Wall clock time and date at job start Sat Apr 11 2020 07:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00221 * 2 1 4 4 H 1.48503 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47206 * 299.99546 * 3 2 1 6 6 H 1.48498 * 109.47218 * 59.99845 * 3 2 1 7 7 C 1.38817 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00095 * 156.91826 * 7 2 1 9 9 N 1.36939 * 120.00038 * 336.92537 * 7 2 1 10 10 C 1.46501 * 119.99982 * 145.54103 * 9 7 2 11 11 C 1.52996 * 109.46915 * 84.21365 * 10 9 7 12 12 C 1.53004 * 109.47136 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.46929 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99393 * 180.02562 * 13 12 11 15 15 O 1.21273 * 120.00768 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99702 * 180.02562 * 14 13 12 17 17 H 1.09001 * 110.22125 * 41.92291 * 16 14 13 18 18 C 1.54489 * 110.24251 * 279.99752 * 16 14 13 19 19 C 1.54630 * 101.76326 * 215.58293 * 18 16 14 20 20 C 1.51284 * 104.19543 * 24.79967 * 19 18 16 21 21 O 1.21278 * 124.93979 * 163.78423 * 20 19 18 22 22 N 1.34416 * 110.11825 * 343.74465 * 20 19 18 23 23 C 1.46498 * 119.99685 * 325.54327 * 9 7 2 24 24 C 1.50696 * 109.47103 * 269.99644 * 23 9 7 25 25 C 1.38678 * 120.42266 * 269.72424 * 24 23 9 26 26 C 1.38624 * 118.41833 * 179.78389 * 25 24 23 27 27 C 1.38227 * 119.16350 * 0.51047 * 26 25 24 28 28 N 1.31849 * 120.76520 * 359.72916 * 27 26 25 29 29 C 1.31887 * 121.72611 * 359.97438 * 28 27 26 30 30 H 0.96997 * 119.99810 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47267 * 324.21256 * 10 9 7 32 32 H 1.09003 * 109.46840 * 204.21447 * 10 9 7 33 33 H 1.09003 * 109.47242 * 59.99876 * 11 10 9 34 34 H 1.08997 * 109.47721 * 300.00009 * 11 10 9 35 35 H 1.08994 * 109.47209 * 59.99789 * 12 11 10 36 36 H 1.09003 * 109.46872 * 300.00238 * 12 11 10 37 37 H 0.97000 * 120.00451 * 0.02562 * 13 12 11 38 38 H 1.08992 * 110.96828 * 333.70449 * 18 16 14 39 39 H 1.09005 * 110.96625 * 97.43176 * 18 16 14 40 40 H 1.09006 * 110.48386 * 143.47605 * 19 18 16 41 41 H 1.08997 * 110.48703 * 266.11860 * 19 18 16 42 42 H 0.96998 * 124.35632 * 179.58942 * 22 20 19 43 43 H 1.09000 * 109.47486 * 30.00264 * 23 9 7 44 44 H 1.09003 * 109.46968 * 149.99859 * 23 9 7 45 45 H 1.08004 * 120.78354 * 0.02562 * 25 24 23 46 46 H 1.08001 * 120.41412 * 180.22271 * 26 25 24 47 47 H 1.08005 * 119.61680 * 179.74573 * 27 26 25 48 48 H 1.07995 * 119.61848 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0255 -1.2398 -0.3661 9 7 1.4078 -2.3405 0.4658 10 6 1.7116 -3.6344 -0.1504 11 6 2.9854 -4.2093 0.4723 12 6 3.3023 -5.5609 -0.1708 13 7 4.5217 -6.1116 0.4259 14 6 4.9958 -7.3032 0.0115 15 8 4.4129 -7.9198 -0.8549 16 6 6.2498 -7.8701 0.6258 17 1 6.2442 -7.7151 1.7047 18 6 7.4978 -7.2109 -0.0024 19 6 8.4973 -8.3904 -0.0298 20 6 7.6181 -9.6214 -0.0488 21 8 7.9898 -10.7359 -0.3496 22 7 6.3651 -9.3002 0.3169 23 6 0.4594 -2.2643 1.5798 24 6 1.2002 -2.4262 2.8821 25 6 1.3797 -3.6848 3.4361 26 6 2.0714 -3.7862 4.6331 27 6 2.5464 -2.6366 5.2360 28 7 2.3528 -1.4555 4.6829 29 6 1.7045 -1.3218 3.5421 30 1 -0.4850 0.8400 -0.0004 31 1 1.8594 -3.5007 -1.2221 32 1 0.8823 -4.3212 0.0191 33 1 2.8376 -4.3429 1.5440 34 1 3.8146 -3.5225 0.3029 35 1 3.4499 -5.4277 -1.2424 36 1 2.4729 -6.2475 -0.0009 37 1 4.9878 -5.6187 1.1192 38 1 7.2856 -6.8559 -1.0108 39 1 7.8679 -6.3998 0.6248 40 1 9.1133 -8.3476 -0.9281 41 1 9.1222 -8.3817 0.8632 42 1 5.6313 -9.9324 0.3697 43 1 -0.0418 -1.2965 1.5648 44 1 -0.2809 -3.0583 1.4817 45 1 0.9933 -4.5654 2.9444 46 1 2.2330 -4.7508 5.0913 47 1 3.0827 -2.7067 6.1709 48 1 1.5657 -0.3379 3.1192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230905500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:28 Heat of formation + Delta-G solvation = -43.278497 kcal Electronic energy + Delta-G solvation = -29976.380816 eV Core-core repulsion = 25837.542907 eV Total energy + Delta-G solvation = -4138.837909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.80484 -40.88099 -40.17684 -38.06807 -37.28722 -36.25926 -33.93043 -33.51251 -32.56391 -32.25840 -31.37252 -29.34387 -27.57676 -26.74580 -24.31391 -24.21785 -23.38910 -22.52988 -22.06900 -21.61397 -21.28793 -18.85883 -18.69022 -18.23523 -17.79662 -17.28617 -16.98318 -16.76795 -16.63610 -16.58772 -15.87837 -15.75800 -15.62188 -15.22023 -14.98296 -14.71953 -14.63398 -14.46694 -14.23733 -14.11423 -13.78595 -13.59724 -13.46848 -13.40783 -12.98605 -12.88358 -12.79530 -12.55505 -12.43991 -12.30780 -12.09014 -11.93303 -11.80722 -11.53717 -11.21888 -11.01938 -10.58460 -10.45718 -10.20458 -10.18065 -10.09601 -9.67309 -8.61619 -7.84703 -5.41331 0.42249 0.56311 1.43424 1.45911 1.47705 1.50529 1.56338 1.96639 2.45896 2.51638 3.04617 3.25879 3.31139 3.41229 3.72769 3.73879 3.75909 4.02222 4.09116 4.13330 4.16827 4.22634 4.32034 4.34886 4.44372 4.50668 4.53185 4.68092 4.75871 4.82192 4.86570 4.96667 4.98875 5.04605 5.07091 5.09501 5.33693 5.37745 5.40521 5.53166 5.55982 5.66861 5.71943 5.78303 5.92125 6.04263 6.45690 6.51424 7.10744 7.15509 7.19486 7.24210 7.84823 8.34645 9.11821 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.002499 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.770789 B =11200.463369 C =12172.664835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.028 4.028 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.254 4.254 8 H 0.056 0.944 9 N -0.585 5.585 10 C 0.148 3.852 11 C -0.128 4.128 12 C 0.131 3.869 13 N -0.706 5.706 14 C 0.502 3.498 15 O -0.582 6.582 16 C 0.117 3.883 17 H 0.149 0.851 18 C -0.116 4.116 19 C -0.145 4.145 20 C 0.510 3.490 21 O -0.588 6.588 22 N -0.712 5.712 23 C 0.178 3.822 24 C -0.128 4.128 25 C -0.077 4.077 26 C -0.161 4.161 27 C 0.070 3.930 28 N -0.515 5.515 29 C 0.088 3.912 30 H 0.252 0.748 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.418 0.582 38 H 0.075 0.925 39 H 0.142 0.858 40 H 0.111 0.889 41 H 0.139 0.861 42 H 0.411 0.589 43 H 0.074 0.926 44 H 0.044 0.956 45 H 0.143 0.857 46 H 0.168 0.832 47 H 0.178 0.822 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.072 -12.337 8.965 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.226 4.226 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.217 1.217 7 C -0.384 4.384 8 H 0.074 0.926 9 N -0.305 5.305 10 C 0.021 3.979 11 C -0.168 4.168 12 C 0.007 3.993 13 N -0.358 5.358 14 C 0.288 3.712 15 O -0.461 6.461 16 C 0.008 3.992 17 H 0.166 0.834 18 C -0.153 4.153 19 C -0.184 4.184 20 C 0.299 3.701 21 O -0.468 6.468 22 N -0.365 5.365 23 C 0.051 3.949 24 C -0.132 4.132 25 C -0.104 4.104 26 C -0.180 4.180 27 C -0.088 4.088 28 N -0.224 5.224 29 C -0.068 4.068 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.255 0.745 38 H 0.094 0.906 39 H 0.161 0.839 40 H 0.129 0.871 41 H 0.157 0.843 42 H 0.249 0.751 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.161 0.839 46 H 0.185 0.815 47 H 0.195 0.805 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.119 -12.349 8.539 19.295 hybrid contribution -0.670 0.494 -0.635 1.047 sum 11.449 -11.855 7.904 18.278 Atomic orbital electron populations 1.70078 1.06530 1.25961 1.52883 1.25547 0.95380 1.00769 1.00864 0.85675 0.79272 0.81530 0.76820 1.19442 1.22088 1.21734 1.19143 0.94812 0.87055 1.37384 0.92589 1.43858 1.50868 1.02652 1.33085 1.20857 0.95021 0.86566 0.95420 1.22172 0.99756 0.94008 1.00842 1.21177 0.86542 0.94410 0.97192 1.45889 1.27701 1.20491 1.41692 1.21229 0.86380 0.81291 0.82334 1.90743 1.61110 1.60934 1.33337 1.21892 0.93496 0.80897 1.02895 0.83398 1.22742 0.90799 0.98493 1.03315 1.22424 0.98112 0.90279 1.07622 1.21647 0.83989 0.90553 0.73924 1.90736 1.78140 1.26932 1.51034 1.46133 1.11953 1.10056 1.68369 1.19840 0.90301 1.02328 0.82392 1.21891 0.99385 0.94251 0.97721 1.21653 0.96728 0.96634 0.95387 1.22385 0.98671 1.01029 0.95913 1.23188 0.97906 0.87485 1.00228 1.67595 1.14441 1.29267 1.11129 1.22301 0.94865 0.98622 0.91030 0.93861 0.94738 0.92971 0.90967 0.92751 0.92913 0.91813 0.74487 0.90612 0.83945 0.87086 0.84344 0.75092 0.90795 0.93757 0.83927 0.81479 0.80465 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.44 11.35 21.65 0.25 -49.20 16 2 C -0.03 -1.43 4.94 84.86 0.42 -1.01 16 3 Si 0.94 42.32 29.61 68.60 2.03 44.35 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 6 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.25 -12.48 9.47 84.03 0.80 -11.69 16 8 H 0.06 2.78 7.93 -2.91 -0.02 2.76 16 9 N -0.59 -25.13 2.44 -706.34 -1.72 -26.86 16 10 C 0.15 5.10 5.72 86.38 0.49 5.59 16 11 C -0.13 -3.35 5.62 30.59 0.17 -3.18 16 12 C 0.13 2.95 5.67 86.38 0.49 3.44 16 13 N -0.71 -11.34 5.56 -463.06 -2.57 -13.92 16 14 C 0.50 9.27 7.03 87.66 0.62 9.88 16 15 O -0.58 -16.86 16.54 -3.01 -0.05 -16.91 16 16 C 0.12 1.23 3.93 44.70 0.18 1.41 16 17 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 18 C -0.12 -0.78 6.68 31.66 0.21 -0.57 16 19 C -0.14 -1.32 6.86 30.59 0.21 -1.11 16 20 C 0.51 10.05 8.43 87.90 0.74 10.79 16 21 O -0.59 -17.53 18.03 -3.02 -0.05 -17.58 16 22 N -0.71 -11.91 5.46 -442.95 -2.42 -14.33 16 23 C 0.18 7.37 5.49 85.63 0.47 7.84 16 24 C -0.13 -4.54 5.46 -19.77 -0.11 -4.64 16 25 C -0.08 -2.05 8.07 22.47 0.18 -1.87 16 26 C -0.16 -3.43 10.11 22.36 0.23 -3.20 16 27 C 0.07 1.76 11.18 84.69 0.95 2.70 16 28 N -0.52 -17.79 10.36 -195.84 -2.03 -19.82 16 29 C 0.09 3.41 10.86 84.67 0.92 4.33 16 30 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 31 H 0.03 1.29 8.09 -2.39 -0.02 1.27 16 32 H 0.05 1.66 7.83 -2.39 -0.02 1.64 16 33 H 0.07 1.80 6.20 -2.39 -0.01 1.78 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.42 4.17 8.47 -92.71 -0.79 3.39 16 38 H 0.08 0.78 7.90 -2.39 -0.02 0.76 16 39 H 0.14 -0.08 8.14 -2.38 -0.02 -0.10 16 40 H 0.11 0.98 8.14 -2.38 -0.02 0.97 16 41 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.41 7.50 8.94 -92.71 -0.83 6.67 16 43 H 0.07 3.67 5.31 -2.39 -0.01 3.65 16 44 H 0.04 1.71 7.81 -2.39 -0.02 1.69 16 45 H 0.14 3.18 8.04 -2.91 -0.02 3.16 16 46 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 47 H 0.18 3.11 8.06 -2.91 -0.02 3.08 16 48 H 0.12 5.18 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -75.78 402.19 -0.23 -76.01 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.62 Total: 19.55 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 6.96 Total: 18.71 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -8.50 Total: -124.12 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.10 Total: -34.49 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -75.78 -0.23 -76.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230905500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.734 kcal (2) G-P(sol) polarization free energy of solvation -75.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds