Wall clock time and date at job start Sat Apr 11 2020 07:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 119.99980 * 2 1 4 4 H 1.48504 * 109.46856 * 270.00285 * 3 2 1 5 5 H 1.48501 * 109.47151 * 29.99797 * 3 2 1 6 6 H 1.48500 * 109.47444 * 150.00213 * 3 2 1 7 7 C 1.38945 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00287 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99761 * 179.97438 * 7 2 1 10 10 C 1.34782 * 119.99850 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00161 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99812 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46733 * 180.02562 * 12 10 9 14 14 C 1.46904 * 110.99644 * 179.97438 * 13 12 10 15 15 H 1.09009 * 109.49958 * 35.00477 * 14 13 12 16 16 C 1.53046 * 109.52255 * 155.07983 * 14 13 12 17 17 C 1.53039 * 109.53529 * 181.33454 * 16 14 13 18 18 C 1.53191 * 109.31617 * 298.63501 * 17 16 14 19 19 N 1.46921 * 108.77271 * 54.63681 * 18 17 16 20 20 C 1.34774 * 120.63026 * 126.37082 * 19 18 17 21 21 O 1.21789 * 120.00042 * 174.90084 * 20 19 18 22 22 C 1.41517 * 120.00143 * 354.90536 * 20 19 18 23 23 C 1.35620 * 120.00098 * 185.29832 * 22 20 19 24 24 C 1.41674 * 119.99715 * 179.97438 * 23 22 20 25 25 C 1.38281 * 126.25577 * 179.97438 * 24 23 22 26 26 C 1.39793 * 107.07711 * 179.97438 * 25 24 23 27 27 C 1.35503 * 107.90804 * 359.97438 * 26 25 24 28 28 N 1.35751 * 108.91221 * 359.76877 * 27 26 25 29 29 H 0.97000 * 125.69644 * 180.22769 * 28 27 26 30 30 C 1.46933 * 118.74189 * 306.39381 * 19 18 17 31 31 H 0.97005 * 119.99946 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00612 * 0.02562 * 9 7 2 33 33 H 1.09006 * 109.46973 * 60.00454 * 12 10 9 34 34 H 1.08994 * 109.47776 * 300.00538 * 12 10 9 35 35 H 1.00894 * 111.00523 * 303.95316 * 13 12 10 36 36 H 1.08998 * 109.46097 * 301.35688 * 16 14 13 37 37 H 1.09002 * 109.45742 * 61.31785 * 16 14 13 38 38 H 1.09002 * 109.49356 * 178.68983 * 17 16 14 39 39 H 1.08993 * 109.49719 * 58.59360 * 17 16 14 40 40 H 1.09003 * 109.58414 * 294.85354 * 18 17 16 41 41 H 1.08992 * 109.59098 * 174.42731 * 18 17 16 42 42 H 1.08001 * 119.99620 * 5.28745 * 22 20 19 43 43 H 1.07997 * 119.99909 * 359.97438 * 23 22 20 44 44 H 1.07998 * 126.46431 * 359.97438 * 25 24 23 45 45 H 1.07989 * 126.04598 * 180.02562 * 26 25 24 46 46 H 1.08000 * 125.54308 * 180.02562 * 27 26 25 47 47 H 1.09004 * 109.58184 * 293.81934 * 30 19 18 48 48 H 1.08999 * 109.58538 * 173.39855 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0020 12 6 5.5608 -2.3705 -0.0001 13 7 6.0504 -3.7555 0.0007 14 6 7.5189 -3.7947 -0.0010 15 1 7.9058 -2.9624 0.5872 16 6 7.9960 -5.1154 0.6076 17 6 9.5259 -5.1424 0.6365 18 6 10.0615 -5.0486 -0.7957 19 7 9.4911 -3.8560 -1.4366 20 6 10.2913 -2.9355 -2.0099 21 8 9.8044 -1.9995 -2.6184 22 6 11.6974 -3.0564 -1.9050 23 6 12.5003 -2.0759 -2.3879 24 6 13.9079 -2.1968 -2.2824 25 6 14.8431 -1.2810 -2.7283 26 6 16.1044 -1.7994 -2.4206 27 6 15.9254 -2.9938 -1.8063 28 7 14.5947 -3.2446 -1.7111 29 1 14.1944 -4.0319 -1.3100 30 6 8.0317 -3.6856 -1.4403 31 1 -0.4850 0.8401 0.0004 32 1 3.8649 -0.3633 -0.0004 33 1 5.9248 -1.8555 0.8890 34 1 5.9235 -1.8578 -0.8909 35 1 5.6755 -4.2711 0.7828 36 1 7.6119 -5.2068 1.6236 37 1 7.6295 -5.9463 0.0049 38 1 9.8647 -6.0733 1.0913 39 1 9.8937 -4.2975 1.2186 40 1 9.7697 -5.9383 -1.3539 41 1 11.1482 -4.9679 -0.7749 42 1 12.1310 -3.9296 -1.4402 43 1 12.0666 -1.2029 -2.8529 44 1 14.6378 -0.3423 -3.2213 45 1 17.0534 -1.3304 -2.6340 46 1 16.7133 -3.6392 -1.4468 47 1 7.5745 -4.4641 -2.0511 48 1 7.7793 -2.7054 -1.8449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207892660.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:56 Heat of formation + Delta-G solvation = -21.199561 kcal Electronic energy + Delta-G solvation = -29156.942654 eV Core-core repulsion = 25019.062160 eV Total energy + Delta-G solvation = -4137.880494 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.06387 -41.34086 -40.35401 -38.89119 -36.44081 -35.83740 -34.89129 -33.79494 -33.33972 -32.00481 -31.32500 -29.55096 -28.07654 -26.72881 -25.67794 -24.30982 -23.23126 -21.95487 -21.38774 -21.27981 -21.02595 -20.26757 -19.62911 -18.98505 -17.98085 -17.60914 -17.24168 -16.89756 -16.49310 -16.26703 -15.98589 -15.67355 -15.28587 -15.20893 -15.13888 -15.01187 -14.81105 -14.53796 -14.44502 -14.19797 -14.08548 -13.88375 -13.63900 -13.31665 -13.25052 -13.18364 -12.98690 -12.88762 -12.48826 -12.44546 -12.01170 -11.96144 -11.86183 -11.55661 -11.48686 -11.32290 -10.93481 -10.48889 -10.28165 -9.89808 -9.78284 -9.40843 -8.60735 -8.44442 -6.05136 -0.35121 1.27423 1.32682 1.40752 1.54919 1.89677 1.97000 2.03417 2.19536 2.34582 2.52536 2.68226 3.11351 3.32931 3.60224 3.78723 3.86167 3.89438 4.06324 4.10659 4.12628 4.26858 4.32290 4.36383 4.38358 4.43882 4.44467 4.51221 4.57960 4.65004 4.75674 4.85309 4.92813 4.98385 5.02252 5.11884 5.15491 5.30351 5.36214 5.36822 5.47465 5.52056 5.87127 5.93171 5.98866 6.05668 6.32965 6.44352 6.55725 6.65158 6.83781 7.16902 7.35227 7.90382 8.72937 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.001943 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.174596 B =14407.122352 C =15901.176883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.961 3.039 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.235 1.235 7 C -0.330 4.330 8 H 0.058 0.942 9 N -0.591 5.591 10 C 0.451 3.549 11 O -0.610 6.610 12 C 0.062 3.938 13 N -0.676 5.676 14 C 0.082 3.918 15 H 0.046 0.954 16 C -0.120 4.120 17 C -0.124 4.124 18 C 0.098 3.902 19 N -0.607 5.607 20 C 0.545 3.455 21 O -0.603 6.603 22 C -0.260 4.260 23 C 0.040 3.960 24 C -0.023 4.023 25 C -0.153 4.153 26 C -0.231 4.231 27 C 0.035 3.965 28 N -0.536 5.536 29 H 0.429 0.571 30 C 0.125 3.875 31 H 0.280 0.720 32 H 0.388 0.612 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.353 0.647 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.154 0.846 43 H 0.132 0.868 44 H 0.146 0.854 45 H 0.154 0.846 46 H 0.206 0.794 47 H 0.068 0.932 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 40.327 -8.266 0.903 41.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.211 4.211 3 Si 0.781 3.219 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.158 1.158 7 C -0.459 4.459 8 H 0.077 0.923 9 N -0.233 5.233 10 C 0.239 3.761 11 O -0.494 6.494 12 C -0.071 4.071 13 N -0.310 5.310 14 C -0.028 4.028 15 H 0.064 0.936 16 C -0.158 4.158 17 C -0.162 4.162 18 C -0.023 4.023 19 N -0.339 5.339 20 C 0.340 3.660 21 O -0.487 6.487 22 C -0.281 4.281 23 C 0.019 3.981 24 C -0.132 4.132 25 C -0.179 4.179 26 C -0.255 4.255 27 C -0.101 4.101 28 N -0.131 5.131 29 H 0.269 0.731 30 C 0.001 3.999 31 H 0.089 0.911 32 H 0.224 0.776 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.174 0.826 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.131 0.869 42 H 0.171 0.829 43 H 0.149 0.851 44 H 0.164 0.836 45 H 0.172 0.828 46 H 0.223 0.777 47 H 0.087 0.913 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 39.300 -8.630 0.005 40.236 hybrid contribution -0.815 1.113 0.803 1.596 sum 38.485 -7.517 0.808 39.221 Atomic orbital electron populations 1.69795 1.07962 1.29254 1.50109 1.26059 0.96466 1.02506 0.96048 0.85416 0.79449 0.77112 0.79898 1.18414 1.19555 1.15842 1.19026 0.81336 0.95067 1.50439 0.92340 1.42056 1.05966 1.07548 1.67681 1.20821 0.90645 0.83400 0.81282 1.90533 1.71225 1.32573 1.55083 1.21650 0.90004 0.92098 1.03299 1.59888 1.07391 1.11837 1.51868 1.21830 0.86210 0.99183 0.95563 0.93561 1.21722 0.97068 0.95676 1.01328 1.21892 0.93811 1.04293 0.96213 1.22165 1.00139 0.86527 0.93438 1.48067 1.06169 1.23226 1.56423 1.17501 0.88773 0.81350 0.78360 1.90826 1.78142 1.35000 1.44766 1.21765 0.91744 1.03464 1.11150 1.20816 0.89919 0.97341 0.89977 1.18154 0.91507 0.93206 1.10361 1.21882 0.92890 0.99860 1.03236 1.21237 0.98420 0.97857 1.07963 1.22720 0.85184 0.99300 1.02912 1.42206 1.06756 1.18595 1.45581 0.73068 1.21380 0.79549 1.02187 0.96814 0.91062 0.77645 0.90760 0.88178 0.82633 0.90765 0.90753 0.87296 0.91439 0.90009 0.86888 0.82920 0.85067 0.83632 0.82817 0.77724 0.91323 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.11 13.96 21.66 0.30 -56.81 16 2 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 3 Si 0.96 40.56 27.74 68.60 1.90 42.46 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.23 -8.53 6.52 99.48 0.65 -7.88 16 7 C -0.33 -19.89 10.16 84.04 0.85 -19.03 16 8 H 0.06 4.16 7.39 -2.91 -0.02 4.13 16 9 N -0.59 -29.29 5.09 -306.99 -1.56 -30.85 16 10 C 0.45 21.34 7.82 87.66 0.69 22.03 16 11 O -0.61 -34.60 15.78 -3.05 -0.05 -34.65 16 12 C 0.06 2.10 5.97 85.56 0.51 2.61 16 13 N -0.68 -20.73 5.93 -495.15 -2.94 -23.67 16 14 C 0.08 1.90 2.64 44.99 0.12 2.02 16 15 H 0.05 1.08 7.80 -2.38 -0.02 1.06 16 16 C -0.12 -1.92 5.17 30.62 0.16 -1.76 16 17 C -0.12 -1.18 6.08 30.67 0.19 -0.99 16 18 C 0.10 1.02 6.33 86.36 0.55 1.57 16 19 N -0.61 -12.24 2.97 -829.59 -2.47 -14.71 16 20 C 0.55 13.07 7.45 85.05 0.63 13.70 16 21 O -0.60 -20.37 15.56 -4.63 -0.07 -20.44 16 22 C -0.26 -4.04 8.80 22.47 0.20 -3.85 16 23 C 0.04 0.67 9.40 22.51 0.21 0.88 16 24 C -0.02 -0.30 6.74 39.08 0.26 -0.04 16 25 C -0.15 -2.06 10.86 22.66 0.25 -1.82 16 26 C -0.23 -2.26 10.81 22.01 0.24 -2.02 16 27 C 0.04 0.20 11.90 83.45 0.99 1.19 16 28 N -0.54 -3.72 5.94 -187.33 -1.11 -4.84 16 29 H 0.43 0.46 7.87 -92.71 -0.73 -0.27 16 30 C 0.12 3.19 5.89 86.36 0.51 3.70 16 31 H 0.28 15.67 8.31 -92.70 -0.77 14.90 16 32 H 0.39 16.32 5.76 -92.71 -0.53 15.78 16 33 H 0.07 2.12 8.06 -2.38 -0.02 2.10 16 34 H 0.10 3.21 7.56 -2.39 -0.02 3.19 16 35 H 0.35 10.99 8.04 -89.70 -0.72 10.27 16 36 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.11 0.48 5.29 -2.39 -0.01 0.47 16 42 H 0.15 1.09 4.61 -2.91 -0.01 1.08 16 43 H 0.13 2.61 7.47 -2.91 -0.02 2.59 16 44 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 45 H 0.15 0.99 8.06 -2.92 -0.02 0.97 16 46 H 0.21 -0.43 8.06 -2.91 -0.02 -0.45 16 47 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 48 H 0.06 1.97 6.51 -2.39 -0.02 1.96 16 Total: -1.00 -87.96 392.86 -0.20 -88.16 By element: Atomic # 1 Polarization: 38.39 SS G_CDS: -1.02 Total: 37.37 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 6.82 Total: 17.98 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -7.78 Total: -130.88 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: -0.12 Total: -55.09 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.90 Total: 42.46 kcal Total: -87.96 -0.20 -88.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207892660.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.961 kcal (2) G-P(sol) polarization free energy of solvation -87.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds