Wall clock time and date at job start Sat Apr 11 2020 07:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99839 * 2 1 4 4 H 1.48497 * 109.47110 * 269.99845 * 3 2 1 5 5 H 1.48505 * 109.47165 * 29.99852 * 3 2 1 6 6 H 1.48503 * 109.47281 * 149.99790 * 3 2 1 7 7 C 1.37878 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00208 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99804 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46794 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.46735 * 179.97438 * 10 9 7 12 12 C 1.46848 * 124.36735 * 269.97104 * 11 10 9 13 13 C 1.54638 * 105.50540 * 196.87691 * 12 11 10 14 14 C 1.53915 * 101.58886 * 335.21867 * 13 12 11 15 15 C 1.53614 * 110.30993 * 264.51373 * 14 13 12 16 16 C 1.55327 * 102.88429 * 260.44691 * 15 14 13 17 17 C 1.54984 * 101.66444 * 325.01055 * 16 15 14 18 18 N 1.46705 * 110.97963 * 145.04169 * 14 13 12 19 19 C 1.34776 * 125.75576 * 302.13303 * 18 14 13 20 20 O 1.21282 * 119.99861 * 359.97438 * 19 18 14 21 21 C 1.50695 * 120.00331 * 179.97438 * 19 18 14 22 22 C 1.50694 * 109.47440 * 179.97438 * 21 19 18 23 23 C 1.39870 * 126.03828 * 90.02195 * 22 21 19 24 24 N 1.30844 * 108.20371 * 179.97438 * 23 22 21 25 25 N 1.40085 * 108.20445 * 0.02562 * 24 23 22 26 26 H 0.96996 * 126.03525 * 179.97438 * 25 24 23 27 27 C 1.34955 * 107.92154 * 359.75738 * 25 24 23 28 28 C 1.34662 * 124.36703 * 89.97751 * 11 10 9 29 29 O 1.21275 * 125.07398 * 359.17037 * 28 11 10 30 30 H 0.96998 * 120.00315 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47298 * 60.00258 * 9 7 2 32 32 H 1.08998 * 109.46821 * 299.99674 * 9 7 2 33 33 H 1.08997 * 109.47142 * 59.99972 * 10 9 7 34 34 H 1.09001 * 109.47042 * 299.99900 * 10 9 7 35 35 H 1.08997 * 110.24306 * 315.88763 * 12 11 10 36 36 H 1.09007 * 110.24011 * 77.78551 * 12 11 10 37 37 H 1.08996 * 111.00848 * 217.14447 * 13 12 11 38 38 H 1.09000 * 111.00582 * 93.29003 * 13 12 11 39 39 H 1.09002 * 110.76228 * 142.04888 * 15 14 13 40 40 H 1.08997 * 110.76203 * 18.85001 * 15 14 13 41 41 H 1.09006 * 110.98432 * 83.09899 * 16 15 14 42 42 H 1.08996 * 110.98755 * 206.87605 * 16 15 14 43 43 H 1.09005 * 110.35922 * 155.44879 * 17 16 15 44 44 H 1.08989 * 110.36027 * 277.64911 * 17 16 15 45 45 H 1.09004 * 109.47261 * 300.00075 * 21 19 18 46 46 H 1.09004 * 109.47511 * 59.99507 * 21 19 18 47 47 H 1.08004 * 125.90218 * 359.96114 * 23 22 21 48 48 H 1.07998 * 126.12433 * 180.24064 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4866 -2.6364 0.0009 12 6 6.3155 -2.6368 -1.2112 13 6 7.7259 -3.0692 -0.7474 14 6 7.7038 -2.6565 0.7352 15 6 8.3367 -1.2680 0.9117 16 6 9.7745 -1.6017 1.3955 17 6 9.5289 -2.8635 2.2612 18 7 8.4646 -3.6051 1.5559 19 6 8.2310 -4.9292 1.6498 20 8 7.3233 -5.4308 1.0210 21 6 9.0976 -5.7863 2.5359 22 6 8.6300 -7.2170 2.4637 23 6 9.0775 -8.1842 1.5578 24 7 8.4424 -9.3011 1.8055 25 7 7.5690 -9.0793 2.8780 26 1 6.9730 -9.7345 3.2735 27 6 7.7068 -7.7944 3.2670 28 6 6.2468 -2.6360 1.1125 29 8 5.8210 -2.6213 2.2479 30 1 -0.4850 0.8400 -0.0004 31 1 3.8746 -0.6800 0.8911 32 1 3.8752 -0.6804 -0.8889 33 1 3.6586 -3.1501 -0.8892 34 1 3.6579 -3.1505 0.8907 35 1 5.9223 -3.3490 -1.9367 36 1 6.3497 -1.6374 -1.6451 37 1 8.4994 -2.5278 -1.2920 38 1 7.8583 -4.1461 -0.8511 39 1 7.7997 -0.6914 1.6649 40 1 8.3629 -0.7318 -0.0369 41 1 10.4274 -1.8277 0.5524 42 1 10.1829 -0.7889 1.9960 43 1 10.4357 -3.4655 2.3199 44 1 9.1977 -2.5795 3.2600 45 1 10.1330 -5.7247 2.2009 46 1 9.0271 -5.4329 3.5647 47 1 9.8190 -8.0350 0.7869 48 1 7.1740 -7.3126 4.0734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269658022.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:18 Heat of formation + Delta-G solvation = 18.034243 kcal Electronic energy + Delta-G solvation = -31305.570141 eV Core-core repulsion = 27169.390952 eV Total energy + Delta-G solvation = -4136.179189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.51134 -41.13792 -38.85765 -37.20536 -35.98421 -33.75299 -32.93947 -31.96133 -31.70447 -31.28353 -29.50391 -28.00526 -27.28509 -25.30441 -24.17881 -22.84588 -22.24163 -21.39305 -21.34243 -20.24094 -19.62225 -18.47244 -17.87948 -17.25359 -16.93701 -16.45675 -15.75489 -15.45373 -15.42497 -14.86673 -14.63818 -14.59072 -14.16360 -14.07851 -13.83440 -13.63331 -13.44584 -13.13951 -12.99606 -12.92975 -12.81973 -12.68806 -12.46133 -12.21966 -12.04456 -11.76148 -11.57147 -11.50484 -11.43755 -10.98936 -10.85644 -10.81457 -10.43528 -9.99013 -9.90313 -9.86149 -9.79642 -9.61562 -9.25112 -8.70615 -8.55266 -8.53509 -8.09141 -6.04909 -4.03597 1.72181 2.36828 2.61198 2.72894 2.77984 3.18445 3.29755 3.37570 3.43153 3.53966 4.17749 4.28715 4.38126 4.45200 4.50583 4.66981 4.70007 4.71504 4.77188 4.91294 4.99519 5.01302 5.16917 5.22633 5.29178 5.35073 5.40486 5.45421 5.50466 5.52474 5.64047 5.70944 5.77108 5.85686 5.88062 5.93984 6.02627 6.26635 6.38397 6.40530 6.63784 6.88052 7.06473 7.19114 7.37424 7.40505 7.45516 7.68447 7.77590 8.16036 8.49753 8.63247 8.98680 9.56884 11.08336 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.003016 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.013566 B = 9282.812944 C =10548.963900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.074 0.926 9 C -0.023 4.023 10 C 0.139 3.861 11 N -0.607 5.607 12 C 0.105 3.895 13 C -0.135 4.135 14 C 0.133 3.867 15 C -0.115 4.115 16 C -0.128 4.128 17 C 0.099 3.901 18 N -0.601 5.601 19 C 0.527 3.473 20 O -0.517 6.517 21 C -0.052 4.052 22 C -0.224 4.224 23 C 0.067 3.933 24 N -0.298 5.298 25 N -0.476 5.476 26 H 0.439 0.561 27 C 0.078 3.922 28 C 0.521 3.479 29 O -0.526 6.526 30 H 0.264 0.736 31 H 0.020 0.980 32 H 0.013 0.987 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.180 0.820 48 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.614 -9.481 3.767 29.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.061 4.061 10 C 0.019 3.981 11 N -0.340 5.340 12 C -0.019 4.019 13 C -0.173 4.173 14 C 0.044 3.956 15 C -0.153 4.153 16 C -0.166 4.166 17 C -0.024 4.024 18 N -0.336 5.336 19 C 0.315 3.685 20 O -0.391 6.391 21 C -0.093 4.093 22 C -0.236 4.236 23 C -0.120 4.120 24 N -0.120 5.120 25 N -0.184 5.184 26 H 0.283 0.717 27 C -0.070 4.070 28 C 0.306 3.694 29 O -0.401 6.401 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.031 0.969 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.197 0.803 48 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 26.457 -10.979 3.694 28.882 hybrid contribution -0.071 1.611 0.370 1.654 sum 26.386 -9.369 4.064 28.293 Atomic orbital electron populations 1.69907 1.06259 1.26938 1.50917 1.24978 0.94718 0.99118 0.94413 0.86764 0.80482 0.83596 0.78403 1.20263 1.21286 1.19053 1.20977 0.88934 0.94730 1.51212 0.90820 1.19893 0.97307 0.92305 0.96630 1.21569 0.74298 0.99959 1.02248 1.48457 1.07512 1.71830 1.06161 1.22041 0.89749 1.01654 0.88478 1.22929 0.97187 1.03665 0.93565 1.21194 0.91535 0.90884 0.92026 1.22538 0.95646 0.93506 1.03624 1.22807 0.96475 0.97327 1.00024 1.22433 0.90359 0.93174 0.96402 1.48339 1.32640 1.06186 1.46453 1.20485 0.85113 0.80246 0.82640 1.90758 1.31238 1.71939 1.45148 1.19837 0.99217 0.89893 1.00340 1.19417 1.05786 0.96057 1.02313 1.23702 0.99389 0.90132 0.98827 1.77304 1.06932 1.23562 1.04245 1.46230 1.34543 1.10165 1.27430 0.71692 1.22370 0.98389 0.85765 1.00498 1.20370 0.88017 0.76030 0.85009 1.90670 1.78169 1.50336 1.20961 0.92670 0.96201 0.96918 0.91023 0.90733 0.90305 0.91106 0.89307 0.88977 0.89699 0.89009 0.90187 0.89357 0.90086 0.90834 0.88214 0.88378 0.80270 0.80784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 7 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 16 8 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.02 -0.58 4.37 -27.88 -0.12 -0.70 16 10 C 0.14 3.07 5.88 -4.04 -0.02 3.05 16 11 N -0.61 -11.49 2.94 -172.50 -0.51 -12.00 16 12 C 0.10 1.47 7.36 -2.99 -0.02 1.45 16 13 C -0.13 -1.58 6.06 -25.39 -0.15 -1.73 16 14 C 0.13 1.77 0.73 -132.15 -0.10 1.68 16 15 C -0.11 -1.17 5.95 -25.18 -0.15 -1.32 16 16 C -0.13 -0.82 7.09 -24.45 -0.17 -0.99 16 17 C 0.10 0.73 6.72 -2.36 -0.02 0.71 16 18 N -0.60 -7.00 2.92 -157.04 -0.46 -7.45 16 19 C 0.53 6.78 7.29 -10.99 -0.08 6.70 16 20 O -0.52 -8.99 14.50 5.56 0.08 -8.91 16 21 C -0.05 -0.44 5.21 -29.04 -0.15 -0.59 16 22 C -0.22 -2.32 4.59 -105.06 -0.48 -2.80 16 23 C 0.07 0.71 11.96 -17.36 -0.21 0.50 16 24 N -0.30 -3.59 12.70 30.63 0.39 -3.20 16 25 N -0.48 -4.68 7.36 30.45 0.22 -4.46 16 26 H 0.44 2.94 8.96 -182.61 -1.64 1.30 16 27 C 0.08 0.77 11.90 -17.22 -0.20 0.56 16 28 C 0.52 9.98 6.11 -11.12 -0.07 9.92 16 29 O -0.53 -12.18 17.62 5.56 0.10 -12.09 16 30 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 31 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 32 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 33 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 34 H 0.07 1.79 7.95 -51.93 -0.41 1.38 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 37 H 0.09 0.74 7.68 -51.93 -0.40 0.34 16 38 H 0.09 1.21 6.56 -51.93 -0.34 0.86 16 39 H 0.08 1.03 7.91 -51.93 -0.41 0.62 16 40 H 0.09 0.79 7.63 -51.93 -0.40 0.39 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.35 7.51 -51.93 -0.39 -0.04 16 44 H 0.07 0.57 8.14 -51.94 -0.42 0.14 16 45 H 0.10 0.56 7.86 -51.93 -0.41 0.15 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.18 1.42 8.06 -52.48 -0.42 1.00 16 48 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 392.78 15.07 5.92 5.92 Total: -1.00 -40.84 392.78 -9.08 -49.93 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.55 Total: -0.59 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -2.38 Total: 2.78 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.42 Total: -54.63 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.18 Total: -20.99 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -40.84 -9.08 -49.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269658022.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.962 kcal (2) G-P(sol) polarization free energy of solvation -40.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds