Wall clock time and date at job start Sat Apr 11 2020 07:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00221 * 2 1 4 4 H 1.48503 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47206 * 299.99546 * 3 2 1 6 6 H 1.48498 * 109.47218 * 59.99845 * 3 2 1 7 7 C 1.38817 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00095 * 156.91826 * 7 2 1 9 9 N 1.36939 * 120.00038 * 336.92537 * 7 2 1 10 10 C 1.46501 * 119.99982 * 145.54103 * 9 7 2 11 11 C 1.52996 * 109.46915 * 84.21365 * 10 9 7 12 12 C 1.53004 * 109.47136 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.46929 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99393 * 180.02562 * 13 12 11 15 15 O 1.21273 * 120.00768 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99702 * 180.02562 * 14 13 12 17 17 H 1.09001 * 110.22125 * 41.92291 * 16 14 13 18 18 C 1.54489 * 110.24251 * 279.99752 * 16 14 13 19 19 C 1.54630 * 101.76326 * 215.58293 * 18 16 14 20 20 C 1.51284 * 104.19543 * 24.79967 * 19 18 16 21 21 O 1.21278 * 124.93979 * 163.78423 * 20 19 18 22 22 N 1.34416 * 110.11825 * 343.74465 * 20 19 18 23 23 C 1.46498 * 119.99685 * 325.54327 * 9 7 2 24 24 C 1.50696 * 109.47103 * 269.99644 * 23 9 7 25 25 C 1.38678 * 120.42266 * 269.72424 * 24 23 9 26 26 C 1.38624 * 118.41833 * 179.78389 * 25 24 23 27 27 C 1.38227 * 119.16350 * 0.51047 * 26 25 24 28 28 N 1.31849 * 120.76520 * 359.72916 * 27 26 25 29 29 C 1.31887 * 121.72611 * 359.97438 * 28 27 26 30 30 H 0.96997 * 119.99810 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47267 * 324.21256 * 10 9 7 32 32 H 1.09003 * 109.46840 * 204.21447 * 10 9 7 33 33 H 1.09003 * 109.47242 * 59.99876 * 11 10 9 34 34 H 1.08997 * 109.47721 * 300.00009 * 11 10 9 35 35 H 1.08994 * 109.47209 * 59.99789 * 12 11 10 36 36 H 1.09003 * 109.46872 * 300.00238 * 12 11 10 37 37 H 0.97000 * 120.00451 * 0.02562 * 13 12 11 38 38 H 1.08992 * 110.96828 * 333.70449 * 18 16 14 39 39 H 1.09005 * 110.96625 * 97.43176 * 18 16 14 40 40 H 1.09006 * 110.48386 * 143.47605 * 19 18 16 41 41 H 1.08997 * 110.48703 * 266.11860 * 19 18 16 42 42 H 0.96998 * 124.35632 * 179.58942 * 22 20 19 43 43 H 1.09000 * 109.47486 * 30.00264 * 23 9 7 44 44 H 1.09003 * 109.46968 * 149.99859 * 23 9 7 45 45 H 1.08004 * 120.78354 * 0.02562 * 25 24 23 46 46 H 1.08001 * 120.41412 * 180.22271 * 26 25 24 47 47 H 1.08005 * 119.61680 * 179.74573 * 27 26 25 48 48 H 1.07995 * 119.61848 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0255 -1.2398 -0.3661 9 7 1.4078 -2.3405 0.4658 10 6 1.7116 -3.6344 -0.1504 11 6 2.9854 -4.2093 0.4723 12 6 3.3023 -5.5609 -0.1708 13 7 4.5217 -6.1116 0.4259 14 6 4.9958 -7.3032 0.0115 15 8 4.4129 -7.9198 -0.8549 16 6 6.2498 -7.8701 0.6258 17 1 6.2442 -7.7151 1.7047 18 6 7.4978 -7.2109 -0.0024 19 6 8.4973 -8.3904 -0.0298 20 6 7.6181 -9.6214 -0.0488 21 8 7.9898 -10.7359 -0.3496 22 7 6.3651 -9.3002 0.3169 23 6 0.4594 -2.2643 1.5798 24 6 1.2002 -2.4262 2.8821 25 6 1.3797 -3.6848 3.4361 26 6 2.0714 -3.7862 4.6331 27 6 2.5464 -2.6366 5.2360 28 7 2.3528 -1.4555 4.6829 29 6 1.7045 -1.3218 3.5421 30 1 -0.4850 0.8400 -0.0004 31 1 1.8594 -3.5007 -1.2221 32 1 0.8823 -4.3212 0.0191 33 1 2.8376 -4.3429 1.5440 34 1 3.8146 -3.5225 0.3029 35 1 3.4499 -5.4277 -1.2424 36 1 2.4729 -6.2475 -0.0009 37 1 4.9878 -5.6187 1.1192 38 1 7.2856 -6.8559 -1.0108 39 1 7.8679 -6.3998 0.6248 40 1 9.1133 -8.3476 -0.9281 41 1 9.1222 -8.3817 0.8632 42 1 5.6313 -9.9324 0.3697 43 1 -0.0418 -1.2965 1.5648 44 1 -0.2809 -3.0583 1.4817 45 1 0.9933 -4.5654 2.9444 46 1 2.2330 -4.7508 5.0913 47 1 3.0827 -2.7067 6.1709 48 1 1.5657 -0.3379 3.1192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230905500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:28 Heat of formation + Delta-G solvation = -20.156905 kcal Electronic energy + Delta-G solvation = -29975.378188 eV Core-core repulsion = 25837.542907 eV Total energy + Delta-G solvation = -4137.835281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.07352 -39.59921 -39.29368 -36.74741 -36.34229 -35.12350 -32.37392 -32.24581 -31.68265 -31.23443 -30.08165 -28.49506 -25.99576 -25.42551 -23.26123 -22.95358 -22.46930 -21.34108 -20.97620 -20.76880 -20.21043 -18.04214 -17.58377 -16.98546 -16.58581 -16.23327 -15.95428 -15.72705 -15.60465 -15.12264 -14.83727 -14.48538 -14.37354 -14.05065 -14.00254 -13.62451 -13.49547 -13.47156 -13.13435 -13.08565 -12.87761 -12.59546 -12.36816 -12.17900 -11.87509 -11.61009 -11.39156 -11.24617 -11.13898 -10.86899 -10.71991 -10.35942 -10.26519 -10.20136 -10.17386 -10.06876 -9.44419 -9.26254 -9.16949 -8.97538 -8.65593 -8.35216 -6.85420 -6.00097 -3.54061 1.66516 1.80032 2.22146 2.27158 2.71498 3.18185 3.25288 3.36068 3.37803 3.88549 3.95401 4.26478 4.29116 4.39421 4.47930 4.60715 4.90772 4.95251 5.05931 5.15078 5.20587 5.22175 5.30320 5.31253 5.44793 5.45046 5.57415 5.62595 5.70561 5.75478 5.94223 5.99473 6.06608 6.27392 6.29632 6.34330 6.39573 6.48794 6.61979 6.62339 6.64825 6.85008 6.95248 7.25176 7.27758 7.45870 7.64471 7.86716 7.96764 8.28165 8.51058 8.95838 9.58754 10.13800 11.00525 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.002499 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.770789 B =11200.463369 C =12172.664835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.014 3.986 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.260 4.260 8 H 0.063 0.937 9 N -0.572 5.572 10 C 0.152 3.848 11 C -0.153 4.153 12 C 0.120 3.880 13 N -0.719 5.719 14 C 0.501 3.499 15 O -0.531 6.531 16 C 0.112 3.888 17 H 0.107 0.893 18 C -0.122 4.122 19 C -0.155 4.155 20 C 0.523 3.477 21 O -0.533 6.533 22 N -0.709 5.709 23 C 0.172 3.828 24 C -0.116 4.116 25 C -0.083 4.083 26 C -0.182 4.182 27 C 0.069 3.931 28 N -0.491 5.491 29 C 0.112 3.888 30 H 0.258 0.742 31 H 0.051 0.949 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.402 0.598 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.416 0.584 43 H 0.111 0.889 44 H 0.037 0.963 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.141 0.859 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.936 -10.890 6.279 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.187 4.187 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.389 4.389 8 H 0.081 0.919 9 N -0.289 5.289 10 C 0.025 3.975 11 C -0.193 4.193 12 C -0.004 4.004 13 N -0.370 5.370 14 C 0.285 3.715 15 O -0.408 6.408 16 C 0.002 3.998 17 H 0.124 0.876 18 C -0.161 4.161 19 C -0.195 4.195 20 C 0.309 3.691 21 O -0.409 6.409 22 N -0.365 5.365 23 C 0.045 3.955 24 C -0.121 4.121 25 C -0.110 4.110 26 C -0.202 4.202 27 C -0.089 4.089 28 N -0.200 5.200 29 C -0.045 4.045 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.236 0.764 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.256 0.744 43 H 0.128 0.872 44 H 0.056 0.944 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.159 0.841 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.965 -10.940 5.818 15.901 hybrid contribution 0.025 0.144 0.108 0.182 sum 9.989 -10.796 5.926 15.857 Atomic orbital electron populations 1.69979 1.05575 1.26083 1.50600 1.25083 0.94948 0.98756 0.99899 0.86411 0.79967 0.83932 0.77660 1.19986 1.21505 1.21013 1.19035 0.95189 0.85938 1.38731 0.91913 1.43715 1.50961 1.02173 1.32095 1.20750 0.92862 0.87690 0.96236 1.22552 1.02329 0.93657 1.00794 1.21499 0.85326 0.95493 0.98049 1.46102 1.28597 1.20613 1.41710 1.20630 0.85865 0.81798 0.83231 1.90752 1.59366 1.59610 1.31027 1.21623 0.94862 0.82427 1.00849 0.87568 1.22632 0.92170 0.97964 1.03298 1.22376 0.98462 0.92633 1.06018 1.20838 0.83160 0.90031 0.75070 1.90772 1.77077 1.24478 1.48560 1.45944 1.12296 1.09001 1.69229 1.20095 0.90184 1.04097 0.81093 1.22252 0.98659 0.92906 0.98303 1.21427 0.97209 0.97593 0.94798 1.21956 1.01329 0.99459 0.97432 1.22474 0.98817 0.88192 0.99401 1.67636 1.13879 1.27000 1.11493 1.22691 0.92705 0.99467 0.89664 0.93226 0.93050 0.94193 0.91784 0.91539 0.91462 0.91710 0.76385 0.89185 0.87889 0.87482 0.87246 0.74430 0.87173 0.94437 0.86079 0.86177 0.84129 0.83190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.86 11.35 55.49 0.63 -22.23 16 2 C 0.01 0.35 4.94 -17.43 -0.09 0.26 16 3 Si 0.89 19.90 29.61 -169.99 -5.03 14.86 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.26 -6.24 9.47 -15.06 -0.14 -6.38 16 8 H 0.06 1.53 7.93 -52.48 -0.42 1.12 16 9 N -0.57 -12.12 2.44 -174.61 -0.43 -12.55 16 10 C 0.15 2.66 5.72 -4.04 -0.02 2.64 16 11 C -0.15 -2.15 5.62 -26.73 -0.15 -2.30 16 12 C 0.12 1.46 5.67 -4.04 -0.02 1.44 16 13 N -0.72 -6.92 5.56 -60.29 -0.33 -7.25 16 14 C 0.50 5.25 7.03 -10.98 -0.08 5.17 16 15 O -0.53 -7.93 16.54 5.56 0.09 -7.84 16 16 C 0.11 0.79 3.93 -68.15 -0.27 0.53 16 17 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 18 C -0.12 -0.66 6.68 -25.09 -0.17 -0.83 16 19 C -0.15 -0.95 6.86 -26.74 -0.18 -1.14 16 20 C 0.52 5.46 8.43 -10.86 -0.09 5.37 16 21 O -0.53 -7.86 18.03 5.56 0.10 -7.76 16 22 N -0.71 -6.52 5.46 -53.87 -0.29 -6.82 16 23 C 0.17 3.50 5.49 -5.20 -0.03 3.47 16 24 C -0.12 -2.10 5.46 -104.48 -0.57 -2.67 16 25 C -0.08 -1.26 8.07 -39.28 -0.32 -1.57 16 26 C -0.18 -2.43 10.11 -39.44 -0.40 -2.83 16 27 C 0.07 1.01 11.18 -17.55 -0.20 0.81 16 28 N -0.49 -8.85 10.36 -13.25 -0.14 -8.99 16 29 C 0.11 2.15 10.86 -17.55 -0.19 1.96 16 30 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 31 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 32 H 0.04 0.65 7.83 -51.93 -0.41 0.25 16 33 H 0.06 0.91 6.20 -51.93 -0.32 0.58 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.40 2.92 8.47 -40.82 -0.35 2.57 16 38 H 0.09 0.59 7.90 -51.93 -0.41 0.18 16 39 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.42 3.93 8.94 -40.82 -0.36 3.57 16 43 H 0.11 2.59 5.31 -51.93 -0.28 2.32 16 44 H 0.04 0.72 7.81 -51.93 -0.41 0.31 16 45 H 0.12 1.63 8.04 -52.48 -0.42 1.21 16 46 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 48 H 0.15 3.09 8.06 -52.49 -0.42 2.67 16 LS Contribution 402.19 15.07 6.06 6.06 Total: -1.00 -31.95 402.19 -9.41 -41.36 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.15 Total: 7.23 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -2.91 Total: 3.92 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.56 Total: -57.83 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.19 Total: -15.60 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.95 -9.41 -41.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230905500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.205 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds