Wall clock time and date at job start Sat Apr 11 2020 07:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86801 * 120.00087 * 2 1 4 4 H 1.48503 * 109.47010 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47262 * 300.00033 * 3 2 1 6 6 H 1.48500 * 109.47099 * 60.00278 * 3 2 1 7 7 C 1.38957 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99954 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99794 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99488 * 180.27571 * 9 7 2 11 11 O 1.21288 * 119.99746 * 359.72591 * 10 9 7 12 12 C 1.50700 * 119.99371 * 179.72375 * 10 9 7 13 13 N 1.46908 * 109.46624 * 173.75678 * 12 10 9 14 14 C 1.47192 * 110.99931 * 293.61984 * 13 12 10 15 15 C 1.52876 * 108.12856 * 170.86707 * 14 13 12 16 16 C 1.51062 * 111.32399 * 58.38951 * 15 14 13 17 17 H 1.09008 * 109.64576 * 187.72259 * 16 15 14 18 18 C 1.53988 * 112.52111 * 65.92401 * 16 15 14 19 19 N 1.47759 * 104.18733 * 200.03210 * 18 16 15 20 20 C 1.34772 * 125.64788 * 203.42270 * 19 18 16 21 21 O 1.21703 * 120.00224 * 359.97438 * 20 19 18 22 22 C 1.46678 * 120.00196 * 179.97438 * 20 19 18 23 23 C 1.37870 * 126.23303 * 179.68831 * 22 20 19 24 24 C 1.39841 * 107.08646 * 179.84742 * 23 22 20 25 25 C 1.35458 * 107.86269 * 0.41754 * 24 23 22 26 26 N 1.35537 * 108.87063 * 359.74607 * 25 24 23 27 27 H 0.96993 * 125.67985 * 179.97438 * 26 25 24 28 28 C 1.47146 * 108.70480 * 23.42750 * 19 18 16 29 29 C 1.54170 * 113.16777 * 310.45726 * 16 15 14 30 30 H 1.08999 * 112.19351 * 279.21039 * 29 16 15 31 31 C 1.46444 * 110.99847 * 170.88651 * 13 12 10 32 32 H 0.97008 * 120.00047 * 359.97438 * 1 2 3 33 33 H 0.96999 * 120.00128 * 359.97438 * 9 7 2 34 34 H 1.08996 * 109.47567 * 293.75163 * 12 10 9 35 35 H 1.09003 * 109.47212 * 53.76321 * 12 10 9 36 36 H 1.09002 * 109.73265 * 290.52416 * 14 13 12 37 37 H 1.09001 * 109.72992 * 51.20404 * 14 13 12 38 38 H 1.08998 * 109.11188 * 178.87072 * 15 14 13 39 39 H 1.09012 * 109.10729 * 297.97524 * 15 14 13 40 40 H 1.09001 * 110.48276 * 318.70548 * 18 16 15 41 41 H 1.09000 * 110.49039 * 81.35041 * 18 16 15 42 42 H 1.07996 * 126.46014 * 359.96777 * 23 22 20 43 43 H 1.07997 * 126.07272 * 180.18210 * 24 23 22 44 44 H 1.08001 * 125.56756 * 179.77290 * 25 24 23 45 45 H 1.09004 * 109.91526 * 241.32792 * 28 19 18 46 46 H 1.08993 * 110.09564 * 120.10776 * 28 19 18 47 47 H 1.09006 * 109.15203 * 307.60981 * 31 13 12 48 48 H 1.08997 * 109.15621 * 66.77748 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9972 -3.5579 0.0046 11 8 3.2100 -3.5578 0.0041 12 6 1.2436 -4.8629 0.0108 13 7 2.1910 -5.9761 -0.1350 14 6 2.8297 -5.9549 -1.4610 15 6 3.9571 -6.9874 -1.4626 16 6 3.4363 -8.3699 -1.1472 17 1 4.2733 -9.0566 -1.0203 18 6 2.4976 -8.9104 -2.2417 19 7 1.7303 -9.9773 -1.5662 20 6 1.1250 -11.0157 -2.1758 21 8 1.1853 -11.1303 -3.3859 22 6 0.3934 -12.0078 -1.3808 23 6 -0.2746 -13.1108 -1.8685 24 6 -0.8226 -13.7787 -0.7689 25 6 -0.4951 -13.0822 0.3458 26 7 0.2437 -12.0038 -0.0124 27 1 0.6063 -11.3397 0.5943 28 6 1.7364 -9.7181 -0.1178 29 6 2.5397 -8.4089 0.1063 30 1 3.1212 -8.4324 1.0279 31 6 1.5262 -7.2629 0.0815 32 1 -0.4850 0.8401 0.0004 33 1 0.3533 -2.3907 0.0002 34 1 0.7038 -4.9663 0.9521 35 1 0.5354 -4.8776 -0.8177 36 1 2.0967 -6.2092 -2.2267 37 1 3.2382 -4.9635 -1.6568 38 1 4.4288 -6.9992 -2.4451 39 1 4.6987 -6.7071 -0.7144 40 1 1.8295 -8.1243 -2.5936 41 1 3.0744 -9.3214 -3.0702 42 1 -0.3573 -13.4049 -2.9044 43 1 -1.4068 -14.6864 -0.8027 44 1 -0.7762 -13.3438 1.3552 45 1 2.2188 -10.5440 0.4052 46 1 0.7160 -9.5945 0.2449 47 1 0.9944 -7.2351 1.0326 48 1 0.8107 -7.4355 -0.7223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264081885.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:36 Heat of formation + Delta-G solvation = -26.710284 kcal Electronic energy + Delta-G solvation = -30457.214483 eV Core-core repulsion = 26319.095026 eV Total energy + Delta-G solvation = -4138.119457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.49160 -41.45156 -40.21397 -39.38933 -37.24907 -35.86506 -34.22012 -33.23186 -32.52821 -32.05885 -30.60845 -29.25745 -28.41408 -26.68418 -25.96493 -23.85147 -23.51628 -22.49178 -21.62926 -21.05204 -20.96229 -19.96757 -19.77933 -18.73175 -17.78626 -17.51677 -17.37694 -16.67151 -16.62422 -16.34303 -16.08516 -15.82441 -15.45976 -15.31922 -15.00477 -14.88046 -14.63432 -14.44308 -14.22096 -14.14884 -13.92874 -13.72356 -13.52169 -13.48297 -13.19700 -13.11728 -12.92777 -12.74279 -12.66203 -12.40099 -12.30398 -12.11795 -11.76453 -11.60650 -11.40326 -11.33974 -11.20284 -10.25872 -10.04414 -9.99100 -9.87494 -9.24046 -9.16754 -8.46454 -5.94616 0.41243 1.36123 1.41408 1.55303 1.71908 1.82242 2.06778 2.24897 2.27795 2.29619 2.69275 3.20600 3.28440 3.35206 3.44562 3.62965 3.75741 3.94998 4.12801 4.16811 4.22072 4.26902 4.32070 4.34955 4.40259 4.41894 4.44632 4.49623 4.52311 4.55900 4.61400 4.71183 4.77762 4.86987 4.97526 5.06799 5.11878 5.15447 5.24969 5.28246 5.35335 5.41641 5.75042 5.88680 5.93120 6.06755 6.19095 6.30809 6.53035 6.61271 6.94050 7.13977 7.57855 8.13500 8.71234 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.002040 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.571646 B =13722.460240 C =14164.674869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.328 4.328 8 H 0.079 0.921 9 N -0.577 5.577 10 C 0.443 3.557 11 O -0.611 6.611 12 C 0.056 3.944 13 N -0.518 5.518 14 C 0.053 3.947 15 C -0.092 4.092 16 C -0.084 4.084 17 H 0.098 0.902 18 C 0.110 3.890 19 N -0.617 5.617 20 C 0.597 3.403 21 O -0.581 6.581 22 C -0.082 4.082 23 C -0.126 4.126 24 C -0.227 4.227 25 C 0.044 3.956 26 N -0.533 5.533 27 H 0.428 0.572 28 C 0.090 3.910 29 C -0.074 4.074 30 H 0.128 0.872 31 C 0.056 3.944 32 H 0.277 0.723 33 H 0.395 0.605 34 H 0.114 0.886 35 H 0.058 0.942 36 H 0.030 0.970 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.134 0.866 43 H 0.162 0.838 44 H 0.215 0.785 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 -26.238 4.586 26.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.215 4.215 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.458 4.458 8 H 0.097 0.903 9 N -0.215 5.215 10 C 0.230 3.770 11 O -0.496 6.496 12 C -0.075 4.075 13 N -0.243 5.243 14 C -0.075 4.075 15 C -0.130 4.130 16 C -0.103 4.103 17 H 0.117 0.883 18 C -0.012 4.012 19 N -0.350 5.350 20 C 0.389 3.611 21 O -0.462 6.462 22 C -0.195 4.195 23 C -0.153 4.153 24 C -0.251 4.251 25 C -0.093 4.093 26 N -0.134 5.134 27 H 0.273 0.727 28 C -0.033 4.033 29 C -0.093 4.093 30 H 0.146 0.854 31 C -0.072 4.072 32 H 0.086 0.914 33 H 0.228 0.772 34 H 0.132 0.868 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.152 0.848 43 H 0.179 0.821 44 H 0.232 0.768 45 H 0.116 0.884 46 H 0.106 0.894 47 H 0.115 0.885 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.682 -25.979 4.363 26.352 hybrid contribution -0.742 1.462 -0.873 1.857 sum -1.424 -24.518 3.490 24.806 Atomic orbital electron populations 1.69679 1.06821 1.29126 1.50705 1.26030 0.96537 1.02407 0.96511 0.84884 0.78084 0.77228 0.78232 1.19728 1.19834 1.19628 1.19677 0.92651 0.83948 1.49509 0.90258 1.41972 1.09272 1.04786 1.65466 1.20737 0.88336 0.85822 0.82096 1.90482 1.15527 1.87773 1.55839 1.21750 0.93452 0.88901 1.03431 1.61838 1.30455 1.01583 1.30395 1.22189 0.96647 1.00096 0.88569 1.20844 0.97381 0.92153 1.02603 1.21522 0.97834 0.97126 0.93861 0.88335 1.22238 0.93703 0.88805 0.96442 1.48496 1.52651 1.24674 1.09139 1.17082 0.77953 0.79788 0.86254 1.90814 1.63477 1.76713 1.15151 1.20069 1.12866 1.02353 0.84177 1.21524 0.99193 0.94448 1.00158 1.21227 1.08474 1.04033 0.91337 1.22820 0.96699 0.88083 1.01685 1.42678 1.41685 1.23289 1.05775 0.72711 1.22722 1.01701 0.98760 0.80088 1.22247 0.95530 0.91483 0.99992 0.85358 1.22280 0.95185 0.87849 1.01894 0.91405 0.77167 0.86778 0.92416 0.95233 0.92530 0.90602 0.90958 0.92373 0.90936 0.84793 0.82058 0.76813 0.88374 0.89358 0.88526 0.95380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.66 13.05 21.66 0.28 -49.37 16 2 C -0.02 -0.82 5.50 84.93 0.47 -0.36 16 3 Si 0.99 42.84 29.55 68.60 2.03 44.86 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.33 -18.46 9.68 84.04 0.81 -17.65 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.58 -29.24 5.29 -306.98 -1.62 -30.86 16 10 C 0.44 20.51 7.28 87.66 0.64 21.14 16 11 O -0.61 -32.69 14.33 -3.05 -0.04 -32.73 16 12 C 0.06 1.84 5.43 85.56 0.46 2.31 16 13 N -0.52 -15.11 4.38 -901.44 -3.95 -19.06 16 14 C 0.05 1.60 4.99 86.21 0.43 2.03 16 15 C -0.09 -2.14 5.55 29.92 0.17 -1.98 16 16 C -0.08 -1.50 2.95 -10.70 -0.03 -1.54 16 17 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 18 C 0.11 2.35 5.84 86.47 0.51 2.86 16 19 N -0.62 -12.22 3.34 -815.33 -2.72 -14.94 16 20 C 0.60 15.18 7.82 86.45 0.68 15.86 16 21 O -0.58 -19.79 17.16 -4.36 -0.07 -19.86 16 22 C -0.08 -1.65 6.89 40.35 0.28 -1.38 16 23 C -0.13 -2.53 10.65 22.57 0.24 -2.29 16 24 C -0.23 -3.00 10.81 22.01 0.24 -2.77 16 25 C 0.04 0.38 11.89 83.48 0.99 1.37 16 26 N -0.53 -6.06 5.62 -183.61 -1.03 -7.09 16 27 H 0.43 2.59 4.92 -92.71 -0.46 2.13 16 28 C 0.09 1.03 4.41 87.02 0.38 1.41 16 29 C -0.07 -1.07 3.72 -9.63 -0.04 -1.11 16 30 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 31 C 0.06 1.09 4.20 86.39 0.36 1.45 16 32 H 0.28 13.93 8.31 -92.70 -0.77 13.16 16 33 H 0.39 19.09 7.90 -92.71 -0.73 18.36 16 34 H 0.11 3.21 7.97 -2.39 -0.02 3.19 16 35 H 0.06 1.78 8.12 -2.39 -0.02 1.77 16 36 H 0.03 0.86 6.67 -2.39 -0.02 0.84 16 37 H 0.06 2.22 6.07 -2.39 -0.01 2.20 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.06 1.41 6.12 -2.39 -0.01 1.39 16 41 H 0.07 1.68 8.06 -2.39 -0.02 1.66 16 42 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 43 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 44 H 0.22 -0.08 8.06 -2.91 -0.02 -0.10 16 45 H 0.10 0.64 7.21 -2.39 -0.02 0.63 16 46 H 0.09 0.75 6.72 -2.39 -0.02 0.74 16 47 H 0.10 1.52 7.97 -2.38 -0.02 1.50 16 48 H 0.03 0.59 7.10 -2.39 -0.02 0.57 16 Total: -1.00 -77.82 378.70 -0.72 -78.54 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: -0.18 Total: 31.14 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 6.59 Total: 19.38 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -9.04 Total: -121.32 kcal Atomic # 8 Polarization: -52.48 SS G_CDS: -0.12 Total: -52.60 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -77.82 -0.72 -78.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264081885.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.831 kcal (2) G-P(sol) polarization free energy of solvation -77.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds