Wall clock time and date at job start Sat Apr 11 2020 07:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99619 * 2 1 4 4 H 1.48501 * 109.47584 * 270.00246 * 3 2 1 5 5 H 1.48504 * 109.47369 * 30.00200 * 3 2 1 6 6 H 1.48505 * 109.47503 * 150.00000 * 3 2 1 7 7 C 1.38807 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99928 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00190 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99858 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46938 * 180.02562 * 10 9 7 12 12 C 1.53042 * 109.46433 * 174.99988 * 11 10 9 13 13 C 1.53184 * 109.31607 * 181.38265 * 12 11 10 14 14 N 1.46926 * 108.77811 * 305.36731 * 13 12 11 15 15 C 1.34777 * 120.63076 * 233.58827 * 14 13 12 16 16 O 1.21288 * 119.99952 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00348 * 179.97438 * 15 14 13 18 18 N 1.46492 * 109.47359 * 179.97438 * 17 15 14 19 19 C 1.34781 * 119.99838 * 179.97438 * 18 17 15 20 20 O 1.21514 * 120.00459 * 0.02562 * 19 18 17 21 21 C 1.48175 * 119.99986 * 179.97438 * 19 18 17 22 22 C 1.39302 * 119.72256 * 180.02562 * 21 19 18 23 23 C 1.38596 * 119.05902 * 179.97438 * 22 21 19 24 24 C 1.38630 * 118.48529 * 359.97438 * 23 22 21 25 25 C 1.38558 * 119.35539 * 0.28231 * 24 23 22 26 26 N 1.31533 * 120.89638 * 359.41561 * 25 24 23 27 27 C 1.46923 * 118.73957 * 53.85627 * 14 13 12 28 28 C 1.53049 * 109.46025 * 295.06797 * 11 10 9 29 29 H 0.96995 * 120.00488 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99762 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47266 * 60.00342 * 10 9 7 32 32 H 1.09001 * 109.47356 * 299.99706 * 10 9 7 33 33 H 1.09001 * 109.46433 * 55.02133 * 11 10 9 34 34 H 1.09002 * 109.49301 * 61.43103 * 12 11 10 35 35 H 1.08998 * 109.52140 * 301.35709 * 12 11 10 36 36 H 1.09001 * 109.59005 * 185.57744 * 13 12 11 37 37 H 1.09004 * 109.70720 * 65.22097 * 13 12 11 38 38 H 1.09008 * 109.46895 * 59.99256 * 17 15 14 39 39 H 1.09005 * 109.47051 * 300.00133 * 17 15 14 40 40 H 0.97001 * 120.00364 * 359.97438 * 18 17 15 41 41 H 1.08000 * 120.47545 * 359.94755 * 22 21 19 42 42 H 1.07991 * 120.75611 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.31909 * 179.97438 * 24 23 22 44 44 H 1.07994 * 119.54941 * 179.70362 * 25 24 23 45 45 H 1.08998 * 109.58670 * 65.93034 * 27 14 13 46 46 H 1.09000 * 109.58734 * 186.35450 * 27 14 13 47 47 H 1.08999 * 109.49574 * 298.56897 * 28 11 10 48 48 H 1.08993 * 109.49448 * 58.66321 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0642 -4.8196 -0.0012 12 6 1.8256 -6.1413 -0.1269 13 6 0.8253 -7.3009 -0.1620 14 7 -0.0413 -7.2140 1.0213 15 6 -0.1833 -8.2694 1.8474 16 8 0.4068 -9.3036 1.6170 17 6 -1.0754 -8.1644 3.0575 18 7 -1.0609 -9.4350 3.7865 19 6 -1.7908 -9.5751 4.9109 20 8 -2.4612 -8.6477 5.3197 21 6 -1.7767 -10.8605 5.6480 22 6 -2.5337 -10.9991 6.8091 23 6 -2.5108 -12.2075 7.4874 24 6 -1.7316 -13.2358 6.9800 25 6 -0.9996 -13.0258 5.8225 26 7 -1.0442 -11.8704 5.1955 27 6 -0.7547 -5.9567 1.2837 28 6 0.2676 -4.8102 1.3056 29 1 -0.4850 0.8400 0.0004 30 1 0.3558 -2.3881 -0.0005 31 1 2.6849 -3.7144 0.8894 32 1 2.6850 -3.7144 -0.8905 33 1 0.3807 -4.7127 -0.8435 34 1 2.4910 -6.2605 0.7281 35 1 2.4114 -6.1381 -1.0461 36 1 1.3638 -8.2485 -0.1517 37 1 0.2182 -7.2355 -1.0650 38 1 -2.0936 -7.9396 2.7399 39 1 -0.7135 -7.3679 3.7077 40 1 -0.5261 -10.1755 3.4601 41 1 -3.1296 -10.1765 7.1760 42 1 -3.0874 -12.3452 8.3900 43 1 -1.6917 -14.1897 7.4850 44 1 -0.3879 -13.8231 5.4272 45 1 -1.4876 -5.7813 0.4962 46 1 -1.2589 -6.0170 2.2482 47 1 0.9477 -4.9420 2.1472 48 1 -0.2558 -3.8595 1.4057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206946898.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:46 Heat of formation + Delta-G solvation = -23.175825 kcal Electronic energy + Delta-G solvation = -29158.765407 eV Core-core repulsion = 25020.799215 eV Total energy + Delta-G solvation = -4137.966192 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.06487 -40.39973 -39.13886 -37.81227 -35.03923 -34.82849 -33.12212 -32.89813 -31.95182 -31.25967 -30.34344 -28.50734 -26.51306 -24.81725 -23.95486 -23.62514 -23.24924 -21.82327 -21.07919 -20.34301 -19.42160 -18.55852 -17.39059 -17.10865 -16.73791 -16.64866 -16.23422 -15.99300 -15.49611 -15.27632 -15.07663 -14.76652 -14.32314 -14.19315 -14.11850 -13.91858 -13.73344 -13.64429 -13.47062 -13.23885 -12.75030 -12.66091 -12.46682 -12.42256 -12.24545 -11.83939 -11.19915 -11.01082 -10.84558 -10.72620 -10.47806 -10.44837 -10.40652 -10.32362 -10.04694 -10.00030 -9.92683 -9.73726 -9.66000 -9.42929 -8.87810 -8.74021 -6.92151 -5.77535 -3.05670 0.18244 0.72201 2.31934 2.39246 2.44454 3.03461 3.43293 3.43905 3.48709 3.50143 3.71027 4.17326 4.31682 4.35467 4.49116 4.56133 4.58270 4.79384 4.91051 4.97045 4.99916 5.06054 5.08957 5.13413 5.23046 5.32010 5.43295 5.48223 5.53862 5.59871 5.60934 5.74604 5.89471 5.91415 5.96606 6.06460 6.08097 6.16050 6.25079 6.36217 6.43848 6.59976 6.78484 6.90057 7.05534 7.19024 7.37679 7.69865 7.81683 7.89647 8.41851 9.53078 10.10932 10.45576 11.45386 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.001745 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.417947 B =16042.362837 C =16973.129630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.126 4.126 13 C 0.113 3.887 14 N -0.601 5.601 15 C 0.511 3.489 16 O -0.543 6.543 17 C 0.098 3.902 18 N -0.698 5.698 19 C 0.573 3.427 20 O -0.532 6.532 21 C 0.080 3.920 22 C -0.110 4.110 23 C -0.082 4.082 24 C -0.150 4.150 25 C 0.099 3.901 26 N -0.457 5.457 27 C 0.100 3.900 28 C -0.125 4.125 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.422 0.578 41 H 0.150 0.850 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.164 0.836 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.065 0.935 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.356 -28.232 11.404 30.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.030 3.970 11 C -0.113 4.113 12 C -0.164 4.164 13 C -0.009 4.009 14 N -0.334 5.334 15 C 0.298 3.702 16 O -0.421 6.421 17 C -0.029 4.029 18 N -0.352 5.352 19 C 0.357 3.643 20 O -0.408 6.408 21 C -0.058 4.058 22 C -0.131 4.131 23 C -0.108 4.108 24 C -0.170 4.170 25 C -0.061 4.061 26 N -0.168 5.168 27 C -0.022 4.022 28 C -0.164 4.164 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.262 0.738 41 H 0.168 0.832 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.182 0.818 45 H 0.095 0.905 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.894 -27.810 10.765 30.219 hybrid contribution -0.070 0.608 0.599 0.856 sum -4.964 -27.202 11.364 29.895 Atomic orbital electron populations 1.69647 1.05068 1.25640 1.57919 1.24723 0.95531 0.97653 1.03084 0.86196 0.78655 0.83874 0.77499 1.21755 1.21779 1.20816 1.19234 0.91046 0.84236 1.42509 0.91270 1.42366 1.05801 0.99963 1.89478 1.20666 0.93161 0.85369 0.97780 1.21317 0.97888 0.94437 0.97698 1.21913 0.97705 0.93998 1.02831 1.21672 0.92456 1.00236 0.86530 1.48101 1.46421 1.12862 1.26034 1.20378 0.82213 0.83561 0.84045 1.90690 1.48366 1.29059 1.74019 1.21198 1.01101 0.87886 0.92757 1.45552 1.48329 1.16008 1.25358 1.17843 0.79636 0.86401 0.80384 1.90816 1.42169 1.40141 1.67650 1.21055 0.96548 0.93445 0.94777 1.22164 0.97858 0.98889 0.94198 1.21670 0.97254 0.92347 0.99531 1.22431 0.96872 1.00408 0.97321 1.22851 0.96848 0.94218 0.92166 1.67585 1.17101 1.00274 1.31876 1.22090 0.94996 0.82995 1.02139 1.22011 0.97881 0.98160 0.98303 0.93535 0.78270 0.96415 0.96358 0.90881 0.91530 0.90511 0.89115 0.91238 0.87959 0.87788 0.73762 0.83216 0.83893 0.84074 0.81848 0.90517 0.89722 0.91622 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -17.96 5.32 -59.91 -0.32 -18.28 16 10 C 0.16 3.06 5.65 -4.05 -0.02 3.04 16 11 C -0.09 -1.40 2.19 -90.57 -0.20 -1.60 16 12 C -0.13 -1.55 5.36 -26.61 -0.14 -1.70 16 13 C 0.11 1.30 6.43 -3.71 -0.02 1.28 16 14 N -0.60 -6.98 2.97 -172.51 -0.51 -7.49 16 15 C 0.51 6.29 7.77 -10.99 -0.09 6.20 16 16 O -0.54 -8.09 15.08 5.55 0.08 -8.01 16 17 C 0.10 1.05 4.50 -5.20 -0.02 1.02 16 18 N -0.70 -8.02 5.52 -62.32 -0.34 -8.37 16 19 C 0.57 6.90 7.81 -12.18 -0.10 6.80 16 20 O -0.53 -7.51 16.32 5.35 0.09 -7.43 16 21 C 0.08 0.82 6.75 -83.01 -0.56 0.26 16 22 C -0.11 -0.89 9.63 -39.05 -0.38 -1.27 16 23 C -0.08 -0.44 10.17 -39.30 -0.40 -0.84 16 24 C -0.15 -0.71 10.11 -39.32 -0.40 -1.11 16 25 C 0.10 0.64 11.18 -17.56 -0.20 0.45 16 26 N -0.46 -4.40 9.54 -9.80 -0.09 -4.49 16 27 C 0.10 1.09 6.37 -3.49 -0.02 1.07 16 28 C -0.13 -1.74 5.26 -26.38 -0.14 -1.88 16 29 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.38 9.74 6.84 -40.82 -0.28 9.46 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.09 7.01 -51.93 -0.36 0.73 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.98 7.93 -51.92 -0.41 0.57 16 39 H 0.10 1.07 7.70 -51.93 -0.40 0.67 16 40 H 0.42 5.02 6.77 -40.82 -0.28 4.74 16 41 H 0.15 1.13 7.64 -52.49 -0.40 0.73 16 42 H 0.14 0.37 8.06 -52.49 -0.42 -0.06 16 43 H 0.14 0.24 8.06 -52.49 -0.42 -0.18 16 44 H 0.16 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.78 5.93 -51.93 -0.31 0.47 16 47 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.09 1.46 7.15 -51.93 -0.37 1.09 16 LS Contribution 395.77 15.07 5.96 5.96 Total: -1.00 -34.42 395.77 -9.37 -43.79 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.01 Total: 9.64 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -2.93 Total: 4.45 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -0.54 Total: -65.71 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.17 Total: -15.43 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.42 -9.37 -43.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206946898.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.615 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds