Wall clock time and date at job start Sat Apr 11 2020 07:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00069 * 2 1 4 4 H 1.48507 * 109.47045 * 275.40671 * 3 2 1 5 5 H 1.48496 * 109.47319 * 35.40395 * 3 2 1 6 6 H 1.48503 * 109.47179 * 155.40724 * 3 2 1 7 7 C 1.38814 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00328 * 37.30279 * 7 2 1 9 9 N 1.36939 * 119.99452 * 217.29850 * 7 2 1 10 10 C 1.46498 * 119.99854 * 212.59697 * 9 7 2 11 11 C 1.53006 * 109.47060 * 90.00567 * 10 9 7 12 12 C 1.52999 * 109.46810 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.46817 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00130 * 179.97438 * 13 12 11 15 15 O 1.21276 * 119.99770 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00057 * 180.02562 * 14 13 12 17 17 H 1.09006 * 110.43362 * 302.53724 * 16 14 13 18 18 C 1.54628 * 110.48525 * 179.97438 * 16 14 13 19 19 C 1.54484 * 101.76459 * 216.51918 * 18 16 14 20 20 N 1.46764 * 105.47024 * 25.41227 * 19 18 16 21 21 C 1.34416 * 111.30548 * 342.98647 * 20 19 18 22 22 O 1.21281 * 124.94418 * 180.43603 * 21 20 19 23 23 C 1.46504 * 120.00143 * 32.87848 * 9 7 2 24 24 C 1.50700 * 109.47259 * 94.00632 * 23 9 7 25 25 C 1.38677 * 120.41586 * 276.04488 * 24 23 9 26 26 C 1.38628 * 118.41559 * 179.78294 * 25 24 23 27 27 C 1.38231 * 119.16394 * 0.51196 * 26 25 24 28 28 N 1.31853 * 120.76121 * 359.72713 * 27 26 25 29 29 C 1.31883 * 121.72827 * 359.97438 * 28 27 26 30 30 H 0.97003 * 119.99514 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46967 * 210.00365 * 10 9 7 32 32 H 1.08998 * 109.47177 * 330.00508 * 10 9 7 33 33 H 1.09002 * 109.46342 * 299.99591 * 11 10 9 34 34 H 1.08998 * 109.47174 * 59.99939 * 11 10 9 35 35 H 1.08997 * 109.46917 * 299.99268 * 12 11 10 36 36 H 1.08998 * 109.47388 * 59.99964 * 12 11 10 37 37 H 0.96998 * 119.99673 * 0.02562 * 13 12 11 38 38 H 1.08998 * 110.97380 * 334.63806 * 18 16 14 39 39 H 1.09002 * 110.97171 * 98.36592 * 18 16 14 40 40 H 1.08994 * 110.24754 * 144.41620 * 19 18 16 41 41 H 1.09003 * 110.24467 * 266.32881 * 19 18 16 42 42 H 0.97003 * 124.34422 * 162.98196 * 20 19 18 43 43 H 1.08998 * 109.46762 * 214.00511 * 23 9 7 44 44 H 1.08999 * 109.46652 * 334.00764 * 23 9 7 45 45 H 1.07989 * 120.79128 * 0.02562 * 25 24 23 46 46 H 1.07997 * 120.41675 * 180.21656 * 26 25 24 47 47 H 1.08000 * 119.61749 * 179.75019 * 27 26 25 48 48 H 1.08000 * 119.62146 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3835 2.1124 -1.3939 5 1 1.5095 2.6170 0.8111 6 1 3.6003 1.4099 0.5827 7 6 2.0102 -1.2022 -0.0005 8 1 1.6359 -2.0416 -0.5677 9 7 3.1696 -1.3237 0.7181 10 6 4.2430 -2.1955 0.2346 11 6 5.1858 -1.3930 -0.6645 12 6 6.3065 -2.3037 -1.1699 13 7 7.2089 -1.5355 -2.0313 14 6 8.2769 -2.1352 -2.5935 15 8 8.4913 -3.3107 -2.3859 16 6 9.2054 -1.3448 -3.4790 17 1 8.6551 -0.9041 -4.3103 18 6 10.3494 -2.2437 -4.0027 19 6 11.5448 -1.2651 -4.0011 20 7 11.2208 -0.2529 -2.9890 21 6 9.9125 -0.2716 -2.6810 22 8 9.3768 0.4651 -1.8802 23 6 3.3339 -0.5867 1.9735 24 6 2.9243 -1.4640 3.1284 25 6 1.5909 -1.5637 3.4960 26 6 1.2601 -2.3863 4.5617 27 6 2.2643 -3.0666 5.2245 28 7 3.5227 -2.9439 4.8503 29 6 3.8733 -2.1752 3.8377 30 1 -0.4849 0.8401 0.0004 31 1 4.8001 -2.5912 1.0839 32 1 3.8131 -3.0202 -0.3339 33 1 4.6286 -0.9975 -1.5138 34 1 5.6157 -0.5684 -0.0960 35 1 6.8637 -2.6996 -0.3209 36 1 5.8763 -3.1281 -1.7386 37 1 7.0380 -0.5951 -2.1964 38 1 10.5290 -3.0799 -3.3271 39 1 10.1363 -2.5984 -5.0112 40 1 12.4612 -1.7895 -3.7304 41 1 11.6525 -0.7997 -4.9809 42 1 11.8677 0.3518 -2.5932 43 1 4.3780 -0.2963 2.0903 44 1 2.7083 0.3057 1.9555 45 1 0.8280 -1.0166 2.9623 46 1 0.2313 -2.4905 4.8731 47 1 2.0153 -3.7062 6.0583 48 1 4.9143 -2.1001 3.5600 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230811383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:09 Heat of formation + Delta-G solvation = -38.595000 kcal Electronic energy + Delta-G solvation = -29853.292583 eV Core-core repulsion = 25714.657765 eV Total energy + Delta-G solvation = -4138.634817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.92560 -40.96794 -40.00722 -38.24527 -37.48742 -36.26502 -34.05839 -33.74353 -32.84165 -32.45482 -31.41580 -29.00287 -27.62493 -27.08324 -24.33825 -24.29420 -23.21720 -22.79310 -22.56761 -21.85493 -20.72919 -18.94287 -18.58641 -18.29612 -17.80986 -17.42154 -17.37820 -16.95548 -16.86909 -16.47622 -16.00429 -15.89141 -15.52991 -15.29275 -14.97800 -14.82833 -14.68377 -14.66390 -14.34208 -14.21796 -14.12776 -13.81924 -13.61035 -13.40335 -13.12777 -12.88507 -12.73863 -12.66482 -12.48388 -12.27733 -12.12608 -12.11172 -11.64909 -11.54272 -11.20091 -10.98784 -10.62109 -10.54794 -10.33027 -10.14015 -10.10335 -9.81359 -8.89567 -8.27456 -5.42926 0.29495 0.46503 1.21300 1.34378 1.46507 1.52310 1.55423 2.13673 2.43802 2.45126 2.83219 3.08624 3.25340 3.33805 3.47811 3.64988 3.79188 4.02765 4.04238 4.07516 4.09591 4.14734 4.22441 4.26092 4.27762 4.46879 4.49693 4.57375 4.62124 4.75564 4.79839 4.83767 4.87230 4.95583 4.99247 5.00919 5.17668 5.25370 5.34402 5.38226 5.46109 5.59841 5.73447 5.88207 5.91210 5.91988 6.18168 6.44899 6.95298 7.08094 7.09803 7.13577 7.64491 8.07892 8.91420 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.002558 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.924742 B =10941.672889 C =12152.878274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.009 3.991 3 Si 0.893 3.107 4 H -0.297 1.297 5 H -0.300 1.300 6 H -0.242 1.242 7 C -0.264 4.264 8 H 0.041 0.959 9 N -0.598 5.598 10 C 0.154 3.846 11 C -0.137 4.137 12 C 0.130 3.870 13 N -0.714 5.714 14 C 0.523 3.477 15 O -0.571 6.571 16 C -0.149 4.149 17 H 0.161 0.839 18 C -0.115 4.115 19 C 0.101 3.899 20 N -0.718 5.718 21 C 0.520 3.480 22 O -0.566 6.566 23 C 0.185 3.815 24 C -0.147 4.147 25 C -0.071 4.071 26 C -0.173 4.173 27 C 0.081 3.919 28 N -0.506 5.506 29 C 0.092 3.908 30 H 0.263 0.737 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.410 0.590 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.421 0.579 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.111 0.889 46 H 0.152 0.848 47 H 0.183 0.817 48 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.439 -2.184 -5.440 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.191 4.191 3 Si 0.719 3.281 4 H -0.225 1.225 5 H -0.227 1.227 6 H -0.165 1.165 7 C -0.393 4.393 8 H 0.059 0.941 9 N -0.318 5.318 10 C 0.028 3.972 11 C -0.177 4.177 12 C 0.006 3.994 13 N -0.364 5.364 14 C 0.309 3.691 15 O -0.451 6.451 16 C -0.173 4.173 17 H 0.178 0.822 18 C -0.153 4.153 19 C -0.022 4.022 20 N -0.373 5.373 21 C 0.305 3.695 22 O -0.445 6.445 23 C 0.059 3.941 24 C -0.151 4.151 25 C -0.098 4.098 26 C -0.192 4.192 27 C -0.076 4.076 28 N -0.214 5.214 29 C -0.065 4.065 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.246 0.754 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.262 0.738 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.129 0.871 46 H 0.170 0.830 47 H 0.200 0.800 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 21.734 -3.103 -4.494 22.409 hybrid contribution -1.018 2.276 -0.671 2.582 sum 20.716 -0.827 -5.165 21.366 Atomic orbital electron populations 1.70210 1.07771 1.27534 1.50049 1.25687 0.94923 0.99837 0.98625 0.86623 0.81852 0.82420 0.77179 1.22543 1.22726 1.16535 1.18452 0.98369 0.95113 1.27359 0.94086 1.44108 1.15184 1.53727 1.18790 1.20862 0.88160 0.92192 0.96001 1.22229 0.95801 0.99088 1.00562 1.21246 0.90142 0.94378 0.93607 1.46106 1.26499 1.14790 1.48998 1.20341 0.81358 0.87233 0.80178 1.90680 1.74071 1.17440 1.62902 1.22265 0.98171 0.97197 0.99698 0.82173 1.22687 0.90781 0.97159 1.04660 1.22421 0.98856 0.88387 0.92541 1.46182 1.08685 1.39065 1.43327 1.20607 0.84078 0.83478 0.81378 1.90796 1.71069 1.45810 1.36853 1.20137 0.99212 0.92044 0.82690 1.21859 0.94695 1.00905 0.97652 1.21604 0.96345 0.96773 0.95064 1.22362 1.02198 0.97959 0.96686 1.23134 0.87583 0.97528 0.99337 1.67660 1.21104 1.17703 1.14966 1.22752 0.99993 0.92487 0.91265 0.92781 0.91927 0.93510 0.92359 0.92104 0.91835 0.91628 0.75400 0.90062 0.85924 0.87607 0.87645 0.73847 0.91055 0.93760 0.87134 0.82998 0.79959 0.81871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.54 13.97 21.65 0.30 -53.24 16 2 C 0.01 0.48 4.96 84.86 0.42 0.90 16 3 Si 0.89 42.55 26.24 68.60 1.80 44.35 16 4 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 6 H -0.24 -10.64 6.04 99.48 0.60 -10.04 16 7 C -0.26 -13.99 9.78 84.03 0.82 -13.16 16 8 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 9 N -0.60 -26.22 2.12 -706.33 -1.50 -27.72 16 10 C 0.15 5.60 5.69 86.38 0.49 6.09 16 11 C -0.14 -4.43 5.65 30.60 0.17 -4.26 16 12 C 0.13 3.76 5.67 86.38 0.49 4.25 16 13 N -0.71 -19.08 5.29 -463.07 -2.45 -21.53 16 14 C 0.52 13.41 7.12 87.66 0.62 14.04 16 15 O -0.57 -18.01 15.49 -3.02 -0.05 -18.06 16 16 C -0.15 -2.47 3.32 -11.55 -0.04 -2.50 16 17 H 0.16 1.79 8.14 -2.38 -0.02 1.77 16 18 C -0.11 -1.17 6.48 31.65 0.21 -0.97 16 19 C 0.10 0.51 7.78 86.83 0.68 1.19 16 20 N -0.72 -8.39 6.24 -459.81 -2.87 -11.26 16 21 C 0.52 10.43 7.85 87.90 0.69 11.12 16 22 O -0.57 -16.51 17.16 -3.03 -0.05 -16.56 16 23 C 0.19 7.52 4.21 85.63 0.36 7.88 16 24 C -0.15 -5.60 5.48 -19.77 -0.11 -5.71 16 25 C -0.07 -2.77 9.88 22.47 0.22 -2.55 16 26 C -0.17 -5.45 10.11 22.36 0.23 -5.22 16 27 C 0.08 2.39 11.18 84.69 0.95 3.33 16 28 N -0.51 -16.81 10.36 -195.84 -2.03 -18.84 16 29 C 0.09 3.12 10.84 84.67 0.92 4.04 16 30 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 32 H 0.05 1.77 8.04 -2.39 -0.02 1.75 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.41 10.43 7.99 -92.71 -0.74 9.69 16 38 H 0.08 1.23 7.00 -2.39 -0.02 1.22 16 39 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.42 3.76 8.96 -92.71 -0.83 2.92 16 43 H 0.07 2.55 8.02 -2.39 -0.02 2.53 16 44 H 0.04 1.98 4.31 -2.39 -0.01 1.96 16 45 H 0.11 4.94 8.06 -2.92 -0.02 4.92 16 46 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 47 H 0.18 3.87 8.06 -2.91 -0.02 3.85 16 48 H 0.16 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -75.44 399.28 -0.40 -75.84 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.69 Total: 28.55 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 7.12 Total: 18.46 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -8.54 Total: -132.59 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.10 Total: -34.62 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.80 Total: 44.35 kcal Total: -75.44 -0.40 -75.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230811383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.247 kcal (2) G-P(sol) polarization free energy of solvation -75.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds