Wall clock time and date at job start Sat Apr 11 2020 07:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48500 * 109.47547 * 270.00234 * 3 2 1 5 5 H 1.48503 * 109.47399 * 30.00438 * 3 2 1 6 6 H 1.48501 * 109.46984 * 150.00296 * 3 2 1 7 7 C 1.38946 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99726 * 359.97438 * 7 2 1 9 9 N 1.37093 * 120.00112 * 179.97438 * 7 2 1 10 10 C 1.34781 * 120.00189 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99682 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99827 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.46903 * 111.00326 * 180.02562 * 13 12 10 15 15 H 1.09007 * 109.51985 * 324.91920 * 14 13 12 16 16 C 1.53035 * 109.50014 * 204.84003 * 14 13 12 17 17 C 1.53038 * 109.54014 * 178.68381 * 16 14 13 18 18 C 1.52759 * 109.38374 * 61.23404 * 17 16 14 19 19 N 1.46915 * 109.01082 * 305.59030 * 18 17 16 20 20 C 1.34781 * 120.63375 * 233.58622 * 19 18 17 21 21 O 1.21784 * 120.00009 * 174.72714 * 20 19 18 22 22 C 1.41517 * 119.99452 * 354.72481 * 20 19 18 23 23 C 1.35620 * 119.99492 * 216.10917 * 22 20 19 24 24 C 1.41668 * 120.00143 * 7.31361 * 23 22 20 25 25 C 1.38289 * 126.25330 * 213.52294 * 24 23 22 26 26 C 1.39789 * 107.07475 * 180.11311 * 25 24 23 27 27 C 1.35505 * 107.91014 * 359.63364 * 26 25 24 28 28 N 1.35756 * 108.90700 * 0.22897 * 27 26 25 29 29 H 0.97001 * 125.68691 * 179.97438 * 28 27 26 30 30 C 1.46927 * 118.73791 * 53.30832 * 19 18 17 31 31 H 0.96997 * 120.00592 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00526 * 0.02562 * 9 7 2 33 33 H 1.08993 * 109.47414 * 60.00631 * 12 10 9 34 34 H 1.09000 * 109.47318 * 299.99945 * 12 10 9 35 35 H 1.00900 * 111.00024 * 303.95455 * 13 12 10 36 36 H 1.09005 * 109.45964 * 298.70019 * 16 14 13 37 37 H 1.08996 * 109.46374 * 58.67015 * 16 14 13 38 38 H 1.09000 * 109.49951 * 181.31575 * 17 16 14 39 39 H 1.09005 * 109.49252 * 301.40932 * 17 16 14 40 40 H 1.09004 * 109.50965 * 185.70525 * 18 17 16 41 41 H 1.09007 * 109.42816 * 65.43071 * 18 17 16 42 42 H 1.07994 * 120.00254 * 36.11184 * 22 20 19 43 43 H 1.08002 * 119.99332 * 187.31091 * 23 22 20 44 44 H 1.07996 * 126.46250 * 0.02562 * 25 24 23 45 45 H 1.07994 * 126.04426 * 179.89776 * 26 25 24 46 46 H 1.07995 * 125.54395 * 180.22688 * 27 26 25 47 47 H 1.09000 * 109.58471 * 66.43427 * 30 19 18 48 48 H 1.09007 * 109.58675 * 186.71138 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4473 -3.4209 -0.0011 12 6 5.5607 -2.3703 -0.0011 13 7 6.0505 -3.7553 -0.0017 14 6 7.5190 -3.7945 -0.0011 15 1 7.9058 -2.9634 -0.5909 16 6 7.9950 -5.1164 -0.6077 17 6 9.5248 -5.1444 -0.6376 18 6 10.0617 -5.0455 0.7891 19 7 9.4921 -3.8543 1.4333 20 6 10.2933 -2.9331 2.0043 21 8 9.8173 -1.9044 2.4499 22 6 11.6875 -3.1613 2.0862 23 6 12.3809 -2.7396 3.1728 24 6 11.6914 -2.2113 4.2919 25 6 12.1412 -1.2082 5.1308 26 6 11.1506 -1.0052 6.0959 27 6 10.1323 -1.8599 5.8340 28 7 10.4485 -2.5988 4.7399 29 1 9.8917 -3.2854 4.3406 30 6 8.0329 -3.6831 1.4377 31 1 -0.4851 0.8400 0.0004 32 1 3.8648 -0.3633 -0.0007 33 1 5.9241 -1.8566 0.8889 34 1 5.9241 -1.8565 -0.8910 35 1 5.6750 -4.2720 0.7794 36 1 7.6284 -5.9462 -0.0032 37 1 7.6103 -5.2094 -1.6233 38 1 9.8628 -6.0762 -1.0911 39 1 9.8927 -4.3007 -1.2215 40 1 11.1483 -4.9633 0.7642 41 1 9.7733 -5.9362 1.3476 42 1 12.1993 -3.6712 1.2835 43 1 13.4588 -2.8065 3.1849 44 1 13.0813 -0.6819 5.0554 45 1 11.1881 -0.2903 6.9045 46 1 9.2179 -1.9403 6.4031 47 1 7.5757 -4.4603 2.0502 48 1 7.7811 -2.7031 1.8431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207892659.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:54 Heat of formation + Delta-G solvation = 15.857804 kcal Electronic energy + Delta-G solvation = -30122.740787 eV Core-core repulsion = 25986.467220 eV Total energy + Delta-G solvation = -4136.273566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56288 -40.37734 -38.65459 -37.84061 -35.26645 -34.18579 -33.88888 -32.63221 -31.66607 -31.15206 -30.27966 -28.59909 -26.50616 -25.98394 -24.07948 -23.38084 -22.54714 -21.14387 -20.58410 -20.45473 -19.47230 -19.29061 -18.32677 -18.07584 -17.01950 -16.39964 -15.92020 -15.57838 -15.23014 -14.91051 -14.71501 -14.61584 -14.48334 -14.20520 -14.12397 -14.00400 -13.67188 -13.50984 -13.17467 -13.07959 -12.99134 -12.79660 -12.48991 -12.44757 -12.27674 -12.04461 -11.82293 -11.61077 -11.20206 -11.17696 -11.13000 -10.84813 -10.57909 -10.43077 -10.03894 -9.97082 -9.57162 -9.16499 -9.00562 -8.59266 -8.19737 -8.14969 -7.87893 -6.31039 -3.82477 0.51523 2.21687 2.67511 2.72936 2.97419 3.04963 3.08940 3.16716 3.20804 3.73218 3.98030 4.11334 4.31032 4.45183 4.59621 4.64814 4.67462 4.72679 4.88955 4.93968 4.99118 5.05696 5.17887 5.19335 5.21929 5.28639 5.32247 5.40611 5.49598 5.52481 5.61595 5.63975 5.68461 5.74395 5.83319 5.91675 6.01807 6.05528 6.07172 6.10681 6.16344 6.73044 6.89190 7.02007 7.07219 7.32419 7.48754 7.58049 7.87322 8.14126 8.59555 8.94716 9.42497 9.82140 10.81980 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.010326 B = 0.002628 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.054021 B =10651.206550 C =12675.325563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.450 3.550 11 O -0.566 6.566 12 C 0.046 3.954 13 N -0.656 5.656 14 C 0.076 3.924 15 H 0.080 0.920 16 C -0.108 4.108 17 C -0.135 4.135 18 C 0.106 3.894 19 N -0.608 5.608 20 C 0.539 3.461 21 O -0.530 6.530 22 C -0.244 4.244 23 C 0.017 3.983 24 C 0.010 3.990 25 C -0.153 4.153 26 C -0.210 4.210 27 C 0.016 3.984 28 N -0.525 5.525 29 H 0.411 0.589 30 C 0.078 3.922 31 H 0.274 0.726 32 H 0.371 0.629 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.351 0.649 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.139 0.861 43 H 0.145 0.855 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.163 0.837 47 H 0.068 0.932 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.048 -8.168 6.396 31.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.236 3.764 11 O -0.448 6.448 12 C -0.087 4.087 13 N -0.287 5.287 14 C -0.035 4.035 15 H 0.099 0.901 16 C -0.146 4.146 17 C -0.174 4.174 18 C -0.017 4.017 19 N -0.342 5.342 20 C 0.330 3.670 21 O -0.409 6.409 22 C -0.266 4.266 23 C -0.003 4.003 24 C -0.101 4.101 25 C -0.178 4.178 26 C -0.234 4.234 27 C -0.120 4.120 28 N -0.117 5.117 29 H 0.248 0.752 30 C -0.047 4.047 31 H 0.084 0.916 32 H 0.204 0.796 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.171 0.829 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.156 0.844 43 H 0.163 0.837 44 H 0.156 0.844 45 H 0.154 0.846 46 H 0.181 0.819 47 H 0.086 0.914 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 28.980 -8.400 5.871 30.739 hybrid contribution 0.421 1.406 0.555 1.569 sum 29.401 -6.994 6.426 30.897 Atomic orbital electron populations 1.69617 1.05640 1.27531 1.49302 1.25032 0.95493 0.97983 0.97578 0.86685 0.79829 0.84024 0.78970 1.19553 1.20119 1.19474 1.19427 0.79214 0.96635 1.48124 0.86262 1.42212 1.07563 1.06191 1.66919 1.19665 0.88094 0.84583 0.84086 1.90561 1.69419 1.30913 1.53887 1.21779 0.95147 0.90342 1.01450 1.60245 1.04656 1.12739 1.51077 1.21955 0.88299 0.99038 0.94202 0.90138 1.21497 0.93714 0.96842 1.02536 1.21871 0.96666 1.02848 0.96004 1.21742 0.98737 0.87502 0.93705 1.48195 1.06721 1.22622 1.56692 1.17372 0.87607 0.83454 0.78532 1.90957 1.76615 1.25386 1.47902 1.22053 0.94630 1.08399 1.01484 1.20726 0.99418 0.90098 0.90086 1.18111 0.87889 1.03960 1.00170 1.21313 1.00710 0.99559 0.96265 1.20777 0.95644 1.03912 1.03033 1.21978 1.00982 0.96811 0.92254 1.42135 1.14952 1.31103 1.23550 0.75191 1.22549 0.79691 1.03431 0.99011 0.91592 0.79647 0.93593 0.89418 0.82884 0.91563 0.90406 0.90210 0.91407 0.89543 0.91194 0.84351 0.83707 0.84364 0.84558 0.81927 0.91360 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.03 13.96 55.50 0.77 -25.25 16 2 C 0.04 1.17 5.50 -17.47 -0.10 1.08 16 3 Si 0.88 19.86 27.74 -169.99 -4.71 15.14 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.63 6.52 56.52 0.37 -5.27 16 7 C -0.31 -8.77 10.16 -14.94 -0.15 -8.92 16 8 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 9 N -0.59 -14.36 5.09 -10.97 -0.06 -14.41 16 10 C 0.45 10.36 7.82 -10.99 -0.09 10.27 16 11 O -0.57 -15.24 15.78 5.55 0.09 -15.16 16 12 C 0.05 0.77 5.97 -4.98 -0.03 0.74 16 13 N -0.66 -9.89 5.88 -107.87 -0.63 -10.52 16 14 C 0.08 0.88 2.62 -67.60 -0.18 0.70 16 15 H 0.08 1.00 7.80 -51.93 -0.41 0.59 16 16 C -0.11 -1.00 5.49 -26.69 -0.15 -1.14 16 17 C -0.14 -0.89 6.06 -26.84 -0.16 -1.05 16 18 C 0.11 0.65 6.27 -3.94 -0.02 0.63 16 19 N -0.61 -5.57 2.98 -176.47 -0.53 -6.10 16 20 C 0.54 5.82 5.55 -15.01 -0.08 5.74 16 21 O -0.53 -7.89 13.46 5.11 0.07 -7.82 16 22 C -0.24 -1.92 8.77 -39.27 -0.34 -2.26 16 23 C 0.02 0.13 9.93 -39.21 -0.39 -0.26 16 24 C 0.01 0.10 5.49 -83.91 -0.46 -0.36 16 25 C -0.15 -1.57 10.86 -38.98 -0.42 -1.99 16 26 C -0.21 -2.16 10.81 -39.98 -0.43 -2.59 16 27 C 0.02 0.16 11.90 -16.79 -0.20 -0.04 16 28 N -0.52 -5.52 4.42 -10.56 -0.05 -5.57 16 29 H 0.41 4.09 7.31 -40.82 -0.30 3.79 16 30 C 0.08 0.84 5.70 -3.71 -0.02 0.82 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.37 8.04 5.76 -40.82 -0.24 7.80 16 33 H 0.05 0.72 7.56 -51.93 -0.39 0.33 16 34 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 35 H 0.35 5.42 8.11 -39.29 -0.32 5.10 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.37 5.61 -51.93 -0.29 0.08 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.14 0.68 6.49 -52.49 -0.34 0.34 16 43 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 47 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 48 H 0.09 1.22 6.47 -51.93 -0.34 0.88 16 LS Contribution 388.79 15.07 5.86 5.86 Total: -1.00 -36.13 388.79 -9.23 -45.36 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -6.82 Total: 17.11 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -3.23 Total: 1.37 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.49 Total: -61.86 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: 0.16 Total: -22.98 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.71 Total: 15.14 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.13 -9.23 -45.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207892659.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.214 kcal (2) G-P(sol) polarization free energy of solvation -36.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds