Wall clock time and date at job start Sat Apr 11 2020 07:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99363 * 2 1 4 4 H 1.48504 * 109.47490 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46814 * 120.00196 * 3 2 1 6 6 H 1.48501 * 109.47123 * 240.00096 * 3 2 1 7 7 C 1.38806 * 120.00692 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 199.33557 * 7 2 1 9 9 N 1.36939 * 119.99744 * 19.32767 * 7 2 1 10 10 C 1.46501 * 120.00088 * 217.17727 * 9 7 2 11 11 C 1.52994 * 109.47303 * 85.00984 * 10 9 7 12 12 C 1.53002 * 109.47301 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47097 * 180.02562 * 12 11 10 14 14 C 1.34778 * 119.99716 * 180.02562 * 13 12 11 15 15 O 1.21277 * 120.00149 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99840 * 179.97438 * 14 13 12 17 17 H 1.09003 * 115.55159 * 275.95003 * 16 14 13 18 18 C 1.52997 * 117.49478 * 61.62520 * 16 14 13 19 19 C 1.52988 * 60.00100 * 107.48643 * 18 16 14 20 20 H 1.09004 * 117.50087 * 107.48653 * 19 18 16 21 21 C 1.50701 * 117.49776 * 252.50745 * 19 18 16 22 22 N 1.34778 * 119.99991 * 159.42860 * 21 19 18 23 23 O 1.21273 * 120.00069 * 339.42528 * 21 19 18 24 24 C 1.46499 * 120.00058 * 37.17718 * 9 7 2 25 25 C 1.50699 * 109.47482 * 89.99555 * 24 9 7 26 26 C 1.38668 * 120.42006 * 269.72527 * 25 24 9 27 27 C 1.38632 * 118.42100 * 179.77620 * 26 25 24 28 28 C 1.38229 * 119.15899 * 0.51520 * 27 26 25 29 29 N 1.31860 * 120.76229 * 359.72366 * 28 27 26 30 30 C 1.31879 * 121.72662 * 0.02562 * 29 28 27 31 31 H 0.96994 * 120.00753 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47022 * 205.00951 * 10 9 7 33 33 H 1.09000 * 109.46720 * 325.00859 * 10 9 7 34 34 H 1.09003 * 109.47573 * 300.00457 * 11 10 9 35 35 H 1.09010 * 109.47231 * 60.00090 * 11 10 9 36 36 H 1.08998 * 109.47003 * 299.99955 * 12 11 10 37 37 H 1.09000 * 109.46740 * 59.99863 * 12 11 10 38 38 H 0.96995 * 120.00228 * 359.97438 * 13 12 11 39 39 H 1.09008 * 117.49334 * 214.97720 * 18 16 14 40 40 H 1.09005 * 117.50301 * 359.96882 * 18 16 14 41 41 H 0.97001 * 120.00221 * 359.97438 * 22 21 19 42 42 H 0.96995 * 120.00114 * 180.02562 * 22 21 19 43 43 H 1.09005 * 109.47098 * 210.00022 * 24 9 7 44 44 H 1.09008 * 109.47303 * 329.99851 * 24 9 7 45 45 H 1.07994 * 120.79321 * 0.02562 * 26 25 24 46 46 H 1.07997 * 120.42252 * 180.21608 * 27 26 25 47 47 H 1.08002 * 119.62091 * 179.74390 * 28 27 26 48 48 H 1.08003 * 119.61644 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1038 1.6966 -1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0447 -1.2284 0.3091 9 7 1.3837 -2.3544 -0.3936 10 6 1.6795 -3.6177 0.2866 11 6 0.8044 -3.7417 1.5355 12 6 1.1139 -5.0608 2.2462 13 7 0.2755 -5.1797 3.4417 14 6 0.3768 -6.2681 4.2302 15 8 1.1616 -7.1492 3.9498 16 6 -0.4852 -6.3902 5.4603 17 1 -0.1058 -5.8908 6.3518 18 6 -2.0017 -6.4222 5.2599 19 6 -1.2554 -7.6976 5.6562 20 1 -1.3827 -8.0586 6.6768 21 6 -1.0940 -8.7646 4.6044 22 7 -0.1279 -9.6958 4.7318 23 8 -1.8333 -8.7855 3.6433 24 6 0.4173 -2.3239 -1.4942 25 6 1.1330 -2.5669 -2.7980 26 6 1.6379 -1.5033 -3.5306 27 6 2.2931 -1.7746 -4.7218 28 6 2.4109 -3.0862 -5.1421 29 7 1.9138 -4.0724 -4.4218 30 6 1.2890 -3.8519 -3.2815 31 1 -0.4851 0.8399 0.0004 32 1 1.4723 -4.4498 -0.3862 33 1 2.7303 -3.6372 0.5758 34 1 1.0115 -2.9096 2.2084 35 1 -0.2464 -3.7222 1.2463 36 1 0.9070 -5.8932 1.5736 37 1 2.1646 -5.0799 2.5354 38 1 -0.3519 -4.4749 3.6662 39 1 -2.6199 -5.9441 6.0198 40 1 -2.3759 -6.3544 4.2383 41 1 0.4637 -9.6789 5.5004 42 1 -0.0237 -10.3824 4.0546 43 1 -0.3324 -3.1002 -1.3411 44 1 -0.0697 -1.3491 -1.5233 45 1 1.5271 -0.4880 -3.1796 46 1 2.7020 -0.9711 -5.3164 47 1 2.9162 -3.3057 -6.0711 48 1 0.8954 -4.6855 -2.7187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230849831.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:24 Heat of formation + Delta-G solvation = -25.455760 kcal Electronic energy + Delta-G solvation = -29642.465224 eV Core-core repulsion = 25504.400167 eV Total energy + Delta-G solvation = -4138.065057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.47943 -40.90633 -39.98446 -38.06283 -37.00038 -36.23111 -34.54154 -33.77204 -33.61615 -32.59579 -31.20548 -27.64203 -27.49238 -25.81698 -24.92702 -24.28967 -23.76279 -22.74368 -21.91333 -21.43732 -20.64179 -18.83759 -18.78928 -17.95199 -17.79650 -17.30563 -17.09707 -17.06507 -16.81852 -16.54894 -16.28286 -15.86445 -15.59147 -15.39644 -15.04692 -14.96164 -14.65500 -14.37909 -14.31966 -14.12446 -13.84305 -13.55421 -13.34364 -13.05427 -12.89898 -12.79688 -12.54858 -12.42895 -12.21959 -12.12642 -11.86754 -11.67967 -11.65152 -11.50090 -11.15315 -10.83787 -10.60060 -10.58645 -10.54190 -10.30154 -10.09280 -9.76325 -8.59671 -7.83845 -5.45603 0.33926 0.49624 1.45721 1.47118 1.49548 1.54477 1.58583 2.11499 2.49580 2.56898 2.74218 2.98952 3.26278 3.66428 3.67390 3.70012 3.72050 3.75312 4.09780 4.10671 4.14034 4.18296 4.27120 4.30783 4.36109 4.38611 4.52287 4.63599 4.70186 4.78248 4.83567 4.87801 4.91155 4.96363 5.03657 5.07978 5.31925 5.32699 5.39611 5.50717 5.56080 5.71293 5.78809 5.88564 5.94365 6.46915 6.48434 6.52804 7.12738 7.14477 7.19101 7.35422 7.80796 8.35065 9.12365 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.002495 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.634622 B =11220.985633 C =13021.825800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.019 4.019 3 Si 0.944 3.056 4 H -0.291 1.291 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.263 4.263 8 H 0.050 0.950 9 N -0.584 5.584 10 C 0.150 3.850 11 C -0.121 4.121 12 C 0.133 3.867 13 N -0.714 5.714 14 C 0.524 3.476 15 O -0.572 6.572 16 C -0.157 4.157 17 H 0.179 0.821 18 C -0.128 4.128 19 C -0.163 4.163 20 H 0.180 0.820 21 C 0.537 3.463 22 N -0.824 5.824 23 O -0.601 6.601 24 C 0.182 3.818 25 C -0.134 4.134 26 C -0.078 4.078 27 C -0.170 4.170 28 C 0.073 3.927 29 N -0.507 5.507 30 C 0.083 3.917 31 H 0.253 0.747 32 H 0.051 0.949 33 H 0.039 0.961 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.412 0.588 39 H 0.153 0.847 40 H 0.083 0.917 41 H 0.416 0.584 42 H 0.402 0.598 43 H 0.040 0.960 44 H 0.082 0.918 45 H 0.114 0.886 46 H 0.157 0.843 47 H 0.182 0.818 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 -10.358 9.674 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.218 4.218 3 Si 0.773 3.227 4 H -0.217 1.217 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.393 4.393 8 H 0.067 0.933 9 N -0.303 5.303 10 C 0.024 3.976 11 C -0.161 4.161 12 C 0.009 3.991 13 N -0.365 5.365 14 C 0.311 3.689 15 O -0.452 6.452 16 C -0.178 4.178 17 H 0.196 0.804 18 C -0.165 4.165 19 C -0.184 4.184 20 H 0.197 0.803 21 C 0.323 3.677 22 N -0.385 5.385 23 O -0.483 6.483 24 C 0.056 3.944 25 C -0.139 4.139 26 C -0.105 4.105 27 C -0.189 4.189 28 C -0.084 4.084 29 N -0.216 5.216 30 C -0.074 4.074 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.248 0.752 39 H 0.170 0.830 40 H 0.101 0.899 41 H 0.247 0.753 42 H 0.232 0.768 43 H 0.059 0.941 44 H 0.100 0.900 45 H 0.132 0.868 46 H 0.174 0.826 47 H 0.199 0.801 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.092 -11.570 8.675 14.503 hybrid contribution 0.450 1.945 0.350 2.026 sum -0.642 -9.626 9.025 13.211 Atomic orbital electron populations 1.70013 1.06348 1.26135 1.52459 1.25615 0.95522 1.00601 1.00023 0.85722 0.78170 0.80510 0.78329 1.21731 1.20503 1.20641 1.19081 0.93037 0.86403 1.40828 0.93265 1.43843 1.49459 1.04106 1.32900 1.20876 0.96663 0.88011 0.92042 1.22072 1.00679 0.94807 0.98538 1.21190 0.94452 0.97546 0.85918 1.46032 1.42282 1.22358 1.25869 1.20395 0.82939 0.81239 0.84300 1.90678 1.39776 1.40829 1.73873 1.22379 0.94856 1.01817 0.98756 0.80357 1.23221 0.91849 0.96894 1.04572 1.22439 1.06267 0.88247 1.01452 0.80320 1.20159 0.79447 0.82313 0.85809 1.43544 1.34536 1.31339 1.29072 1.90722 1.47204 1.75768 1.34606 1.19812 0.90064 1.02273 0.82260 1.22038 0.99546 0.94234 0.98060 1.21578 0.95421 0.99285 0.94186 1.22382 1.00206 0.99273 0.97041 1.23121 0.97180 0.88388 0.99746 1.67619 1.09784 1.37367 1.06827 1.22654 0.96379 0.95690 0.92634 0.93706 0.93034 0.94242 0.92698 0.92903 0.92966 0.92181 0.75181 0.82956 0.89855 0.75313 0.76756 0.94118 0.90028 0.86755 0.82565 0.80089 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.08 11.31 21.65 0.24 -47.84 16 2 C -0.02 -0.97 5.01 84.86 0.43 -0.55 16 3 Si 0.94 41.57 29.60 68.60 2.03 43.60 16 4 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.26 -13.34 9.48 84.03 0.80 -12.54 16 8 H 0.05 2.57 7.90 -2.91 -0.02 2.54 16 9 N -0.58 -26.76 2.42 -706.35 -1.71 -28.47 16 10 C 0.15 5.88 5.67 86.38 0.49 6.37 16 11 C -0.12 -4.25 5.63 30.59 0.17 -4.08 16 12 C 0.13 4.12 5.67 86.38 0.49 4.61 16 13 N -0.71 -18.90 5.56 -463.06 -2.57 -21.48 16 14 C 0.52 13.69 6.84 87.66 0.60 14.29 16 15 O -0.57 -18.66 15.70 -3.02 -0.05 -18.71 16 16 C -0.16 -2.46 6.13 -11.54 -0.07 -2.53 16 17 H 0.18 1.52 8.14 -2.39 -0.02 1.50 16 18 C -0.13 -1.88 9.74 30.59 0.30 -1.58 16 19 C -0.16 -2.45 6.18 -11.55 -0.07 -2.52 16 20 H 0.18 1.11 8.14 -2.38 -0.02 1.09 16 21 C 0.54 12.84 6.11 87.66 0.54 13.37 16 22 N -0.82 -14.52 8.59 -173.54 -1.49 -16.01 16 23 O -0.60 -20.61 17.30 -3.01 -0.05 -20.67 16 24 C 0.18 8.07 5.41 85.63 0.46 8.53 16 25 C -0.13 -5.37 5.48 -19.77 -0.11 -5.47 16 26 C -0.08 -2.96 9.86 22.47 0.22 -2.74 16 27 C -0.17 -5.20 10.11 22.36 0.23 -4.98 16 28 C 0.07 2.18 11.18 84.69 0.95 3.13 16 29 N -0.51 -17.85 10.36 -195.83 -2.03 -19.88 16 30 C 0.08 3.07 10.86 84.67 0.92 3.99 16 31 H 0.25 13.16 8.31 -92.71 -0.77 12.39 16 32 H 0.05 1.87 8.03 -2.39 -0.02 1.85 16 33 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 34 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.05 1.95 8.14 -2.38 -0.02 1.94 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.41 9.33 8.47 -92.71 -0.79 8.55 16 39 H 0.15 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.08 1.78 7.82 -2.38 -0.02 1.76 16 41 H 0.42 4.75 8.83 -92.71 -0.82 3.93 16 42 H 0.40 6.92 8.93 -92.71 -0.83 6.09 16 43 H 0.04 1.71 8.02 -2.38 -0.02 1.69 16 44 H 0.08 4.11 5.35 -2.38 -0.01 4.10 16 45 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 46 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 47 H 0.18 3.93 8.06 -2.91 -0.02 3.91 16 48 H 0.15 5.16 8.06 -2.91 -0.02 5.13 16 Total: -1.00 -73.42 410.52 -0.72 -74.13 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: -1.42 Total: 38.01 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 6.34 Total: 17.30 kcal Atomic # 7 Polarization: -126.11 SS G_CDS: -7.56 Total: -133.67 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.10 Total: -39.37 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -73.42 -0.72 -74.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230849831.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.676 kcal (2) G-P(sol) polarization free energy of solvation -73.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds