Wall clock time and date at job start Sat Apr 11 2020 07:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99363 * 2 1 4 4 H 1.48504 * 109.47490 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46814 * 120.00196 * 3 2 1 6 6 H 1.48501 * 109.47123 * 240.00096 * 3 2 1 7 7 C 1.38806 * 120.00692 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 199.33557 * 7 2 1 9 9 N 1.36939 * 119.99744 * 19.32767 * 7 2 1 10 10 C 1.46501 * 120.00088 * 217.17727 * 9 7 2 11 11 C 1.52994 * 109.47303 * 85.00984 * 10 9 7 12 12 C 1.53002 * 109.47301 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47097 * 180.02562 * 12 11 10 14 14 C 1.34778 * 119.99716 * 180.02562 * 13 12 11 15 15 O 1.21277 * 120.00149 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99840 * 179.97438 * 14 13 12 17 17 H 1.09003 * 115.55159 * 275.95003 * 16 14 13 18 18 C 1.52997 * 117.49478 * 61.62520 * 16 14 13 19 19 C 1.52988 * 60.00100 * 107.48643 * 18 16 14 20 20 H 1.09004 * 117.50087 * 107.48653 * 19 18 16 21 21 C 1.50701 * 117.49776 * 252.50745 * 19 18 16 22 22 N 1.34778 * 119.99991 * 159.42860 * 21 19 18 23 23 O 1.21273 * 120.00069 * 339.42528 * 21 19 18 24 24 C 1.46499 * 120.00058 * 37.17718 * 9 7 2 25 25 C 1.50699 * 109.47482 * 89.99555 * 24 9 7 26 26 C 1.38668 * 120.42006 * 269.72527 * 25 24 9 27 27 C 1.38632 * 118.42100 * 179.77620 * 26 25 24 28 28 C 1.38229 * 119.15899 * 0.51520 * 27 26 25 29 29 N 1.31860 * 120.76229 * 359.72366 * 28 27 26 30 30 C 1.31879 * 121.72662 * 0.02562 * 29 28 27 31 31 H 0.96994 * 120.00753 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47022 * 205.00951 * 10 9 7 33 33 H 1.09000 * 109.46720 * 325.00859 * 10 9 7 34 34 H 1.09003 * 109.47573 * 300.00457 * 11 10 9 35 35 H 1.09010 * 109.47231 * 60.00090 * 11 10 9 36 36 H 1.08998 * 109.47003 * 299.99955 * 12 11 10 37 37 H 1.09000 * 109.46740 * 59.99863 * 12 11 10 38 38 H 0.96995 * 120.00228 * 359.97438 * 13 12 11 39 39 H 1.09008 * 117.49334 * 214.97720 * 18 16 14 40 40 H 1.09005 * 117.50301 * 359.96882 * 18 16 14 41 41 H 0.97001 * 120.00221 * 359.97438 * 22 21 19 42 42 H 0.96995 * 120.00114 * 180.02562 * 22 21 19 43 43 H 1.09005 * 109.47098 * 210.00022 * 24 9 7 44 44 H 1.09008 * 109.47303 * 329.99851 * 24 9 7 45 45 H 1.07994 * 120.79321 * 0.02562 * 26 25 24 46 46 H 1.07997 * 120.42252 * 180.21608 * 27 26 25 47 47 H 1.08002 * 119.62091 * 179.74390 * 28 27 26 48 48 H 1.08003 * 119.61644 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1038 1.6966 -1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0447 -1.2284 0.3091 9 7 1.3837 -2.3544 -0.3936 10 6 1.6795 -3.6177 0.2866 11 6 0.8044 -3.7417 1.5355 12 6 1.1139 -5.0608 2.2462 13 7 0.2755 -5.1797 3.4417 14 6 0.3768 -6.2681 4.2302 15 8 1.1616 -7.1492 3.9498 16 6 -0.4852 -6.3902 5.4603 17 1 -0.1058 -5.8908 6.3518 18 6 -2.0017 -6.4222 5.2599 19 6 -1.2554 -7.6976 5.6562 20 1 -1.3827 -8.0586 6.6768 21 6 -1.0940 -8.7646 4.6044 22 7 -0.1279 -9.6958 4.7318 23 8 -1.8333 -8.7855 3.6433 24 6 0.4173 -2.3239 -1.4942 25 6 1.1330 -2.5669 -2.7980 26 6 1.6379 -1.5033 -3.5306 27 6 2.2931 -1.7746 -4.7218 28 6 2.4109 -3.0862 -5.1421 29 7 1.9138 -4.0724 -4.4218 30 6 1.2890 -3.8519 -3.2815 31 1 -0.4851 0.8399 0.0004 32 1 1.4723 -4.4498 -0.3862 33 1 2.7303 -3.6372 0.5758 34 1 1.0115 -2.9096 2.2084 35 1 -0.2464 -3.7222 1.2463 36 1 0.9070 -5.8932 1.5736 37 1 2.1646 -5.0799 2.5354 38 1 -0.3519 -4.4749 3.6662 39 1 -2.6199 -5.9441 6.0198 40 1 -2.3759 -6.3544 4.2383 41 1 0.4637 -9.6789 5.5004 42 1 -0.0237 -10.3824 4.0546 43 1 -0.3324 -3.1002 -1.3411 44 1 -0.0697 -1.3491 -1.5233 45 1 1.5271 -0.4880 -3.1796 46 1 2.7020 -0.9711 -5.3164 47 1 2.9162 -3.3057 -6.0711 48 1 0.8954 -4.6855 -2.7187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230849831.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:25 Heat of formation + Delta-G solvation = -2.118067 kcal Electronic energy + Delta-G solvation = -29641.453226 eV Core-core repulsion = 25504.400167 eV Total energy + Delta-G solvation = -4137.053059 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.54884 -39.47070 -38.92918 -36.53197 -36.08076 -34.89784 -33.64737 -32.18766 -31.99759 -31.18770 -29.66743 -26.29020 -25.84077 -24.78631 -23.92391 -22.84412 -22.37236 -21.31636 -20.69928 -20.23960 -19.57944 -17.94230 -17.14077 -17.01483 -16.40010 -16.16850 -16.13205 -15.75833 -15.56834 -15.01562 -14.82677 -14.43785 -14.26458 -14.10591 -13.91599 -13.58893 -13.38650 -13.08417 -12.91171 -12.85471 -12.35964 -12.32817 -12.08515 -11.72494 -11.21512 -11.13825 -11.10881 -10.99892 -10.91225 -10.80561 -10.51654 -10.28936 -10.19007 -10.13206 -9.91730 -9.79152 -9.69196 -9.11886 -8.91305 -8.88823 -8.65278 -8.31919 -6.76495 -5.95301 -3.53341 1.73752 1.95712 2.36567 2.59725 3.02932 3.25620 3.32508 3.34776 3.38102 3.48960 4.31321 4.36472 4.45294 4.46208 4.52066 4.86966 4.98280 4.98466 5.17321 5.26960 5.36952 5.39885 5.41921 5.55293 5.65930 5.68725 5.74214 5.80849 5.83136 5.95527 6.10482 6.13765 6.23661 6.40917 6.44746 6.56059 6.62904 6.68247 6.77694 6.84314 7.02072 7.13778 7.24064 7.35281 7.51469 7.58667 7.67706 8.17384 8.24110 8.35829 8.53345 9.01021 9.62419 10.20334 11.04512 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.002495 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.634622 B =11220.985633 C =13021.825800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.015 3.985 3 Si 0.894 3.106 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.257 4.257 8 H 0.061 0.939 9 N -0.572 5.572 10 C 0.153 3.847 11 C -0.143 4.143 12 C 0.119 3.881 13 N -0.715 5.715 14 C 0.534 3.466 15 O -0.537 6.537 16 C -0.163 4.163 17 H 0.142 0.858 18 C -0.132 4.132 19 C -0.166 4.166 20 H 0.136 0.864 21 C 0.552 3.448 22 N -0.837 5.837 23 O -0.545 6.545 24 C 0.174 3.826 25 C -0.118 4.118 26 C -0.060 4.060 27 C -0.178 4.178 28 C 0.068 3.932 29 N -0.494 5.494 30 C 0.087 3.913 31 H 0.257 0.743 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.403 0.597 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.402 0.598 42 H 0.401 0.599 43 H 0.038 0.962 44 H 0.110 0.890 45 H 0.129 0.871 46 H 0.122 0.878 47 H 0.142 0.858 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.784 -10.087 8.968 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.186 4.186 3 Si 0.723 3.277 4 H -0.215 1.215 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.078 0.922 9 N -0.291 5.291 10 C 0.026 3.974 11 C -0.184 4.184 12 C -0.004 4.004 13 N -0.366 5.366 14 C 0.319 3.681 15 O -0.414 6.414 16 C -0.185 4.185 17 H 0.159 0.841 18 C -0.169 4.169 19 C -0.187 4.187 20 H 0.154 0.846 21 C 0.336 3.664 22 N -0.398 5.398 23 O -0.422 6.422 24 C 0.048 3.952 25 C -0.123 4.123 26 C -0.087 4.087 27 C -0.198 4.198 28 C -0.089 4.089 29 N -0.203 5.203 30 C -0.070 4.070 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.237 0.763 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.230 0.770 42 H 0.232 0.768 43 H 0.056 0.944 44 H 0.127 0.873 45 H 0.147 0.853 46 H 0.140 0.860 47 H 0.160 0.840 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.802 -11.280 7.932 13.907 hybrid contribution 0.601 1.940 0.676 2.141 sum -1.200 -9.340 8.608 12.758 Atomic orbital electron populations 1.69902 1.05430 1.26049 1.51239 1.25148 0.95033 0.98567 0.99808 0.86510 0.79294 0.83335 0.78537 1.21464 1.20608 1.20771 1.19016 0.93368 0.85222 1.41038 0.92177 1.43721 1.49558 1.03848 1.31930 1.20808 0.96560 0.88817 0.91221 1.22406 1.01873 0.94418 0.99660 1.21526 0.94282 0.99333 0.85286 1.46075 1.42418 1.21645 1.26437 1.19573 0.82978 0.82200 0.83364 1.90702 1.38103 1.39850 1.72778 1.22347 0.95186 1.01023 0.99903 0.84060 1.23122 0.92020 0.96816 1.04981 1.22236 1.06568 0.89323 1.00611 0.84620 1.19427 0.79826 0.81460 0.85694 1.43565 1.35314 1.32189 1.28760 1.90752 1.45028 1.74193 1.32186 1.20048 0.90040 1.03804 0.81335 1.22238 0.98508 0.93256 0.98297 1.21529 0.94293 1.00122 0.92736 1.22065 1.01619 0.97988 0.98157 1.22439 0.98551 0.88907 0.99047 1.67543 1.09405 1.36463 1.06864 1.22581 0.96216 0.96008 0.92222 0.93256 0.94189 0.93894 0.90917 0.91949 0.92049 0.91858 0.76261 0.86682 0.86879 0.77022 0.76831 0.94376 0.87287 0.85259 0.85962 0.84039 0.83914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.86 11.31 55.49 0.63 -22.23 16 2 C 0.02 0.38 5.01 -17.43 -0.09 0.29 16 3 Si 0.89 20.01 29.60 -169.99 -5.03 14.98 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.26 -6.36 9.48 -15.06 -0.14 -6.51 16 8 H 0.06 1.53 7.90 -52.49 -0.41 1.12 16 9 N -0.57 -12.78 2.42 -174.61 -0.42 -13.20 16 10 C 0.15 2.93 5.67 -4.04 -0.02 2.90 16 11 C -0.14 -2.45 5.63 -26.73 -0.15 -2.60 16 12 C 0.12 1.81 5.67 -4.04 -0.02 1.79 16 13 N -0.72 -9.50 5.56 -60.29 -0.33 -9.84 16 14 C 0.53 7.17 6.84 -10.98 -0.08 7.10 16 15 O -0.54 -8.83 15.70 5.56 0.09 -8.74 16 16 C -0.16 -1.49 6.13 -91.77 -0.56 -2.05 16 17 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 18 C -0.13 -1.12 9.74 -26.74 -0.26 -1.38 16 19 C -0.17 -1.46 6.18 -91.78 -0.57 -2.03 16 20 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 21 C 0.55 6.76 6.11 -10.98 -0.07 6.69 16 22 N -0.84 -7.69 8.59 31.22 0.27 -7.42 16 23 O -0.54 -9.09 17.30 5.56 0.10 -8.99 16 24 C 0.17 3.74 5.41 -5.19 -0.03 3.71 16 25 C -0.12 -2.34 5.48 -104.48 -0.57 -2.91 16 26 C -0.06 -1.15 9.86 -39.28 -0.39 -1.54 16 27 C -0.18 -2.95 10.11 -39.44 -0.40 -3.34 16 28 C 0.07 1.12 11.18 -17.54 -0.20 0.92 16 29 N -0.49 -9.13 10.36 -13.25 -0.14 -9.27 16 30 C 0.09 1.63 10.86 -17.55 -0.19 1.44 16 31 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 32 H 0.04 0.72 8.03 -51.93 -0.42 0.30 16 33 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.40 4.62 8.47 -40.82 -0.35 4.28 16 39 H 0.11 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.11 1.22 7.82 -51.93 -0.41 0.81 16 41 H 0.40 2.61 8.83 -40.82 -0.36 2.25 16 42 H 0.40 3.47 8.93 -40.82 -0.36 3.11 16 43 H 0.04 0.77 8.02 -51.93 -0.42 0.36 16 44 H 0.11 2.64 5.35 -51.92 -0.28 2.36 16 45 H 0.13 2.57 8.06 -52.49 -0.42 2.15 16 46 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 47 H 0.14 1.86 8.06 -52.49 -0.42 1.43 16 48 H 0.14 2.44 8.06 -52.48 -0.42 2.02 16 LS Contribution 410.52 15.07 6.19 6.19 Total: -1.00 -32.57 410.52 -9.60 -42.17 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -7.21 Total: 13.89 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -3.73 Total: 2.48 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: 0.00 Total: -61.96 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.18 Total: -17.74 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.57 -9.60 -42.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230849831.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.054 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds