Wall clock time and date at job start Sat Apr 11 2020 07:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00221 * 2 1 4 4 H 1.48506 * 109.47297 * 90.00069 * 3 2 1 5 5 H 1.48503 * 109.47261 * 330.00250 * 3 2 1 6 6 H 1.48500 * 109.47454 * 210.00243 * 3 2 1 7 7 C 1.38949 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00197 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00130 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99602 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00454 * 180.02562 * 10 9 7 13 13 N 1.46892 * 109.47369 * 179.97438 * 12 10 9 14 14 C 1.46903 * 111.00144 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.47338 * 34.99302 * 14 13 12 16 16 C 1.53008 * 109.46921 * 274.99861 * 14 13 12 17 17 C 1.53001 * 109.47132 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47034 * 60.00044 * 17 16 14 19 19 C 1.53000 * 109.47042 * 300.00192 * 18 17 16 20 20 C 1.52996 * 109.47274 * 155.00190 * 14 13 12 21 21 H 1.08994 * 109.47601 * 59.99785 * 20 14 13 22 22 N 1.46499 * 109.47279 * 299.99300 * 20 14 13 23 23 C 1.34779 * 120.00150 * 154.99760 * 22 20 14 24 24 O 1.21508 * 119.99966 * 0.02562 * 23 22 20 25 25 C 1.48170 * 119.99930 * 180.02562 * 23 22 20 26 26 C 1.39307 * 119.72254 * 179.73024 * 25 23 22 27 27 C 1.38587 * 119.05877 * 179.71477 * 26 25 23 28 28 C 1.38633 * 118.48749 * 0.54692 * 27 26 25 29 29 C 1.38559 * 119.35192 * 359.73922 * 28 27 26 30 30 N 1.31523 * 120.90264 * 359.96719 * 29 28 27 31 31 H 0.97001 * 120.00308 * 180.02562 * 1 2 3 32 32 H 0.97006 * 120.00323 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.46878 * 300.00310 * 12 10 9 34 34 H 1.09007 * 109.47366 * 59.99693 * 12 10 9 35 35 H 1.00896 * 111.00553 * 56.04530 * 13 12 10 36 36 H 1.09005 * 109.46976 * 300.00128 * 16 14 13 37 37 H 1.09003 * 109.46569 * 59.99845 * 16 14 13 38 38 H 1.08997 * 109.46717 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47139 * 300.00350 * 17 16 14 40 40 H 1.09005 * 109.46970 * 59.99690 * 18 17 16 41 41 H 1.08992 * 109.47159 * 179.97438 * 18 17 16 42 42 H 1.09003 * 109.46486 * 180.02562 * 19 18 17 43 43 H 1.09005 * 109.46828 * 299.99585 * 19 18 17 44 44 H 0.96997 * 119.99742 * 335.00973 * 22 20 14 45 45 H 1.08004 * 120.46722 * 359.97438 * 26 25 23 46 46 H 1.07997 * 120.76051 * 180.28597 * 27 26 25 47 47 H 1.07995 * 120.31963 * 179.74947 * 28 27 26 48 48 H 1.07995 * 119.54552 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 1.4001 5 1 1.4456 2.6527 -0.7000 6 1 3.5457 1.4402 -0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1982 -5.9795 -0.0016 14 6 1.4979 -7.2708 -0.0028 15 1 0.5848 -7.1885 -0.5924 16 6 1.1438 -7.6603 1.4339 17 6 0.4139 -9.0049 1.4326 18 6 1.3197 -10.0763 0.8223 19 6 1.6738 -9.6869 -0.6143 20 6 2.4042 -8.3419 -0.6129 21 1 3.3172 -8.4243 -0.0233 22 7 2.7432 -7.9692 -1.9885 23 6 3.8743 -8.4356 -2.5538 24 8 4.6126 -9.1657 -1.9227 25 6 4.2174 -8.0581 -3.9449 26 6 5.3908 -8.5390 -4.5217 27 6 5.6952 -8.1821 -5.8257 28 6 4.8209 -7.3469 -6.5040 29 6 3.6747 -6.9013 -5.8658 30 7 3.4070 -7.2603 -4.6292 31 1 -0.4851 -0.8400 0.0004 32 1 0.3532 -2.3906 -0.0005 33 1 0.6167 -4.9208 0.8886 34 1 0.6173 -4.9205 -0.8914 35 1 2.8331 -5.9128 0.7797 36 1 2.0569 -7.7426 2.0236 37 1 0.4982 -6.8971 1.8685 38 1 0.1621 -9.2825 2.4562 39 1 -0.4992 -8.9222 0.8430 40 1 2.2328 -10.1591 1.4119 41 1 0.7999 -11.0343 0.8218 42 1 2.3187 -10.4505 -1.0492 43 1 0.7607 -9.6042 -1.2039 44 1 2.1537 -7.3866 -2.4923 45 1 6.0517 -9.1842 -3.9619 46 1 6.5952 -8.5428 -6.3013 47 1 5.0312 -7.0469 -7.5199 48 1 2.9916 -6.2502 -6.3911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224466517.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:32 Heat of formation + Delta-G solvation = -73.103298 kcal Electronic energy + Delta-G solvation = -30221.544823 eV Core-core repulsion = 26081.413613 eV Total energy + Delta-G solvation = -4140.131209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.69855 -40.74354 -40.15256 -39.14960 -36.53236 -35.59518 -35.27618 -33.53222 -33.13852 -32.47583 -30.89662 -30.16398 -27.55850 -25.86130 -25.50767 -24.45912 -23.52437 -22.65301 -21.78763 -21.44306 -21.00076 -19.97080 -19.21897 -18.24263 -17.81519 -17.12123 -16.95379 -16.67921 -16.50882 -16.29402 -16.13416 -15.82307 -15.61848 -15.43153 -15.11733 -14.83923 -14.79455 -14.61530 -14.23665 -14.16906 -13.90694 -13.71105 -13.43205 -13.35291 -13.19393 -12.91504 -12.76399 -12.25990 -12.18796 -11.95276 -11.92919 -11.88340 -11.61002 -11.53191 -11.35584 -11.27391 -10.96355 -10.54229 -10.42990 -10.28319 -10.10814 -9.94553 -9.34351 -8.93177 -6.06871 -0.35323 0.25213 1.51160 1.53888 1.71760 1.81202 2.00878 2.09863 2.38823 2.74684 2.88109 3.15053 3.16158 3.33226 3.62879 3.76274 3.90535 3.96490 4.02159 4.05544 4.09180 4.10170 4.13323 4.21172 4.31016 4.36826 4.39348 4.46528 4.50940 4.52316 4.74705 4.81922 4.84943 4.96035 5.04748 5.09939 5.13257 5.14475 5.20904 5.29304 5.43093 5.50584 5.59350 5.63637 5.93285 5.99292 6.26233 6.42104 6.58075 6.74878 6.80851 7.15239 7.44076 7.93358 8.54838 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.007845 B = 0.003128 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3568.074689 B = 8947.932990 C =11852.866211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.040 4.040 3 Si 1.134 2.866 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.280 1.280 7 C -0.410 4.410 8 H 0.069 0.931 9 N -0.585 5.585 10 C 0.442 3.558 11 O -0.620 6.620 12 C 0.069 3.931 13 N -0.675 5.675 14 C 0.087 3.913 15 H 0.098 0.902 16 C -0.144 4.144 17 C -0.110 4.110 18 C -0.113 4.113 19 C -0.119 4.119 20 C 0.159 3.841 21 H 0.062 0.938 22 N -0.681 5.681 23 C 0.565 3.435 24 O -0.576 6.576 25 C 0.049 3.951 26 C -0.126 4.126 27 C -0.079 4.079 28 C -0.137 4.137 29 C 0.083 3.917 30 N -0.480 5.480 31 H 0.260 0.740 32 H 0.385 0.615 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.342 0.658 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.078 0.922 44 H 0.413 0.587 45 H 0.144 0.856 46 H 0.176 0.824 47 H 0.180 0.820 48 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.234 -21.074 -9.107 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.239 4.239 3 Si 0.954 3.046 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.205 1.205 7 C -0.539 4.539 8 H 0.087 0.913 9 N -0.225 5.225 10 C 0.229 3.771 11 O -0.506 6.506 12 C -0.064 4.064 13 N -0.306 5.306 14 C -0.023 4.023 15 H 0.116 0.884 16 C -0.184 4.184 17 C -0.148 4.148 18 C -0.151 4.151 19 C -0.158 4.158 20 C 0.054 3.946 21 H 0.080 0.920 22 N -0.329 5.329 23 C 0.350 3.650 24 O -0.456 6.456 25 C -0.088 4.088 26 C -0.147 4.147 27 C -0.105 4.105 28 C -0.157 4.157 29 C -0.076 4.076 30 N -0.192 5.192 31 H 0.071 0.929 32 H 0.219 0.781 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.160 0.840 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.249 0.751 45 H 0.161 0.839 46 H 0.194 0.806 47 H 0.197 0.803 48 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.682 -19.603 -8.883 21.533 hybrid contribution 0.114 -1.522 0.476 1.599 sum 0.796 -21.126 -8.407 22.751 Atomic orbital electron populations 1.70936 1.06897 1.29553 1.48130 1.27770 0.96708 1.05189 0.94211 0.82613 0.73604 0.70335 0.78039 1.19584 1.19547 1.20531 1.20512 0.93759 0.85785 1.53885 0.91275 1.41969 1.08575 1.05415 1.66522 1.20919 0.88257 0.86066 0.81813 1.90516 1.16109 1.87892 1.56040 1.21555 0.93911 0.87653 1.03237 1.60111 1.18591 1.00536 1.51386 1.21909 0.96199 0.87264 0.96934 0.88410 1.22231 1.01278 0.99141 0.95714 1.21484 0.98412 0.92884 1.02001 1.21493 0.99954 0.99389 0.94226 1.21865 1.00313 0.94957 0.98695 1.21025 0.97862 0.94056 0.81660 0.91981 1.45661 1.23034 1.49263 1.14924 1.18217 0.81223 0.79798 0.85721 1.90711 1.51511 1.39245 1.64115 1.21117 0.94639 0.98356 0.94676 1.22286 0.96153 0.99387 0.96920 1.22062 1.00499 0.95260 0.92657 1.22838 0.93884 0.95945 1.03017 1.23408 0.97171 0.97466 0.89582 1.67500 1.31867 1.10141 1.09733 0.92891 0.78077 0.91148 0.87545 0.83955 0.92090 0.91026 0.90464 0.90578 0.92439 0.89866 0.92725 0.90352 0.75103 0.83861 0.80613 0.80266 0.79739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.05 13.68 21.66 0.30 -50.75 16 2 C -0.04 -2.21 5.50 84.93 0.47 -1.74 16 3 Si 1.13 49.07 29.92 68.60 2.05 51.13 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.41 -23.75 9.68 84.04 0.81 -22.94 16 8 H 0.07 4.35 7.16 -2.91 -0.02 4.33 16 9 N -0.59 -29.90 5.28 -306.98 -1.62 -31.52 16 10 C 0.44 21.16 7.82 87.66 0.69 21.85 16 11 O -0.62 -35.51 15.78 -3.08 -0.05 -35.56 16 12 C 0.07 2.28 5.96 85.56 0.51 2.79 16 13 N -0.68 -21.40 5.70 -495.58 -2.83 -24.23 16 14 C 0.09 2.01 1.99 44.92 0.09 2.10 16 15 H 0.10 1.99 7.80 -2.39 -0.02 1.97 16 16 C -0.14 -2.76 5.17 30.60 0.16 -2.60 16 17 C -0.11 -1.60 5.92 30.59 0.18 -1.41 16 18 C -0.11 -1.79 5.92 30.59 0.18 -1.61 16 19 C -0.12 -2.37 5.50 30.61 0.17 -2.21 16 20 C 0.16 4.01 2.12 45.01 0.10 4.11 16 21 H 0.06 1.91 7.58 -2.39 -0.02 1.89 16 22 N -0.68 -19.27 4.90 -445.04 -2.18 -21.45 16 23 C 0.56 18.04 7.78 86.88 0.68 18.71 16 24 O -0.58 -21.02 15.99 -3.74 -0.06 -21.08 16 25 C 0.05 1.39 6.75 41.91 0.28 1.67 16 26 C -0.13 -2.89 9.63 22.61 0.22 -2.68 16 27 C -0.08 -1.19 10.17 22.45 0.23 -0.97 16 28 C -0.14 -1.85 10.11 22.44 0.23 -1.62 16 29 C 0.08 1.57 11.18 84.82 0.95 2.52 16 30 N -0.48 -12.63 9.54 -184.92 -1.76 -14.40 16 31 H 0.26 13.97 6.78 -92.71 -0.63 13.34 16 32 H 0.39 17.88 6.73 -92.70 -0.62 17.26 16 33 H 0.07 1.99 7.44 -2.39 -0.02 1.98 16 34 H 0.11 3.12 8.05 -2.38 -0.02 3.10 16 35 H 0.34 11.97 8.17 -89.70 -0.73 11.24 16 36 H 0.06 1.27 8.13 -2.38 -0.02 1.25 16 37 H 0.07 1.35 7.46 -2.39 -0.02 1.33 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.35 8.14 -2.38 -0.02 1.34 16 44 H 0.41 11.42 7.93 -92.71 -0.74 10.68 16 45 H 0.14 3.24 7.64 -2.91 -0.02 3.21 16 46 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 47 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 48 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -79.93 397.21 -1.17 -81.10 By element: Atomic # 1 Polarization: 51.73 SS G_CDS: -0.94 Total: 50.79 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 5.93 Total: 15.98 kcal Atomic # 7 Polarization: -134.25 SS G_CDS: -8.10 Total: -142.35 kcal Atomic # 8 Polarization: -56.53 SS G_CDS: -0.11 Total: -56.64 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.05 Total: 51.13 kcal Total: -79.93 -1.17 -81.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224466517.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.997 kcal (2) G-P(sol) polarization free energy of solvation -79.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds