Wall clock time and date at job start Sat Apr 11 2020 07:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00519 * 2 1 4 4 H 1.48501 * 109.47089 * 269.99958 * 3 2 1 5 5 H 1.48501 * 109.47034 * 29.99603 * 3 2 1 6 6 H 1.48494 * 109.47365 * 149.99740 * 3 2 1 7 7 C 1.38822 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00141 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99690 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00021 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.49231 * 34.93697 * 10 9 7 12 12 C 1.53042 * 109.49720 * 155.00021 * 10 9 7 13 13 C 1.53045 * 109.52272 * 181.35687 * 12 10 9 14 14 C 1.53187 * 109.31372 * 298.61298 * 13 12 10 15 15 N 1.46931 * 108.76598 * 54.65894 * 14 13 12 16 16 C 1.34773 * 120.62937 * 126.39806 * 15 14 13 17 17 O 1.21291 * 119.99779 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00592 * 359.97438 * 16 15 14 19 19 N 1.46500 * 109.47555 * 179.97438 * 18 16 15 20 20 C 1.34771 * 119.99918 * 180.02562 * 19 18 16 21 21 O 1.21585 * 120.00225 * 359.97438 * 20 19 18 22 22 N 1.34777 * 119.99680 * 180.02562 * 20 19 18 23 23 C 1.39952 * 119.99868 * 175.37824 * 22 20 19 24 24 C 1.38867 * 120.06815 * 214.80821 * 23 22 20 25 25 C 1.38118 * 119.92457 * 179.76721 * 24 23 22 26 26 C 1.38275 * 120.07065 * 0.51157 * 25 24 23 27 27 C 1.38278 * 120.14244 * 359.74758 * 26 25 24 28 28 C 1.38119 * 120.07004 * 359.97438 * 27 26 25 29 29 C 1.46921 * 118.73704 * 306.38354 * 15 14 13 30 30 H 0.96996 * 119.99778 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00239 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.46265 * 301.36876 * 12 10 9 33 33 H 1.09001 * 109.45738 * 61.34864 * 12 10 9 34 34 H 1.09000 * 109.49998 * 58.58265 * 13 12 10 35 35 H 1.09004 * 109.49397 * 178.68175 * 13 12 10 36 36 H 1.08995 * 109.60264 * 294.87266 * 14 13 12 37 37 H 1.09002 * 109.70512 * 174.50732 * 14 13 12 38 38 H 1.09003 * 109.46864 * 300.00221 * 18 16 15 39 39 H 1.09000 * 109.46664 * 59.99435 * 18 16 15 40 40 H 0.96998 * 119.99850 * 0.02562 * 19 18 16 41 41 H 0.96994 * 120.00156 * 355.37141 * 22 20 19 42 42 H 1.08002 * 120.03422 * 0.02562 * 24 23 22 43 43 H 1.07995 * 119.95843 * 180.25340 * 25 24 23 44 44 H 1.08001 * 119.92865 * 179.76551 * 26 25 24 45 45 H 1.07999 * 119.97019 * 180.02562 * 27 26 25 46 46 H 1.08002 * 120.03543 * 180.02562 * 28 27 26 47 47 H 1.08995 * 109.58841 * 293.81473 * 29 15 14 48 48 H 1.09003 * 109.70346 * 173.45854 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5477 1.4400 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 1.4701 -2.1376 0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4711 0.0000 11 1 3.5641 -3.2074 -0.5881 12 6 5.4995 -2.2598 -0.6103 13 6 6.2527 -3.5918 -0.6416 14 6 6.4279 -4.1085 0.7898 15 7 5.1085 -4.1767 1.4327 16 6 4.6822 -5.3194 2.0060 17 8 3.5911 -5.3628 2.5339 18 6 5.5613 -6.5434 1.9914 19 7 4.8768 -7.6445 2.6735 20 6 5.4771 -8.8461 2.7835 21 8 6.5866 -9.0165 2.3162 22 7 4.8472 -9.8592 3.4106 23 6 5.4276 -11.1324 3.4408 24 6 4.6249 -12.2644 3.3898 25 6 5.2012 -13.5194 3.4149 26 6 6.5751 -13.6493 3.5014 27 6 7.3768 -12.5240 3.5577 28 6 6.8071 -11.2662 3.5272 29 6 4.2627 -2.9753 1.4387 30 1 -0.4849 0.8400 -0.0004 31 1 3.8646 -0.3623 -0.0004 32 1 5.3953 -1.8777 -1.6257 33 1 6.0559 -1.5422 -0.0074 34 1 5.6845 -4.3175 -1.2235 35 1 7.2318 -3.4454 -1.0977 36 1 7.0714 -3.4284 1.3479 37 1 6.8763 -5.1018 0.7697 38 1 5.7704 -6.8282 0.9602 39 1 6.4975 -6.3244 2.5048 40 1 3.9915 -7.5087 3.0460 41 1 3.9916 -9.7060 3.8410 42 1 3.5515 -12.1635 3.3264 43 1 4.5777 -14.4001 3.3712 44 1 7.0230 -14.6318 3.5247 45 1 8.4496 -12.6288 3.6247 46 1 7.4338 -10.3877 3.5707 47 1 4.7296 -2.2028 2.0497 48 1 3.2811 -3.2190 1.8451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208840796.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:07 Heat of formation + Delta-G solvation = -11.551623 kcal Electronic energy + Delta-G solvation = -29394.672991 eV Core-core repulsion = 25257.210863 eV Total energy + Delta-G solvation = -4137.462128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.03088 -40.14087 -38.85508 -37.58461 -35.11029 -34.75609 -34.68710 -32.46594 -31.41521 -31.16575 -30.19270 -29.11880 -27.57865 -24.97386 -23.87447 -23.21230 -22.67540 -21.83015 -21.10454 -20.53006 -19.40696 -18.72471 -18.00355 -17.61494 -16.85116 -16.56233 -16.29354 -15.98611 -15.42331 -15.21366 -14.90527 -14.58976 -14.39748 -14.36405 -14.16449 -14.13366 -13.65609 -13.46609 -13.34283 -13.07256 -12.99462 -12.66022 -12.58394 -12.39373 -12.01110 -11.70303 -11.55726 -11.28612 -10.98169 -10.80306 -10.75192 -10.72275 -10.36919 -10.34420 -9.96808 -9.88313 -9.63280 -9.50438 -9.19209 -9.17663 -8.54305 -8.39511 -7.35827 -5.82074 -3.19867 1.02311 1.14814 2.13505 2.51945 2.79331 3.02086 3.32698 3.35081 3.41532 3.57143 3.83890 4.27162 4.53337 4.61976 4.68859 4.70511 4.89452 4.91782 5.04624 5.08884 5.10445 5.13794 5.26040 5.27480 5.31943 5.38922 5.41492 5.63793 5.71421 5.73237 5.81180 5.92167 5.98244 5.99101 6.01527 6.07053 6.16797 6.23273 6.29283 6.31258 6.48992 6.58536 6.63797 6.78202 6.80872 7.40159 7.57030 7.92819 8.08569 8.16113 8.36449 9.13351 9.85008 10.03169 11.35805 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.001819 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.251353 B =15388.137079 C =16200.480042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.130 4.130 14 C 0.102 3.898 15 N -0.600 5.600 16 C 0.505 3.495 17 O -0.537 6.537 18 C 0.121 3.879 19 N -0.727 5.727 20 C 0.709 3.291 21 O -0.576 6.576 22 N -0.686 5.686 23 C 0.166 3.834 24 C -0.148 4.148 25 C -0.102 4.102 26 C -0.140 4.140 27 C -0.103 4.103 28 C -0.121 4.121 29 C 0.092 3.908 30 H 0.260 0.740 31 H 0.363 0.637 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.411 0.589 41 H 0.409 0.591 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.141 0.859 47 H 0.062 0.938 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.923 -22.812 6.401 29.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.384 5.384 10 C 0.062 3.938 11 H 0.078 0.922 12 C -0.169 4.169 13 C -0.169 4.169 14 C -0.021 4.021 15 N -0.334 5.334 16 C 0.292 3.708 17 O -0.415 6.415 18 C -0.007 4.007 19 N -0.386 5.386 20 C 0.409 3.591 21 O -0.453 6.453 22 N -0.334 5.334 23 C 0.071 3.929 24 C -0.169 4.169 25 C -0.121 4.121 26 C -0.159 4.159 27 C -0.122 4.122 28 C -0.141 4.141 29 C -0.032 4.032 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.248 0.752 41 H 0.245 0.755 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.142 0.858 46 H 0.159 0.841 47 H 0.081 0.919 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 17.042 -22.899 6.207 29.212 hybrid contribution -0.321 1.519 0.348 1.591 sum 16.721 -21.380 6.555 27.923 Atomic orbital electron populations 1.69704 1.05135 1.25919 1.56910 1.24692 0.95234 0.97243 1.01687 0.86548 0.79176 0.84967 0.77770 1.21036 1.21685 1.20330 1.19089 0.80361 0.94855 1.43673 0.89076 1.42728 1.04146 1.01700 1.89797 1.20466 0.91051 0.89578 0.92713 0.92185 1.21877 0.96641 0.96462 1.01905 1.21872 1.01029 0.98197 0.95770 1.21841 0.84083 1.02102 0.94048 1.48182 1.18313 1.11586 1.55276 1.20387 0.87179 0.84423 0.78853 1.90721 1.21750 1.83672 1.45311 1.20993 0.95368 0.84839 0.99541 1.44767 1.22444 1.09435 1.61910 1.15736 0.84224 0.80098 0.79033 1.90928 1.18656 1.82239 1.53503 1.42543 1.25320 1.07652 1.57849 1.17531 0.92514 0.83032 0.99831 1.20911 0.99717 0.91564 1.04721 1.20921 0.95050 0.96576 0.99531 1.21140 0.93826 0.98698 1.02209 1.21084 0.99966 0.91986 0.99119 1.21364 0.93697 0.98730 1.00299 1.22768 0.95625 0.83995 1.00833 0.92959 0.80426 0.91186 0.92061 0.91243 0.90653 0.90960 0.89905 0.88308 0.88448 0.75153 0.75492 0.85707 0.85743 0.86101 0.85802 0.84114 0.91941 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.95 13.97 55.49 0.78 -28.18 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 3 Si 0.89 21.60 27.73 -169.99 -4.71 16.88 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 7 C -0.25 -6.91 10.41 -15.06 -0.16 -7.07 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 N -0.74 -16.77 4.93 -53.30 -0.26 -17.03 16 10 C 0.17 3.12 2.92 -67.81 -0.20 2.92 16 11 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 12 C -0.13 -1.78 5.36 -26.69 -0.14 -1.92 16 13 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 14 C 0.10 0.98 6.34 -3.71 -0.02 0.96 16 15 N -0.60 -8.04 2.97 -172.77 -0.51 -8.56 16 16 C 0.51 6.95 7.77 -10.99 -0.09 6.87 16 17 O -0.54 -9.37 15.08 5.55 0.08 -9.29 16 18 C 0.12 1.27 4.50 -5.19 -0.02 1.25 16 19 N -0.73 -7.71 5.53 -66.42 -0.37 -8.08 16 20 C 0.71 8.06 8.41 -86.92 -0.73 7.33 16 21 O -0.58 -8.11 13.78 5.29 0.07 -8.04 16 22 N -0.69 -6.20 5.34 -14.22 -0.08 -6.27 16 23 C 0.17 1.62 6.30 -83.69 -0.53 1.09 16 24 C -0.15 -1.19 9.97 -39.39 -0.39 -1.58 16 25 C -0.10 -0.74 10.04 -39.61 -0.40 -1.14 16 26 C -0.14 -1.04 10.04 -39.55 -0.40 -1.43 16 27 C -0.10 -0.87 10.04 -39.61 -0.40 -1.27 16 28 C -0.12 -1.25 8.70 -39.39 -0.34 -1.59 16 29 C 0.09 1.58 6.01 -3.71 -0.02 1.56 16 30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.36 7.99 5.66 -40.82 -0.23 7.76 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.60 5.93 -51.93 -0.31 0.30 16 38 H 0.10 0.97 7.70 -51.93 -0.40 0.57 16 39 H 0.10 0.90 7.94 -51.93 -0.41 0.49 16 40 H 0.41 4.20 7.46 -40.82 -0.30 3.89 16 41 H 0.41 2.56 8.84 -40.82 -0.36 2.20 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.14 1.64 6.22 -52.49 -0.33 1.32 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.10 2.00 7.01 -51.93 -0.36 1.64 16 LS Contribution 390.75 15.07 5.89 5.89 Total: -1.00 -35.13 390.75 -10.16 -45.29 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -6.95 Total: 12.78 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -4.10 Total: 4.61 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: -0.44 Total: -68.12 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.16 Total: -17.33 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.13 -10.16 -45.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208840796.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.734 kcal (2) G-P(sol) polarization free energy of solvation -35.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds