Wall clock time and date at job start Sat Apr 11 2020 07:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 120.00036 * 2 1 4 4 H 1.48506 * 109.47157 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47225 * 299.99854 * 3 2 1 6 6 H 1.48499 * 109.47602 * 59.99909 * 3 2 1 7 7 C 1.38949 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99832 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99796 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00189 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99910 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47265 * 180.02562 * 12 10 9 14 14 C 1.46839 * 111.00041 * 169.99806 * 13 12 10 15 15 C 1.53041 * 109.52367 * 185.83790 * 14 13 12 16 16 C 1.53113 * 109.27828 * 300.82488 * 15 14 13 17 17 N 1.46505 * 109.52259 * 177.56018 * 16 15 14 18 18 C 1.34774 * 120.00225 * 155.00206 * 17 16 15 19 19 O 1.21782 * 119.99809 * 359.97438 * 18 17 16 20 20 C 1.41520 * 120.00231 * 180.02562 * 18 17 16 21 21 C 1.35616 * 120.00430 * 179.97438 * 20 18 17 22 22 C 1.41665 * 120.00294 * 179.97438 * 21 20 18 23 23 C 1.38278 * 126.26249 * 179.97438 * 22 21 20 24 24 C 1.39784 * 107.08063 * 180.02562 * 23 22 21 25 25 C 1.35505 * 107.90998 * 359.73357 * 24 23 22 26 26 N 1.35752 * 108.90831 * 0.43632 * 25 24 23 27 27 H 0.97001 * 125.69188 * 179.83301 * 26 25 24 28 28 C 1.53120 * 109.16535 * 57.65609 * 16 15 14 29 29 C 1.46848 * 111.00034 * 294.21096 * 13 12 10 30 30 H 0.97005 * 120.00268 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99967 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46819 * 60.00331 * 12 10 9 33 33 H 1.09006 * 109.46970 * 300.00107 * 12 10 9 34 34 H 1.09006 * 109.45826 * 65.82802 * 14 13 12 35 35 H 1.09000 * 109.45957 * 305.85078 * 14 13 12 36 36 H 1.09002 * 109.50174 * 180.88189 * 15 14 13 37 37 H 1.08993 * 109.50171 * 60.76815 * 15 14 13 38 38 H 1.09003 * 109.52660 * 297.67957 * 16 15 14 39 39 H 0.97000 * 119.99542 * 334.99650 * 17 16 15 40 40 H 1.08004 * 119.99312 * 359.97438 * 20 18 17 41 41 H 1.08004 * 119.99508 * 359.97438 * 21 20 18 42 42 H 1.08004 * 126.45481 * 0.03460 * 23 22 21 43 43 H 1.08005 * 126.04445 * 180.02562 * 24 23 22 44 44 H 1.07990 * 125.54321 * 180.25884 * 25 24 23 45 45 H 1.08997 * 109.50250 * 62.27726 * 28 16 15 46 46 H 1.08990 * 109.50540 * 182.40380 * 28 16 15 47 47 H 1.08993 * 109.46036 * 294.17592 * 29 13 12 48 48 H 1.09005 * 109.45923 * 54.15593 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5579 0.0011 12 6 1.2436 -4.8630 0.0022 13 7 2.1982 -5.9795 0.0027 14 6 1.5140 -7.2567 0.2413 15 6 2.5505 -8.3741 0.3799 16 6 3.3843 -8.4520 -0.9019 17 7 4.4163 -9.4812 -0.7528 18 6 4.9276 -10.0858 -1.8434 19 8 4.5313 -9.7771 -2.9528 20 6 5.9241 -11.0803 -1.6994 21 6 6.4382 -11.6891 -2.7967 22 6 7.4361 -12.6842 -2.6526 23 6 8.0465 -13.3849 -3.6766 24 6 8.9620 -14.2607 -3.0861 25 6 8.9033 -14.0824 -1.7441 26 7 7.9753 -13.1311 -1.4669 27 1 7.7352 -12.8156 -0.5816 28 6 4.0475 -7.0951 -1.1535 29 6 2.9675 -6.0148 -1.2477 30 1 -0.4851 0.8401 0.0004 31 1 0.3533 -2.3906 0.0016 32 1 0.6167 -4.9209 -0.8876 33 1 0.6173 -4.9205 0.8925 34 1 0.8528 -7.4766 -0.5969 35 1 0.9281 -7.1890 1.1580 36 1 2.0416 -9.3244 0.5415 37 1 3.2034 -8.1618 1.2265 38 1 2.7376 -8.7040 -1.7424 39 1 4.7317 -9.7272 0.1309 40 1 6.2751 -11.3543 -0.7154 41 1 6.0867 -11.4153 -3.7806 42 1 7.8525 -13.2758 -4.7335 43 1 9.6060 -14.9534 -3.6076 44 1 9.4960 -14.6130 -1.0138 45 1 4.7239 -6.8626 -0.3310 46 1 4.6081 -7.1316 -2.0874 47 1 2.2995 -6.2405 -2.0788 48 1 3.4374 -5.0451 -1.4123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227085108.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:50 Heat of formation + Delta-G solvation = -5.044631 kcal Electronic energy + Delta-G solvation = -28784.084773 eV Core-core repulsion = 24646.904809 eV Total energy + Delta-G solvation = -4137.179964 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56314 -40.20147 -38.93759 -37.55127 -35.03031 -34.12282 -33.82833 -31.74224 -31.53895 -31.14805 -30.67875 -28.91150 -27.09152 -24.87465 -23.93294 -23.08610 -22.33014 -21.23493 -20.71803 -20.24348 -19.50662 -19.15971 -18.13039 -17.83265 -17.14914 -16.31368 -15.91378 -15.38984 -15.08994 -14.85464 -14.67173 -14.62252 -14.42547 -14.31401 -14.07786 -13.90332 -13.72769 -13.40968 -13.17349 -13.02543 -12.82678 -12.61977 -12.38704 -12.27825 -11.85528 -11.65588 -11.47775 -11.15397 -11.06195 -11.05396 -10.71522 -10.57415 -10.47613 -10.32366 -10.20391 -10.00854 -9.47008 -9.44180 -9.07926 -8.40268 -8.09087 -7.95041 -7.80678 -6.39643 -3.80189 0.30783 2.09129 2.60250 2.73648 3.15315 3.17805 3.28275 3.32704 3.35517 3.93058 4.01659 4.26841 4.50404 4.55032 4.69042 4.70240 4.88438 4.95366 4.97762 5.07584 5.10195 5.14193 5.27753 5.38318 5.47709 5.48370 5.59641 5.64029 5.68572 5.72739 5.84011 5.86351 5.87494 5.92083 6.01842 6.04086 6.17251 6.29742 6.35851 6.43349 6.52966 6.54541 6.59215 6.98178 7.31944 7.42503 7.46676 7.57607 8.09286 8.14701 8.64476 9.20702 9.57294 10.09219 10.78239 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.024085 B = 0.001549 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.263175 B =18066.041489 C =18704.865238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.577 6.577 12 C 0.046 3.954 13 N -0.516 5.516 14 C 0.058 3.942 15 C -0.120 4.120 16 C 0.143 3.857 17 N -0.723 5.723 18 C 0.551 3.449 19 O -0.550 6.550 20 C -0.247 4.247 21 C 0.029 3.971 22 C 0.002 3.998 23 C -0.141 4.141 24 C -0.208 4.208 25 C 0.015 3.985 26 N -0.544 5.544 27 H 0.417 0.583 28 C -0.119 4.119 29 C 0.055 3.945 30 H 0.270 0.730 31 H 0.392 0.608 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.398 0.602 40 H 0.114 0.886 41 H 0.151 0.849 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.169 0.831 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.024 0.976 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.335 -28.887 -0.681 30.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.230 3.770 11 O -0.461 6.461 12 C -0.085 4.085 13 N -0.241 5.241 14 C -0.071 4.071 15 C -0.158 4.158 16 C 0.039 3.961 17 N -0.372 5.372 18 C 0.342 3.658 19 O -0.430 6.430 20 C -0.269 4.269 21 C 0.009 3.991 22 C -0.108 4.108 23 C -0.166 4.166 24 C -0.232 4.232 25 C -0.120 4.120 26 N -0.139 5.139 27 H 0.254 0.746 28 C -0.158 4.158 29 C -0.073 4.073 30 H 0.080 0.920 31 H 0.225 0.775 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.231 0.769 40 H 0.132 0.868 41 H 0.168 0.832 42 H 0.163 0.837 43 H 0.159 0.841 44 H 0.186 0.814 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.042 0.958 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.007 -28.357 -0.931 30.432 hybrid contribution -0.748 0.723 0.389 1.111 sum 10.259 -27.634 -0.542 29.481 Atomic orbital electron populations 1.69621 1.05929 1.27994 1.50828 1.25249 0.95619 0.99681 0.97412 0.85810 0.79713 0.81210 0.77668 1.19244 1.20798 1.20790 1.19750 0.93385 0.82222 1.47360 0.87873 1.41875 1.09183 1.04594 1.64523 1.19756 0.88418 0.84562 0.84305 1.90485 1.13699 1.86886 1.55030 1.21835 0.93947 0.91217 1.01523 1.61540 1.25020 1.01321 1.36208 1.22026 0.94936 0.89242 1.00871 1.21826 0.98170 0.98251 0.97551 1.21104 0.88941 0.87422 0.98644 1.46014 1.41725 1.40495 1.08983 1.16920 0.82322 0.81866 0.84658 1.90849 1.61670 1.65510 1.24986 1.21727 1.03341 1.02842 0.99027 1.20864 0.89123 0.88815 1.00316 1.18308 1.03296 1.03624 0.85550 1.21579 0.98645 0.98063 0.98314 1.20921 1.04430 1.04670 0.93199 1.22093 0.96384 0.95708 0.97843 1.42200 1.31604 1.31649 1.08419 0.74550 1.21903 0.98547 0.92885 1.02450 1.22221 0.95016 1.01361 0.88705 0.91970 0.77509 0.93446 0.89339 0.94985 0.90343 0.91268 0.90440 0.89774 0.76857 0.86844 0.83157 0.83687 0.84110 0.81396 0.90832 0.91410 0.95823 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 10 C 0.44 10.51 7.46 -10.98 -0.08 10.43 16 11 O -0.58 -15.52 13.90 5.54 0.08 -15.44 16 12 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 13 N -0.52 -8.60 4.40 -236.11 -1.04 -9.64 16 14 C 0.06 0.73 5.46 -3.84 -0.02 0.71 16 15 C -0.12 -1.27 5.57 -26.65 -0.15 -1.42 16 16 C 0.14 1.75 2.52 -67.81 -0.17 1.58 16 17 N -0.72 -7.33 5.07 -56.60 -0.29 -7.62 16 18 C 0.55 6.49 7.53 -15.01 -0.11 6.37 16 19 O -0.55 -8.67 15.77 5.12 0.08 -8.59 16 20 C -0.25 -2.11 9.39 -39.27 -0.37 -2.48 16 21 C 0.03 0.25 9.40 -39.21 -0.37 -0.12 16 22 C 0.00 0.02 6.74 -83.91 -0.57 -0.55 16 23 C -0.14 -1.05 10.86 -38.99 -0.42 -1.48 16 24 C -0.21 -1.32 10.81 -39.98 -0.43 -1.75 16 25 C 0.01 0.08 11.90 -16.79 -0.20 -0.12 16 26 N -0.54 -3.03 5.94 -10.57 -0.06 -3.09 16 27 H 0.42 1.31 7.87 -40.82 -0.32 0.99 16 28 C -0.12 -1.76 5.67 -26.65 -0.15 -1.91 16 29 C 0.05 0.94 5.11 -3.83 -0.02 0.92 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 31 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 32 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 33 H 0.09 1.42 7.99 -51.93 -0.41 1.01 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.17 7.57 -51.93 -0.39 0.77 16 39 H 0.40 2.86 8.56 -40.82 -0.35 2.51 16 40 H 0.11 0.62 6.93 -52.48 -0.36 0.26 16 41 H 0.15 1.39 7.46 -52.48 -0.39 0.99 16 42 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 44 H 0.17 0.34 8.06 -52.49 -0.42 -0.09 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.11 2.21 5.78 -51.93 -0.30 1.91 16 LS Contribution 398.02 15.07 6.00 6.00 Total: -1.00 -34.97 398.02 -9.93 -44.90 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -7.01 Total: 12.67 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -3.33 Total: 3.01 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.72 Total: -58.72 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: 0.16 Total: -24.03 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.97 -9.93 -44.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227085108.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.858 kcal (2) G-P(sol) polarization free energy of solvation -34.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds