Wall clock time and date at job start Sat Apr 11 2020 07:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 119.99980 * 2 1 4 4 H 1.48504 * 109.46856 * 270.00285 * 3 2 1 5 5 H 1.48501 * 109.47151 * 29.99797 * 3 2 1 6 6 H 1.48500 * 109.47444 * 150.00213 * 3 2 1 7 7 C 1.38945 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00287 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99761 * 179.97438 * 7 2 1 10 10 C 1.34782 * 119.99850 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00161 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99812 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46733 * 180.02562 * 12 10 9 14 14 C 1.46904 * 110.99644 * 179.97438 * 13 12 10 15 15 H 1.09009 * 109.49958 * 35.00477 * 14 13 12 16 16 C 1.53046 * 109.52255 * 155.07983 * 14 13 12 17 17 C 1.53039 * 109.53529 * 181.33454 * 16 14 13 18 18 C 1.53191 * 109.31617 * 298.63501 * 17 16 14 19 19 N 1.46921 * 108.77271 * 54.63681 * 18 17 16 20 20 C 1.34774 * 120.63026 * 126.37082 * 19 18 17 21 21 O 1.21789 * 120.00042 * 174.90084 * 20 19 18 22 22 C 1.41517 * 120.00143 * 354.90536 * 20 19 18 23 23 C 1.35620 * 120.00098 * 185.29832 * 22 20 19 24 24 C 1.41674 * 119.99715 * 179.97438 * 23 22 20 25 25 C 1.38281 * 126.25577 * 179.97438 * 24 23 22 26 26 C 1.39793 * 107.07711 * 179.97438 * 25 24 23 27 27 C 1.35503 * 107.90804 * 359.97438 * 26 25 24 28 28 N 1.35751 * 108.91221 * 359.76877 * 27 26 25 29 29 H 0.97000 * 125.69644 * 180.22769 * 28 27 26 30 30 C 1.46933 * 118.74189 * 306.39381 * 19 18 17 31 31 H 0.97005 * 119.99946 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00612 * 0.02562 * 9 7 2 33 33 H 1.09006 * 109.46973 * 60.00454 * 12 10 9 34 34 H 1.08994 * 109.47776 * 300.00538 * 12 10 9 35 35 H 1.00894 * 111.00523 * 303.95316 * 13 12 10 36 36 H 1.08998 * 109.46097 * 301.35688 * 16 14 13 37 37 H 1.09002 * 109.45742 * 61.31785 * 16 14 13 38 38 H 1.09002 * 109.49356 * 178.68983 * 17 16 14 39 39 H 1.08993 * 109.49719 * 58.59360 * 17 16 14 40 40 H 1.09003 * 109.58414 * 294.85354 * 18 17 16 41 41 H 1.08992 * 109.59098 * 174.42731 * 18 17 16 42 42 H 1.08001 * 119.99620 * 5.28745 * 22 20 19 43 43 H 1.07997 * 119.99909 * 359.97438 * 23 22 20 44 44 H 1.07998 * 126.46431 * 359.97438 * 25 24 23 45 45 H 1.07989 * 126.04598 * 180.02562 * 26 25 24 46 46 H 1.08000 * 125.54308 * 180.02562 * 27 26 25 47 47 H 1.09004 * 109.58184 * 293.81934 * 30 19 18 48 48 H 1.08999 * 109.58538 * 173.39855 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0020 12 6 5.5608 -2.3705 -0.0001 13 7 6.0504 -3.7555 0.0007 14 6 7.5189 -3.7947 -0.0010 15 1 7.9058 -2.9624 0.5872 16 6 7.9960 -5.1154 0.6076 17 6 9.5259 -5.1424 0.6365 18 6 10.0615 -5.0486 -0.7957 19 7 9.4911 -3.8560 -1.4366 20 6 10.2913 -2.9355 -2.0099 21 8 9.8044 -1.9995 -2.6184 22 6 11.6974 -3.0564 -1.9050 23 6 12.5003 -2.0759 -2.3879 24 6 13.9079 -2.1968 -2.2824 25 6 14.8431 -1.2810 -2.7283 26 6 16.1044 -1.7994 -2.4206 27 6 15.9254 -2.9938 -1.8063 28 7 14.5947 -3.2446 -1.7111 29 1 14.1944 -4.0319 -1.3100 30 6 8.0317 -3.6856 -1.4403 31 1 -0.4850 0.8401 0.0004 32 1 3.8649 -0.3633 -0.0004 33 1 5.9248 -1.8555 0.8890 34 1 5.9235 -1.8578 -0.8909 35 1 5.6755 -4.2711 0.7828 36 1 7.6119 -5.2068 1.6236 37 1 7.6295 -5.9463 0.0049 38 1 9.8647 -6.0733 1.0913 39 1 9.8937 -4.2975 1.2186 40 1 9.7697 -5.9383 -1.3539 41 1 11.1482 -4.9679 -0.7749 42 1 12.1310 -3.9296 -1.4402 43 1 12.0666 -1.2029 -2.8529 44 1 14.6378 -0.3423 -3.2213 45 1 17.0534 -1.3304 -2.6340 46 1 16.7133 -3.6392 -1.4468 47 1 7.5745 -4.4641 -2.0511 48 1 7.7793 -2.7054 -1.8449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207892660.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:57 Heat of formation + Delta-G solvation = 7.207368 kcal Electronic energy + Delta-G solvation = -29155.710837 eV Core-core repulsion = 25019.062160 eV Total energy + Delta-G solvation = -4136.648678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.61011 -40.50085 -38.61579 -37.79621 -35.20078 -34.25328 -33.86784 -32.53499 -31.63077 -31.57662 -30.33681 -28.86223 -26.59256 -25.89208 -24.06626 -23.58963 -22.34353 -21.36165 -20.81414 -20.35259 -19.33089 -18.93417 -18.36278 -18.27966 -17.13343 -16.37643 -15.98269 -15.46833 -15.31263 -15.07775 -14.77157 -14.59885 -14.57338 -14.45870 -14.29572 -13.93638 -13.89094 -13.45150 -13.18902 -12.96864 -12.88467 -12.81489 -12.63899 -12.40543 -12.36899 -12.10553 -11.91681 -11.52602 -11.25886 -11.18439 -11.11305 -10.71456 -10.59109 -10.55809 -10.03622 -9.94545 -9.54169 -9.47204 -8.90511 -8.55293 -8.20349 -8.14277 -8.09944 -6.28390 -3.79663 0.27061 2.05397 2.56299 2.69540 2.80904 3.06400 3.11396 3.18625 3.25324 3.76686 4.02505 4.13752 4.31269 4.34228 4.56846 4.57487 4.60169 4.68198 4.78860 4.85578 4.89480 5.02454 5.05458 5.09336 5.18996 5.24824 5.33266 5.44244 5.49163 5.55791 5.58075 5.64638 5.71406 5.77220 5.82310 5.85493 5.89520 5.94266 5.99196 6.10595 6.31451 6.40455 6.51185 6.94297 7.08700 7.23614 7.55414 7.61160 8.03235 8.17166 8.62597 8.97618 9.45450 9.85493 10.84651 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.001943 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.174596 B =14407.122352 C =15901.176883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.451 3.549 11 O -0.565 6.565 12 C 0.047 3.953 13 N -0.661 5.661 14 C 0.075 3.925 15 H 0.045 0.955 16 C -0.122 4.122 17 C -0.132 4.132 18 C 0.106 3.894 19 N -0.610 5.610 20 C 0.554 3.446 21 O -0.547 6.547 22 C -0.251 4.251 23 C 0.031 3.969 24 C 0.002 3.998 25 C -0.139 4.139 26 C -0.208 4.208 27 C 0.015 3.985 28 N -0.545 5.545 29 H 0.416 0.584 30 C 0.122 3.878 31 H 0.273 0.727 32 H 0.371 0.629 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.355 0.645 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.141 0.859 46 H 0.169 0.831 47 H 0.078 0.922 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.446 -8.104 -0.390 36.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.237 3.763 11 O -0.447 6.447 12 C -0.086 4.086 13 N -0.295 5.295 14 C -0.036 4.036 15 H 0.063 0.937 16 C -0.160 4.160 17 C -0.171 4.171 18 C -0.017 4.017 19 N -0.343 5.343 20 C 0.346 3.654 21 O -0.427 6.427 22 C -0.273 4.273 23 C 0.010 3.990 24 C -0.108 4.108 25 C -0.165 4.165 26 C -0.232 4.232 27 C -0.120 4.120 28 N -0.139 5.139 29 H 0.253 0.747 30 C -0.001 4.001 31 H 0.084 0.916 32 H 0.203 0.797 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.175 0.825 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.136 0.864 43 H 0.168 0.832 44 H 0.163 0.837 45 H 0.159 0.841 46 H 0.186 0.814 47 H 0.096 0.904 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 34.393 -8.413 -1.316 35.432 hybrid contribution 0.644 1.183 1.248 1.836 sum 35.037 -7.230 -0.068 35.776 Atomic orbital electron populations 1.69627 1.05627 1.27475 1.49418 1.25034 0.95498 0.97976 0.97624 0.86678 0.79734 0.84014 0.79019 1.19506 1.20192 1.19529 1.19431 0.79237 0.96633 1.48049 0.86267 1.42211 1.07545 1.06191 1.67021 1.19674 0.88114 0.84568 0.83979 1.90558 1.69425 1.30917 1.53810 1.21791 0.95088 0.90299 1.01426 1.59925 1.05009 1.12966 1.51601 1.21816 0.88630 0.97180 0.95932 0.93667 1.21711 0.94943 0.97907 1.01478 1.21907 0.96203 1.02670 0.96321 1.21816 0.98405 0.87995 0.93513 1.47986 1.07313 1.22301 1.56704 1.16909 0.87325 0.81998 0.79141 1.90858 1.77083 1.32672 1.42127 1.21826 0.93955 1.01923 1.09616 1.20890 0.89072 0.98036 0.90969 1.18300 0.92111 0.91870 1.08504 1.21591 0.91913 0.99576 1.03385 1.20927 0.98379 0.96858 1.07031 1.22092 0.84796 0.99761 1.05327 1.42184 1.06659 1.18780 1.46295 0.74654 1.21600 0.77715 1.04218 0.96574 0.91635 0.79656 0.93712 0.89354 0.82456 0.91361 0.90441 0.90360 0.91480 0.90969 0.89967 0.86430 0.83162 0.83657 0.84084 0.81378 0.90386 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.14 13.96 55.50 0.77 -25.37 16 2 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 3 Si 0.88 19.94 27.74 -169.99 -4.71 15.22 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.62 6.52 56.52 0.37 -5.25 16 7 C -0.30 -8.80 10.16 -14.93 -0.15 -8.96 16 8 H 0.12 3.91 7.39 -52.49 -0.39 3.53 16 9 N -0.59 -14.48 5.09 -10.97 -0.06 -14.54 16 10 C 0.45 10.49 7.82 -10.98 -0.09 10.40 16 11 O -0.57 -15.36 15.78 5.55 0.09 -15.27 16 12 C 0.05 0.81 5.97 -4.97 -0.03 0.78 16 13 N -0.66 -10.26 5.93 -107.86 -0.64 -10.90 16 14 C 0.08 0.91 2.64 -67.59 -0.18 0.73 16 15 H 0.05 0.57 7.80 -51.92 -0.41 0.16 16 16 C -0.12 -1.12 5.17 -26.69 -0.14 -1.26 16 17 C -0.13 -0.88 6.08 -26.61 -0.16 -1.04 16 18 C 0.11 0.72 6.33 -3.71 -0.02 0.70 16 19 N -0.61 -6.51 2.97 -176.21 -0.52 -7.03 16 20 C 0.55 6.72 7.45 -15.01 -0.11 6.61 16 21 O -0.55 -8.85 15.56 5.11 0.08 -8.77 16 22 C -0.25 -2.15 8.80 -39.27 -0.35 -2.50 16 23 C 0.03 0.26 9.40 -39.21 -0.37 -0.11 16 24 C 0.00 0.01 6.74 -83.90 -0.57 -0.55 16 25 C -0.14 -1.01 10.86 -38.98 -0.42 -1.44 16 26 C -0.21 -1.26 10.81 -39.98 -0.43 -1.69 16 27 C 0.02 0.07 11.90 -16.79 -0.20 -0.13 16 28 N -0.54 -2.80 5.94 -10.56 -0.06 -2.86 16 29 H 0.42 1.09 7.87 -40.82 -0.32 0.77 16 30 C 0.12 1.56 5.89 -3.71 -0.02 1.54 16 31 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.37 8.08 5.76 -40.82 -0.24 7.85 16 33 H 0.04 0.69 8.06 -51.93 -0.42 0.27 16 34 H 0.09 1.45 7.56 -51.93 -0.39 1.06 16 35 H 0.35 5.56 8.04 -39.29 -0.32 5.25 16 36 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.37 5.29 -51.93 -0.27 0.09 16 42 H 0.12 0.64 4.61 -52.49 -0.24 0.39 16 43 H 0.15 1.39 7.47 -52.49 -0.39 1.00 16 44 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 46 H 0.17 0.26 8.06 -52.49 -0.42 -0.16 16 47 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.09 1.41 6.51 -51.93 -0.34 1.07 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -36.81 392.86 -9.16 -45.97 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -6.69 Total: 13.46 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -3.33 Total: 4.16 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.51 Total: -60.69 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.17 Total: -24.04 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.71 Total: 15.22 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.81 -9.16 -45.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207892660.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.177 kcal (2) G-P(sol) polarization free energy of solvation -36.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds