 23 C -0.102 4.102 24 C -0.154 4.154 25 C -0.075 4.075 26 N -0.179 5.179 27 C -0.045 4.045 28 C -0.167 4.167 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.163 0.837 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.161 0.839 42 H 0.192 0.808 43 H 0.195 0.805 44 H 0.208 0.792 45 H 0.085 0.915 46 H 0.168 0.832 47 H 0.074 0.926 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.800 -25.868 -8.231 28.537 hybrid contribution -0.680 0.410 -1.202 1.440 sum 8.120 -25.458 -9.432 28.338 Atomic orbital electron populations 1.69671 1.06849 1.29365 1.50258 1.26072 0.96582 1.02495 0.96269 0.84967 0.77734 0.76521 0.78986 1.19576 1.19529 1.19730 1.19646 0.92745 0.84015 1.50013 0.90234 1.41933 1.09331 1.04734 1.65047 1.20865 0.88281 0.86145 0.82220 1.90481 1.15782 1.87956 1.56623 1.21539 0.94115 0.88291 1.02935 1.60146 1.19030 1.00907 1.51368 1.22059 0.95586 0.87436 1.01030 1.21107 0.96962 0.93377 0.98458 1.21830 0.97362 0.92823 1.03435 1.21755 0.92642 1.00073 0.87065 1.48102 1.46270 1.12448 1.25019 1.18349 0.82193 0.82880 0.81623 1.90727 1.48527 1.32903 1.73353 1.21018 0.96731 0.94132 0.96677 1.22235 0.99621 0.98518 0.93906 1.22070 0.92371 0.98608 0.97122 1.22829 0.99385 0.93575 0.99619 1.23596 0.94532 0.99708 0.89635 1.67434 1.04413 1.20714 1.25345 1.23168 0.93988 0.80011 1.07321 1.22062 0.98241 0.99036 0.97348 0.91303 0.76997 0.91887 0.87853 0.83705 0.94922 0.90120 0.90518 0.92082 0.88728 0.89797 0.90156 0.83931 0.80840 0.80452 0.79248 0.91545 0.83154 0.92560 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.92 13.05 21.66 0.28 -49.64 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -29.72 5.29 -306.99 -1.62 -31.34 16 10 C 0.44 21.06 7.82 87.66 0.69 21.75 16 11 O -0.62 -34.69 15.78 -3.05 -0.05 -34.74 16 12 C 0.06 2.22 6.17 85.56 0.53 2.75 16 13 N -0.68 -21.68 6.13 -517.91 -3.17 -24.85 16 14 C 0.07 1.59 5.14 86.30 0.44 2.04 16 15 C -0.08 -1.68 2.36 -10.77 -0.03 -1.70 16 16 C -0.12 -2.10 5.36 30.67 0.16 -1.93 16 17 C 0.11 2.12 6.44 86.36 0.56 2.68 16 18 N -0.59 -13.20 2.97 -821.08 -2.44 -15.64 16 19 C 0.56 14.14 7.65 86.88 0.67 14.81 16 20 O -0.57 -17.35 15.79 -3.77 -0.06 -17.41 16 21 C 0.05 1.03 6.58 41.91 0.28 1.30 16 22 C -0.12 -1.92 9.63 22.61 0.22 -1.70 16 23 C -0.08 -0.64 10.17 22.45 0.23 -0.41 16 24 C -0.13 -0.88 10.11 22.44 0.23 -0.65 16 25 C 0.08 0.90 11.18 84.82 0.95 1.84 16 26 N -0.47 -8.21 6.12 -184.91 -1.13 -9.34 16 27 C 0.08 1.59 5.92 86.51 0.51 2.10 16 28 C -0.13 -2.75 5.17 30.82 0.16 -2.59 16 29 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.40 19.51 7.90 -92.71 -0.73 18.77 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 32 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 33 H 0.34 11.43 6.65 -89.69 -0.60 10.83 16 34 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.81 7.00 -2.39 -0.02 1.80 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 41 H 0.14 2.27 7.67 -2.91 -0.02 2.25 16 42 H 0.17 0.32 8.06 -2.91 -0.02 0.29 16 43 H 0.18 -0.12 8.06 -2.91 -0.02 -0.15 16 44 H 0.19 0.96 8.06 -2.91 -0.02 0.93 16 45 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.15 3.07 4.00 -68.01 -0.27 2.80 16 47 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.07 1.70 6.62 -2.39 -0.02 1.69 16 Total: -1.00 -75.16 391.79 0.12 -75.04 By element: Atomic # 1 Polarization: 41.85 SS G_CDS: -0.59 Total: 41.26 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 6.87 Total: 21.65 kcal Atomic # 7 Polarization: -122.74 SS G_CDS: -8.08 Total: -130.82 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -0.11 Total: -52.15 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -75.16 0.12 -75.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204277088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.273 kcal (2) G-P(sol) polarization free energy of solvation -75.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds