Wall clock time and date at job start Sat Apr 11 2020 07:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00221 * 2 1 4 4 H 1.48506 * 109.47297 * 90.00069 * 3 2 1 5 5 H 1.48503 * 109.47261 * 330.00250 * 3 2 1 6 6 H 1.48500 * 109.47454 * 210.00243 * 3 2 1 7 7 C 1.38949 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00197 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00130 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99602 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00454 * 180.02562 * 10 9 7 13 13 N 1.46892 * 109.47369 * 179.97438 * 12 10 9 14 14 C 1.46903 * 111.00144 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.47338 * 34.99302 * 14 13 12 16 16 C 1.53008 * 109.46921 * 274.99861 * 14 13 12 17 17 C 1.53001 * 109.47132 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47034 * 60.00044 * 17 16 14 19 19 C 1.53000 * 109.47042 * 300.00192 * 18 17 16 20 20 C 1.52996 * 109.47274 * 155.00190 * 14 13 12 21 21 H 1.08994 * 109.47601 * 59.99785 * 20 14 13 22 22 N 1.46499 * 109.47279 * 299.99300 * 20 14 13 23 23 C 1.34779 * 120.00150 * 154.99760 * 22 20 14 24 24 O 1.21508 * 119.99966 * 0.02562 * 23 22 20 25 25 C 1.48170 * 119.99930 * 180.02562 * 23 22 20 26 26 C 1.39307 * 119.72254 * 179.73024 * 25 23 22 27 27 C 1.38587 * 119.05877 * 179.71477 * 26 25 23 28 28 C 1.38633 * 118.48749 * 0.54692 * 27 26 25 29 29 C 1.38559 * 119.35192 * 359.73922 * 28 27 26 30 30 N 1.31523 * 120.90264 * 359.96719 * 29 28 27 31 31 H 0.97001 * 120.00308 * 180.02562 * 1 2 3 32 32 H 0.97006 * 120.00323 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.46878 * 300.00310 * 12 10 9 34 34 H 1.09007 * 109.47366 * 59.99693 * 12 10 9 35 35 H 1.00896 * 111.00553 * 56.04530 * 13 12 10 36 36 H 1.09005 * 109.46976 * 300.00128 * 16 14 13 37 37 H 1.09003 * 109.46569 * 59.99845 * 16 14 13 38 38 H 1.08997 * 109.46717 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47139 * 300.00350 * 17 16 14 40 40 H 1.09005 * 109.46970 * 59.99690 * 18 17 16 41 41 H 1.08992 * 109.47159 * 179.97438 * 18 17 16 42 42 H 1.09003 * 109.46486 * 180.02562 * 19 18 17 43 43 H 1.09005 * 109.46828 * 299.99585 * 19 18 17 44 44 H 0.96997 * 119.99742 * 335.00973 * 22 20 14 45 45 H 1.08004 * 120.46722 * 359.97438 * 26 25 23 46 46 H 1.07997 * 120.76051 * 180.28597 * 27 26 25 47 47 H 1.07995 * 120.31963 * 179.74947 * 28 27 26 48 48 H 1.07995 * 119.54552 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 1.4001 5 1 1.4456 2.6527 -0.7000 6 1 3.5457 1.4402 -0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1982 -5.9795 -0.0016 14 6 1.4979 -7.2708 -0.0028 15 1 0.5848 -7.1885 -0.5924 16 6 1.1438 -7.6603 1.4339 17 6 0.4139 -9.0049 1.4326 18 6 1.3197 -10.0763 0.8223 19 6 1.6738 -9.6869 -0.6143 20 6 2.4042 -8.3419 -0.6129 21 1 3.3172 -8.4243 -0.0233 22 7 2.7432 -7.9692 -1.9885 23 6 3.8743 -8.4356 -2.5538 24 8 4.6126 -9.1657 -1.9227 25 6 4.2174 -8.0581 -3.9449 26 6 5.3908 -8.5390 -4.5217 27 6 5.6952 -8.1821 -5.8257 28 6 4.8209 -7.3469 -6.5040 29 6 3.6747 -6.9013 -5.8658 30 7 3.4070 -7.2603 -4.6292 31 1 -0.4851 -0.8400 0.0004 32 1 0.3532 -2.3906 -0.0005 33 1 0.6167 -4.9208 0.8886 34 1 0.6173 -4.9205 -0.8914 35 1 2.8331 -5.9128 0.7797 36 1 2.0569 -7.7426 2.0236 37 1 0.4982 -6.8971 1.8685 38 1 0.1621 -9.2825 2.4562 39 1 -0.4992 -8.9222 0.8430 40 1 2.2328 -10.1591 1.4119 41 1 0.7999 -11.0343 0.8218 42 1 2.3187 -10.4505 -1.0492 43 1 0.7607 -9.6042 -1.2039 44 1 2.1537 -7.3866 -2.4923 45 1 6.0517 -9.1842 -3.9619 46 1 6.5952 -8.5428 -6.3013 47 1 5.0312 -7.0469 -7.5199 48 1 2.9916 -6.2502 -6.3911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224466517.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:33 Heat of formation + Delta-G solvation = -46.438116 kcal Electronic energy + Delta-G solvation = -30220.388534 eV Core-core repulsion = 26081.413613 eV Total energy + Delta-G solvation = -4138.974920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.75431 -39.73038 -38.49815 -37.92680 -34.82882 -34.26247 -33.99873 -32.74648 -31.64282 -31.08380 -29.92310 -29.07884 -25.98926 -24.82829 -23.85331 -23.68462 -22.62038 -21.69823 -20.59156 -20.33234 -19.56344 -18.20356 -17.88434 -16.96849 -16.72929 -16.12064 -15.72219 -15.41969 -15.20927 -15.11879 -15.04532 -14.51781 -14.32206 -14.15786 -13.90458 -13.73316 -13.58682 -13.44660 -13.38943 -12.99661 -12.92584 -12.61668 -12.18061 -12.17730 -11.77717 -11.39272 -11.28096 -11.18645 -11.05275 -10.90798 -10.84018 -10.43398 -10.27658 -10.21213 -10.19478 -9.85704 -9.64925 -9.53168 -9.41779 -8.92313 -8.49141 -8.08600 -8.00591 -6.74076 -3.86957 0.49466 1.00578 2.72190 3.09125 3.31567 3.35840 3.55170 3.76158 3.86460 3.98628 4.04372 4.32440 4.54795 4.56212 4.58383 4.76256 4.78261 4.79101 4.85368 4.96124 4.98882 5.10519 5.19750 5.23783 5.26302 5.31779 5.32909 5.49949 5.54705 5.65311 5.70152 5.74394 5.83754 5.85115 5.86572 5.91639 5.93467 5.96009 6.04067 6.10988 6.21618 6.35210 6.54796 7.13033 7.43414 7.58103 7.72904 7.82921 8.09825 8.24329 8.61909 8.82054 9.49392 9.90137 10.69559 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.007845 B = 0.003128 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3568.074689 B = 8947.932990 C =11852.866211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.010 4.010 3 Si 1.093 2.907 4 H -0.285 1.285 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.381 4.381 8 H 0.098 0.902 9 N -0.577 5.577 10 C 0.444 3.556 11 O -0.575 6.575 12 C 0.052 3.948 13 N -0.660 5.660 14 C 0.080 3.920 15 H 0.082 0.918 16 C -0.148 4.148 17 C -0.116 4.116 18 C -0.116 4.116 19 C -0.128 4.128 20 C 0.159 3.841 21 H 0.089 0.911 22 N -0.684 5.684 23 C 0.573 3.427 24 O -0.543 6.543 25 C 0.083 3.917 26 C -0.115 4.115 27 C -0.084 4.084 28 C -0.154 4.154 29 C 0.099 3.901 30 N -0.454 5.454 31 H 0.261 0.739 32 H 0.375 0.625 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.352 0.648 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.412 0.588 45 H 0.147 0.853 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.348 -20.682 -7.839 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.212 4.212 3 Si 0.919 3.081 4 H -0.211 1.211 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.510 4.510 8 H 0.116 0.884 9 N -0.215 5.215 10 C 0.230 3.770 11 O -0.458 6.458 12 C -0.081 4.081 13 N -0.291 5.291 14 C -0.031 4.031 15 H 0.100 0.900 16 C -0.188 4.188 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.167 4.167 20 C 0.054 3.946 21 H 0.107 0.893 22 N -0.333 5.333 23 C 0.358 3.642 24 O -0.420 6.420 25 C -0.055 4.055 26 C -0.136 4.136 27 C -0.110 4.110 28 C -0.174 4.174 29 C -0.060 4.060 30 N -0.166 5.166 31 H 0.072 0.928 32 H 0.208 0.792 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.172 0.828 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.249 0.751 45 H 0.165 0.835 46 H 0.158 0.842 47 H 0.157 0.843 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.853 -19.180 -7.625 20.723 hybrid contribution -0.280 -1.594 0.176 1.628 sum 1.572 -20.773 -7.448 22.124 Atomic orbital electron populations 1.70869 1.06509 1.29376 1.47450 1.26485 0.96551 1.02592 0.95572 0.83101 0.74405 0.73458 0.77122 1.21149 1.20641 1.20940 1.20560 0.94660 0.83882 1.51916 0.88365 1.41936 1.08129 1.05553 1.65881 1.19741 0.88426 0.84462 0.84411 1.90544 1.13682 1.86898 1.54658 1.21696 0.94403 0.91020 1.00997 1.60136 1.18185 0.99282 1.51462 1.21869 0.96361 0.89464 0.95429 0.89956 1.22278 1.01292 0.97793 0.97413 1.21510 0.98516 0.94489 1.00942 1.21497 0.99921 0.98325 0.95666 1.21944 1.00520 0.96985 0.97293 1.20963 0.98606 0.92540 0.82520 0.89279 1.45601 1.23381 1.49682 1.14604 1.17808 0.81327 0.80205 0.84862 1.90754 1.50538 1.37655 1.63046 1.21221 0.93027 0.96237 0.95007 1.22132 0.96781 0.99210 0.95453 1.21622 0.99366 0.96001 0.93976 1.22386 0.95488 0.97842 1.01644 1.22841 0.95745 0.97184 0.90252 1.67579 1.31211 1.09543 1.08237 0.92764 0.79210 0.93915 0.89731 0.82838 0.91281 0.91348 0.91831 0.91811 0.91642 0.91720 0.91217 0.91697 0.75140 0.83518 0.84163 0.84263 0.81985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.37 13.68 55.50 0.76 -24.61 16 2 C -0.01 -0.27 5.50 -17.47 -0.10 -0.36 16 3 Si 1.09 24.55 29.92 -169.99 -5.09 19.47 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.38 -10.81 9.68 -14.93 -0.14 -10.96 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.58 -14.56 5.28 -10.96 -0.06 -14.62 16 10 C 0.44 10.52 7.82 -10.99 -0.09 10.43 16 11 O -0.57 -15.95 15.78 5.54 0.09 -15.86 16 12 C 0.05 0.88 5.96 -4.98 -0.03 0.85 16 13 N -0.66 -10.44 5.70 -107.99 -0.62 -11.06 16 14 C 0.08 0.95 1.99 -67.71 -0.13 0.82 16 15 H 0.08 0.93 7.80 -51.93 -0.40 0.53 16 16 C -0.15 -1.53 5.17 -26.73 -0.14 -1.66 16 17 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 18 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 19 C -0.13 -1.31 5.50 -26.71 -0.15 -1.45 16 20 C 0.16 1.96 2.12 -67.91 -0.14 1.82 16 21 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 22 N -0.68 -9.29 4.90 -54.63 -0.27 -9.56 16 23 C 0.57 8.61 7.78 -12.18 -0.09 8.51 16 24 O -0.54 -9.22 15.99 5.36 0.09 -9.13 16 25 C 0.08 1.13 6.75 -83.01 -0.56 0.57 16 26 C -0.11 -1.30 9.63 -39.06 -0.38 -1.68 16 27 C -0.08 -0.72 10.17 -39.31 -0.40 -1.12 16 28 C -0.15 -1.25 10.11 -39.32 -0.40 -1.64 16 29 C 0.10 1.00 11.18 -17.57 -0.20 0.81 16 30 N -0.45 -5.92 9.54 -9.80 -0.09 -6.01 16 31 H 0.26 7.04 6.78 -40.82 -0.28 6.76 16 32 H 0.37 8.72 6.73 -40.82 -0.27 8.45 16 33 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 34 H 0.08 1.33 8.05 -51.92 -0.42 0.91 16 35 H 0.35 5.99 8.17 -39.29 -0.32 5.67 16 36 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 37 H 0.07 0.72 7.46 -51.93 -0.39 0.34 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.41 5.56 7.93 -40.82 -0.32 5.23 16 45 H 0.15 1.57 7.64 -52.48 -0.40 1.16 16 46 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 47 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 48 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -35.20 397.21 -9.45 -44.65 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -6.99 Total: 18.13 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -3.26 Total: 2.63 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -0.28 Total: -65.87 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: 0.17 Total: -24.99 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.09 Total: 19.47 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.20 -9.45 -44.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224466517.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.785 kcal (2) G-P(sol) polarization free energy of solvation -35.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds