Wall clock time and date at job start Sat Apr 11 2020 07:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00069 * 2 1 4 4 H 1.48507 * 109.47045 * 275.40671 * 3 2 1 5 5 H 1.48496 * 109.47319 * 35.40395 * 3 2 1 6 6 H 1.48503 * 109.47179 * 155.40724 * 3 2 1 7 7 C 1.38814 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00328 * 37.30279 * 7 2 1 9 9 N 1.36939 * 119.99452 * 217.29850 * 7 2 1 10 10 C 1.46498 * 119.99854 * 212.59697 * 9 7 2 11 11 C 1.53006 * 109.47060 * 90.00567 * 10 9 7 12 12 C 1.52999 * 109.46810 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.46817 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00130 * 179.97438 * 13 12 11 15 15 O 1.21276 * 119.99770 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00057 * 180.02562 * 14 13 12 17 17 H 1.09006 * 110.43362 * 302.53724 * 16 14 13 18 18 C 1.54628 * 110.48525 * 179.97438 * 16 14 13 19 19 C 1.54484 * 101.76459 * 216.51918 * 18 16 14 20 20 N 1.46764 * 105.47024 * 25.41227 * 19 18 16 21 21 C 1.34416 * 111.30548 * 342.98647 * 20 19 18 22 22 O 1.21281 * 124.94418 * 180.43603 * 21 20 19 23 23 C 1.46504 * 120.00143 * 32.87848 * 9 7 2 24 24 C 1.50700 * 109.47259 * 94.00632 * 23 9 7 25 25 C 1.38677 * 120.41586 * 276.04488 * 24 23 9 26 26 C 1.38628 * 118.41559 * 179.78294 * 25 24 23 27 27 C 1.38231 * 119.16394 * 0.51196 * 26 25 24 28 28 N 1.31853 * 120.76121 * 359.72713 * 27 26 25 29 29 C 1.31883 * 121.72827 * 359.97438 * 28 27 26 30 30 H 0.97003 * 119.99514 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46967 * 210.00365 * 10 9 7 32 32 H 1.08998 * 109.47177 * 330.00508 * 10 9 7 33 33 H 1.09002 * 109.46342 * 299.99591 * 11 10 9 34 34 H 1.08998 * 109.47174 * 59.99939 * 11 10 9 35 35 H 1.08997 * 109.46917 * 299.99268 * 12 11 10 36 36 H 1.08998 * 109.47388 * 59.99964 * 12 11 10 37 37 H 0.96998 * 119.99673 * 0.02562 * 13 12 11 38 38 H 1.08998 * 110.97380 * 334.63806 * 18 16 14 39 39 H 1.09002 * 110.97171 * 98.36592 * 18 16 14 40 40 H 1.08994 * 110.24754 * 144.41620 * 19 18 16 41 41 H 1.09003 * 110.24467 * 266.32881 * 19 18 16 42 42 H 0.97003 * 124.34422 * 162.98196 * 20 19 18 43 43 H 1.08998 * 109.46762 * 214.00511 * 23 9 7 44 44 H 1.08999 * 109.46652 * 334.00764 * 23 9 7 45 45 H 1.07989 * 120.79128 * 0.02562 * 25 24 23 46 46 H 1.07997 * 120.41675 * 180.21656 * 26 25 24 47 47 H 1.08000 * 119.61749 * 179.75019 * 27 26 25 48 48 H 1.08000 * 119.62146 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3835 2.1124 -1.3939 5 1 1.5095 2.6170 0.8111 6 1 3.6003 1.4099 0.5827 7 6 2.0102 -1.2022 -0.0005 8 1 1.6359 -2.0416 -0.5677 9 7 3.1696 -1.3237 0.7181 10 6 4.2430 -2.1955 0.2346 11 6 5.1858 -1.3930 -0.6645 12 6 6.3065 -2.3037 -1.1699 13 7 7.2089 -1.5355 -2.0313 14 6 8.2769 -2.1352 -2.5935 15 8 8.4913 -3.3107 -2.3859 16 6 9.2054 -1.3448 -3.4790 17 1 8.6551 -0.9041 -4.3103 18 6 10.3494 -2.2437 -4.0027 19 6 11.5448 -1.2651 -4.0011 20 7 11.2208 -0.2529 -2.9890 21 6 9.9125 -0.2716 -2.6810 22 8 9.3768 0.4651 -1.8802 23 6 3.3339 -0.5867 1.9735 24 6 2.9243 -1.4640 3.1284 25 6 1.5909 -1.5637 3.4960 26 6 1.2601 -2.3863 4.5617 27 6 2.2643 -3.0666 5.2245 28 7 3.5227 -2.9439 4.8503 29 6 3.8733 -2.1752 3.8377 30 1 -0.4849 0.8401 0.0004 31 1 4.8001 -2.5912 1.0839 32 1 3.8131 -3.0202 -0.3339 33 1 4.6286 -0.9975 -1.5138 34 1 5.6157 -0.5684 -0.0960 35 1 6.8637 -2.6996 -0.3209 36 1 5.8763 -3.1281 -1.7386 37 1 7.0380 -0.5951 -2.1964 38 1 10.5290 -3.0799 -3.3271 39 1 10.1363 -2.5984 -5.0112 40 1 12.4612 -1.7895 -3.7304 41 1 11.6525 -0.7997 -4.9809 42 1 11.8677 0.3518 -2.5932 43 1 4.3780 -0.2963 2.0903 44 1 2.7083 0.3057 1.9555 45 1 0.8280 -1.0166 2.9623 46 1 0.2313 -2.4905 4.8731 47 1 2.0153 -3.7062 6.0583 48 1 4.9143 -2.1001 3.5600 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230811383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:11 Heat of formation + Delta-G solvation = -13.926790 kcal Electronic energy + Delta-G solvation = -29852.222889 eV Core-core repulsion = 25714.657765 eV Total energy + Delta-G solvation = -4137.565123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.12904 -39.55516 -39.01343 -36.84635 -36.53868 -34.98912 -32.46458 -32.15774 -31.81949 -31.22855 -30.00016 -28.29473 -26.08942 -25.53124 -23.07058 -22.85371 -22.16571 -21.81890 -21.50891 -20.42585 -19.63563 -17.83097 -17.53994 -17.10088 -16.57458 -16.40860 -15.94561 -15.69749 -15.40228 -15.07632 -14.91842 -14.54789 -14.23946 -14.21551 -14.11988 -13.63227 -13.41612 -13.30052 -13.12993 -12.97204 -12.70499 -12.49770 -12.32205 -12.25862 -11.88236 -11.65253 -11.55539 -11.30005 -11.16427 -10.77254 -10.55803 -10.38256 -10.31291 -10.12106 -9.99434 -9.69152 -9.56091 -9.13293 -8.97610 -8.92891 -8.55272 -8.39842 -7.06311 -6.22072 -3.41139 1.66973 1.91833 2.05742 2.48092 2.93854 3.21843 3.29281 3.42959 3.47946 3.88884 3.98570 4.32290 4.45457 4.46072 4.54856 4.80210 4.90703 4.92189 4.94469 5.08451 5.11396 5.37104 5.40429 5.43650 5.53939 5.64334 5.64924 5.67888 5.74096 5.81660 5.95542 6.00522 6.11185 6.27893 6.29827 6.32584 6.35700 6.51017 6.53602 6.60388 6.68717 6.78840 6.88814 7.06593 7.29983 7.50552 7.79964 7.85487 8.14085 8.24141 8.47206 8.84888 9.59232 10.00875 10.92567 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.002558 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.924742 B =10941.672889 C =12152.878274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.050 3.950 3 Si 0.836 3.164 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.261 1.261 7 C -0.279 4.279 8 H 0.078 0.922 9 N -0.589 5.589 10 C 0.155 3.845 11 C -0.154 4.154 12 C 0.120 3.880 13 N -0.712 5.712 14 C 0.528 3.472 15 O -0.540 6.540 16 C -0.153 4.153 17 H 0.135 0.865 18 C -0.118 4.118 19 C 0.099 3.901 20 N -0.729 5.729 21 C 0.529 3.471 22 O -0.516 6.516 23 C 0.185 3.815 24 C -0.131 4.131 25 C -0.049 4.049 26 C -0.177 4.177 27 C 0.074 3.926 28 N -0.495 5.495 29 C 0.090 3.910 30 H 0.264 0.736 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.406 0.594 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.414 0.586 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.140 0.860 46 H 0.126 0.874 47 H 0.144 0.856 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.502 -1.767 -5.567 19.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.153 4.153 3 Si 0.662 3.338 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.185 1.185 7 C -0.407 4.407 8 H 0.096 0.904 9 N -0.308 5.308 10 C 0.028 3.972 11 C -0.194 4.194 12 C -0.003 4.003 13 N -0.362 5.362 14 C 0.312 3.688 15 O -0.417 6.417 16 C -0.178 4.178 17 H 0.153 0.847 18 C -0.156 4.156 19 C -0.025 4.025 20 N -0.386 5.386 21 C 0.313 3.687 22 O -0.390 6.390 23 C 0.059 3.941 24 C -0.136 4.136 25 C -0.075 4.075 26 C -0.197 4.197 27 C -0.084 4.084 28 N -0.204 5.204 29 C -0.068 4.068 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.242 0.758 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.253 0.747 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.158 0.842 46 H 0.144 0.856 47 H 0.161 0.839 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 18.706 -2.680 -4.605 19.450 hybrid contribution -0.122 2.294 -0.692 2.399 sum 18.585 -0.386 -5.297 19.329 Atomic orbital electron populations 1.70135 1.06405 1.27137 1.47017 1.25322 0.94638 0.97442 0.97879 0.87524 0.82227 0.86049 0.77966 1.21690 1.22011 1.18538 1.18654 0.97461 0.96448 1.28101 0.90443 1.44059 1.15346 1.53265 1.18155 1.20794 0.88593 0.92779 0.95040 1.22500 0.95925 0.99322 1.01646 1.21487 0.90533 0.94894 0.93404 1.46095 1.26346 1.14671 1.49087 1.19676 0.81438 0.87328 0.80374 1.90698 1.73354 1.15932 1.61731 1.22191 0.98047 0.97419 1.00117 0.84702 1.22619 0.91177 0.97838 1.03980 1.22163 0.99127 0.89306 0.91927 1.46115 1.09811 1.39041 1.43616 1.20336 0.82958 0.83652 0.81738 1.90827 1.69854 1.43799 1.34566 1.20162 0.98465 0.92660 0.82846 1.21995 0.94331 1.00183 0.97121 1.21657 0.96695 0.95531 0.93664 1.22097 1.00442 0.99162 0.97961 1.22495 0.88462 0.98277 0.99130 1.67557 1.20173 1.17626 1.15018 1.22528 0.99420 0.93198 0.91639 0.92587 0.93841 0.92646 0.90878 0.92051 0.91767 0.91350 0.75842 0.87937 0.88479 0.89757 0.90631 0.74728 0.93269 0.91674 0.84229 0.85648 0.83867 0.83842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.37 13.97 55.49 0.78 -23.60 16 2 C 0.05 1.32 4.96 -17.43 -0.09 1.24 16 3 Si 0.84 20.02 26.24 -169.99 -4.46 15.56 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.26 -5.95 6.04 56.52 0.34 -5.61 16 7 C -0.28 -7.14 9.78 -15.06 -0.15 -7.29 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 9 N -0.59 -12.81 2.12 -174.61 -0.37 -13.18 16 10 C 0.15 2.84 5.69 -4.04 -0.02 2.81 16 11 C -0.15 -2.52 5.65 -26.73 -0.15 -2.67 16 12 C 0.12 1.76 5.67 -4.04 -0.02 1.74 16 13 N -0.71 -9.68 5.29 -60.30 -0.32 -10.00 16 14 C 0.53 6.97 7.12 -10.99 -0.08 6.89 16 15 O -0.54 -8.62 15.49 5.56 0.09 -8.54 16 16 C -0.15 -1.41 3.32 -91.78 -0.31 -1.71 16 17 H 0.14 0.93 8.14 -51.93 -0.42 0.50 16 18 C -0.12 -0.76 6.48 -25.10 -0.16 -0.93 16 19 C 0.10 0.43 7.78 -3.12 -0.02 0.41 16 20 N -0.73 -5.15 6.24 -59.20 -0.37 -5.52 16 21 C 0.53 5.67 7.85 -10.86 -0.09 5.59 16 22 O -0.52 -7.60 17.16 5.56 0.10 -7.51 16 23 C 0.19 3.80 4.21 -5.19 -0.02 3.77 16 24 C -0.13 -2.55 5.48 -104.48 -0.57 -3.12 16 25 C -0.05 -0.95 9.88 -39.28 -0.39 -1.34 16 26 C -0.18 -2.94 10.11 -39.44 -0.40 -3.33 16 27 C 0.07 1.19 11.18 -17.54 -0.20 1.00 16 28 N -0.49 -8.88 10.36 -13.25 -0.14 -9.01 16 29 C 0.09 1.61 10.84 -17.55 -0.19 1.41 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 32 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.41 5.25 7.99 -40.82 -0.33 4.92 16 38 H 0.10 0.86 7.00 -51.93 -0.36 0.50 16 39 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 42 H 0.41 2.31 8.96 -40.82 -0.37 1.94 16 43 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 44 H 0.07 1.45 4.31 -51.93 -0.22 1.22 16 45 H 0.14 2.97 8.06 -52.49 -0.42 2.54 16 46 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 47 H 0.14 1.84 8.06 -52.49 -0.42 1.41 16 48 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 399.28 15.07 6.02 6.02 Total: -1.00 -33.28 399.28 -8.76 -42.04 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -7.22 Total: 9.27 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -2.85 Total: 4.47 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.42 Total: -61.31 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.18 Total: -16.04 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.46 Total: 15.56 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.28 -8.76 -42.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230811383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.113 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds