Wall clock time and date at job start Sat Apr 11 2020 07:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00519 * 2 1 4 4 H 1.48501 * 109.47089 * 269.99958 * 3 2 1 5 5 H 1.48501 * 109.47034 * 29.99603 * 3 2 1 6 6 H 1.48494 * 109.47365 * 149.99740 * 3 2 1 7 7 C 1.38822 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00141 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99690 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00021 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.49231 * 34.93697 * 10 9 7 12 12 C 1.53042 * 109.49720 * 155.00021 * 10 9 7 13 13 C 1.53045 * 109.52272 * 181.35687 * 12 10 9 14 14 C 1.53187 * 109.31372 * 298.61298 * 13 12 10 15 15 N 1.46931 * 108.76598 * 54.65894 * 14 13 12 16 16 C 1.34773 * 120.62937 * 126.39806 * 15 14 13 17 17 O 1.21291 * 119.99779 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00592 * 359.97438 * 16 15 14 19 19 N 1.46500 * 109.47555 * 179.97438 * 18 16 15 20 20 C 1.34771 * 119.99918 * 180.02562 * 19 18 16 21 21 O 1.21585 * 120.00225 * 359.97438 * 20 19 18 22 22 N 1.34777 * 119.99680 * 180.02562 * 20 19 18 23 23 C 1.39952 * 119.99868 * 175.37824 * 22 20 19 24 24 C 1.38867 * 120.06815 * 214.80821 * 23 22 20 25 25 C 1.38118 * 119.92457 * 179.76721 * 24 23 22 26 26 C 1.38275 * 120.07065 * 0.51157 * 25 24 23 27 27 C 1.38278 * 120.14244 * 359.74758 * 26 25 24 28 28 C 1.38119 * 120.07004 * 359.97438 * 27 26 25 29 29 C 1.46921 * 118.73704 * 306.38354 * 15 14 13 30 30 H 0.96996 * 119.99778 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00239 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.46265 * 301.36876 * 12 10 9 33 33 H 1.09001 * 109.45738 * 61.34864 * 12 10 9 34 34 H 1.09000 * 109.49998 * 58.58265 * 13 12 10 35 35 H 1.09004 * 109.49397 * 178.68175 * 13 12 10 36 36 H 1.08995 * 109.60264 * 294.87266 * 14 13 12 37 37 H 1.09002 * 109.70512 * 174.50732 * 14 13 12 38 38 H 1.09003 * 109.46864 * 300.00221 * 18 16 15 39 39 H 1.09000 * 109.46664 * 59.99435 * 18 16 15 40 40 H 0.96998 * 119.99850 * 0.02562 * 19 18 16 41 41 H 0.96994 * 120.00156 * 355.37141 * 22 20 19 42 42 H 1.08002 * 120.03422 * 0.02562 * 24 23 22 43 43 H 1.07995 * 119.95843 * 180.25340 * 25 24 23 44 44 H 1.08001 * 119.92865 * 179.76551 * 26 25 24 45 45 H 1.07999 * 119.97019 * 180.02562 * 27 26 25 46 46 H 1.08002 * 120.03543 * 180.02562 * 28 27 26 47 47 H 1.08995 * 109.58841 * 293.81473 * 29 15 14 48 48 H 1.09003 * 109.70346 * 173.45854 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5477 1.4400 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 1.4701 -2.1376 0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4711 0.0000 11 1 3.5641 -3.2074 -0.5881 12 6 5.4995 -2.2598 -0.6103 13 6 6.2527 -3.5918 -0.6416 14 6 6.4279 -4.1085 0.7898 15 7 5.1085 -4.1767 1.4327 16 6 4.6822 -5.3194 2.0060 17 8 3.5911 -5.3628 2.5339 18 6 5.5613 -6.5434 1.9914 19 7 4.8768 -7.6445 2.6735 20 6 5.4771 -8.8461 2.7835 21 8 6.5866 -9.0165 2.3162 22 7 4.8472 -9.8592 3.4106 23 6 5.4276 -11.1324 3.4408 24 6 4.6249 -12.2644 3.3898 25 6 5.2012 -13.5194 3.4149 26 6 6.5751 -13.6493 3.5014 27 6 7.3768 -12.5240 3.5577 28 6 6.8071 -11.2662 3.5272 29 6 4.2627 -2.9753 1.4387 30 1 -0.4849 0.8400 -0.0004 31 1 3.8646 -0.3623 -0.0004 32 1 5.3953 -1.8777 -1.6257 33 1 6.0559 -1.5422 -0.0074 34 1 5.6845 -4.3175 -1.2235 35 1 7.2318 -3.4454 -1.0977 36 1 7.0714 -3.4284 1.3479 37 1 6.8763 -5.1018 0.7697 38 1 5.7704 -6.8282 0.9602 39 1 6.4975 -6.3244 2.5048 40 1 3.9915 -7.5087 3.0460 41 1 3.9916 -9.7060 3.8410 42 1 3.5515 -12.1635 3.3264 43 1 4.5777 -14.4001 3.3712 44 1 7.0230 -14.6318 3.5247 45 1 8.4496 -12.6288 3.6247 46 1 7.4338 -10.3877 3.5707 47 1 4.7296 -2.2028 2.0497 48 1 3.2811 -3.2190 1.8451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208840796.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:06 Heat of formation + Delta-G solvation = -37.352563 kcal Electronic energy + Delta-G solvation = -29395.791804 eV Core-core repulsion = 25257.210863 eV Total energy + Delta-G solvation = -4138.580941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.89393 -41.19043 -39.60052 -38.81494 -36.36372 -35.85555 -35.64865 -34.04453 -32.93421 -31.77743 -31.19167 -30.36011 -28.59574 -26.04730 -25.61367 -23.92519 -23.35624 -23.14070 -21.97717 -21.83169 -20.46165 -19.71479 -19.49404 -18.75084 -17.91392 -17.31881 -17.23923 -16.93757 -16.66388 -16.33981 -16.12344 -15.82695 -15.53175 -15.44020 -15.17552 -14.95782 -14.80450 -14.48793 -14.44720 -14.20929 -14.10243 -13.81083 -13.77976 -13.48870 -13.29456 -12.97595 -12.63183 -12.52870 -12.17445 -12.15806 -11.93234 -11.87584 -11.79334 -11.52924 -11.35903 -11.17108 -11.13519 -10.98841 -10.37491 -9.87785 -9.81778 -9.27955 -9.06840 -8.05104 -5.41094 0.38163 0.51892 1.29371 1.36692 1.41695 1.42974 1.48996 1.93295 2.00068 2.46685 2.93900 3.07411 3.25660 3.29876 3.52787 3.96165 4.03903 4.04335 4.09613 4.12878 4.24196 4.26130 4.29269 4.35826 4.36926 4.57119 4.60361 4.61953 4.67719 4.70269 4.85628 4.90444 4.99259 5.11860 5.15263 5.17485 5.34017 5.36558 5.43133 5.43490 5.46159 5.61531 5.68153 5.73656 5.83821 6.14941 6.18505 6.32603 6.78809 6.98279 7.04558 7.32011 7.77326 7.98668 9.16518 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.001819 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.251353 B =15388.137079 C =16200.480042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.246 1.246 7 C -0.237 4.237 8 H 0.046 0.954 9 N -0.744 5.744 10 C 0.168 3.832 11 H 0.031 0.969 12 C -0.123 4.123 13 C -0.123 4.123 14 C 0.096 3.904 15 N -0.598 5.598 16 C 0.502 3.498 17 O -0.583 6.583 18 C 0.131 3.869 19 N -0.727 5.727 20 C 0.708 3.292 21 O -0.604 6.604 22 N -0.677 5.677 23 C 0.144 3.856 24 C -0.151 4.151 25 C -0.104 4.104 26 C -0.140 4.140 27 C -0.111 4.111 28 C -0.143 4.143 29 C 0.105 3.895 30 H 0.258 0.742 31 H 0.370 0.630 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.412 0.588 41 H 0.421 0.579 42 H 0.143 0.857 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.138 0.862 46 H 0.121 0.879 47 H 0.070 0.930 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.463 -23.753 6.274 31.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.170 1.170 7 C -0.368 4.368 8 H 0.064 0.936 9 N -0.387 5.387 10 C 0.059 3.941 11 H 0.050 0.950 12 C -0.161 4.161 13 C -0.162 4.162 14 C -0.025 4.025 15 N -0.331 5.331 16 C 0.291 3.709 17 O -0.464 6.464 18 C 0.003 3.997 19 N -0.385 5.385 20 C 0.408 3.592 21 O -0.483 6.483 22 N -0.325 5.325 23 C 0.049 3.951 24 C -0.172 4.172 25 C -0.122 4.122 26 C -0.159 4.159 27 C -0.130 4.130 28 C -0.164 4.164 29 C -0.020 4.020 30 H 0.067 0.933 31 H 0.204 0.796 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.132 0.868 36 H 0.113 0.887 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.250 0.750 41 H 0.259 0.741 42 H 0.160 0.840 43 H 0.169 0.831 44 H 0.164 0.836 45 H 0.156 0.844 46 H 0.139 0.861 47 H 0.088 0.912 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 20.654 -23.890 6.082 32.161 hybrid contribution -1.451 1.623 0.393 2.212 sum 19.203 -22.267 6.475 30.108 Atomic orbital electron populations 1.69912 1.07422 1.26840 1.59258 1.25611 0.96174 1.01648 1.02190 0.85309 0.78687 0.78867 0.78248 1.20119 1.22478 1.17008 1.18960 0.82743 0.93139 1.41944 0.93597 1.42662 1.02319 1.03781 1.89932 1.20662 0.93181 0.87063 0.93214 0.95039 1.21813 0.93676 0.99151 1.01436 1.21882 1.02241 0.95738 0.96323 1.22228 0.82031 1.04675 0.93521 1.48199 1.19292 1.10204 1.55383 1.20977 0.86874 0.85232 0.77860 1.90706 1.23926 1.84442 1.47280 1.21002 0.94956 0.83030 1.00692 1.44759 1.22472 1.09376 1.61857 1.15813 0.83961 0.80397 0.79004 1.90906 1.19857 1.82734 1.54841 1.42435 1.25571 1.07191 1.57320 1.17764 0.92710 0.83576 1.01013 1.21177 1.00576 0.91346 1.04088 1.21315 0.95455 0.97154 0.98286 1.21484 0.94012 0.99407 1.00996 1.21317 1.01019 0.91718 0.98919 1.21352 0.94037 0.98924 1.02069 1.22215 0.94339 0.85805 0.99656 0.93284 0.79573 0.91380 0.90423 0.91959 0.86810 0.88742 0.86759 0.86880 0.86299 0.75034 0.74114 0.83959 0.83127 0.83624 0.84421 0.86093 0.91168 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.02 13.97 21.65 0.30 -63.71 16 2 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16 3 Si 0.96 44.87 27.73 68.60 1.90 46.77 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.25 -10.07 6.52 99.48 0.65 -9.42 16 7 C -0.24 -13.67 10.41 84.04 0.88 -12.79 16 8 H 0.05 3.00 8.06 -2.91 -0.02 2.97 16 9 N -0.74 -33.83 4.93 -322.55 -1.59 -35.42 16 10 C 0.17 6.11 2.92 45.07 0.13 6.25 16 11 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 12 C -0.12 -3.02 5.36 30.62 0.16 -2.86 16 13 C -0.12 -2.05 6.08 30.67 0.19 -1.86 16 14 C 0.10 1.49 6.34 86.36 0.55 2.04 16 15 N -0.60 -15.39 2.97 -818.91 -2.43 -17.82 16 16 C 0.50 13.69 7.77 87.66 0.68 14.37 16 17 O -0.58 -21.25 15.08 -3.07 -0.05 -21.29 16 18 C 0.13 2.55 4.50 85.63 0.39 2.93 16 19 N -0.73 -15.05 5.53 -482.30 -2.67 -17.72 16 20 C 0.71 15.83 8.41 179.06 1.51 17.34 16 21 O -0.60 -16.76 13.78 -3.98 -0.05 -16.82 16 22 N -0.68 -12.05 5.34 -317.18 -1.70 -13.74 16 23 C 0.14 2.74 6.30 38.14 0.24 2.98 16 24 C -0.15 -2.21 9.97 22.39 0.22 -1.98 16 25 C -0.10 -1.26 10.04 22.25 0.22 -1.04 16 26 C -0.14 -1.78 10.04 22.29 0.22 -1.56 16 27 C -0.11 -1.79 10.04 22.25 0.22 -1.56 16 28 C -0.14 -2.98 8.70 22.39 0.19 -2.78 16 29 C 0.11 3.67 6.01 86.36 0.52 4.19 16 30 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 31 H 0.37 15.68 5.66 -92.71 -0.52 15.15 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.11 1.13 5.93 -2.39 -0.01 1.12 16 38 H 0.11 1.94 7.70 -2.39 -0.02 1.93 16 39 H 0.12 1.87 7.94 -2.39 -0.02 1.85 16 40 H 0.41 8.52 7.46 -92.71 -0.69 7.83 16 41 H 0.42 5.13 8.84 -92.71 -0.82 4.31 16 42 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 43 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 45 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 46 H 0.12 2.94 6.22 -2.91 -0.02 2.92 16 47 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 48 H 0.05 2.15 7.01 -2.39 -0.02 2.13 16 Total: -1.00 -82.60 390.75 -0.57 -83.17 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: -1.08 Total: 36.30 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 6.79 Total: 20.28 kcal Atomic # 7 Polarization: -140.33 SS G_CDS: -8.08 Total: -148.41 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.10 Total: -38.11 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.77 kcal Total: -82.60 -0.57 -83.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208840796.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.819 kcal (2) G-P(sol) polarization free energy of solvation -82.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds