Wall clock time and date at job start Sat Apr 11 2020 07:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99839 * 2 1 4 4 H 1.48497 * 109.47110 * 269.99845 * 3 2 1 5 5 H 1.48505 * 109.47165 * 29.99852 * 3 2 1 6 6 H 1.48503 * 109.47281 * 149.99790 * 3 2 1 7 7 C 1.37878 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00208 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99804 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46794 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.46735 * 179.97438 * 10 9 7 12 12 C 1.46848 * 124.36735 * 269.97104 * 11 10 9 13 13 C 1.54638 * 105.50540 * 196.87691 * 12 11 10 14 14 C 1.53915 * 101.58886 * 335.21867 * 13 12 11 15 15 C 1.53614 * 110.30993 * 264.51373 * 14 13 12 16 16 C 1.55327 * 102.88429 * 260.44691 * 15 14 13 17 17 C 1.54984 * 101.66444 * 325.01055 * 16 15 14 18 18 N 1.46705 * 110.97963 * 145.04169 * 14 13 12 19 19 C 1.34776 * 125.75576 * 302.13303 * 18 14 13 20 20 O 1.21282 * 119.99861 * 359.97438 * 19 18 14 21 21 C 1.50695 * 120.00331 * 179.97438 * 19 18 14 22 22 C 1.50694 * 109.47440 * 179.97438 * 21 19 18 23 23 C 1.39870 * 126.03828 * 90.02195 * 22 21 19 24 24 N 1.30844 * 108.20371 * 179.97438 * 23 22 21 25 25 N 1.40085 * 108.20445 * 0.02562 * 24 23 22 26 26 H 0.96996 * 126.03525 * 179.97438 * 25 24 23 27 27 C 1.34955 * 107.92154 * 359.75738 * 25 24 23 28 28 C 1.34662 * 124.36703 * 89.97751 * 11 10 9 29 29 O 1.21275 * 125.07398 * 359.17037 * 28 11 10 30 30 H 0.96998 * 120.00315 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47298 * 60.00258 * 9 7 2 32 32 H 1.08998 * 109.46821 * 299.99674 * 9 7 2 33 33 H 1.08997 * 109.47142 * 59.99972 * 10 9 7 34 34 H 1.09001 * 109.47042 * 299.99900 * 10 9 7 35 35 H 1.08997 * 110.24306 * 315.88763 * 12 11 10 36 36 H 1.09007 * 110.24011 * 77.78551 * 12 11 10 37 37 H 1.08996 * 111.00848 * 217.14447 * 13 12 11 38 38 H 1.09000 * 111.00582 * 93.29003 * 13 12 11 39 39 H 1.09002 * 110.76228 * 142.04888 * 15 14 13 40 40 H 1.08997 * 110.76203 * 18.85001 * 15 14 13 41 41 H 1.09006 * 110.98432 * 83.09899 * 16 15 14 42 42 H 1.08996 * 110.98755 * 206.87605 * 16 15 14 43 43 H 1.09005 * 110.35922 * 155.44879 * 17 16 15 44 44 H 1.08989 * 110.36027 * 277.64911 * 17 16 15 45 45 H 1.09004 * 109.47261 * 300.00075 * 21 19 18 46 46 H 1.09004 * 109.47511 * 59.99507 * 21 19 18 47 47 H 1.08004 * 125.90218 * 359.96114 * 23 22 21 48 48 H 1.07998 * 126.12433 * 180.24064 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4866 -2.6364 0.0009 12 6 6.3155 -2.6368 -1.2112 13 6 7.7259 -3.0692 -0.7474 14 6 7.7038 -2.6565 0.7352 15 6 8.3367 -1.2680 0.9117 16 6 9.7745 -1.6017 1.3955 17 6 9.5289 -2.8635 2.2612 18 7 8.4646 -3.6051 1.5559 19 6 8.2310 -4.9292 1.6498 20 8 7.3233 -5.4308 1.0210 21 6 9.0976 -5.7863 2.5359 22 6 8.6300 -7.2170 2.4637 23 6 9.0775 -8.1842 1.5578 24 7 8.4424 -9.3011 1.8055 25 7 7.5690 -9.0793 2.8780 26 1 6.9730 -9.7345 3.2735 27 6 7.7068 -7.7944 3.2670 28 6 6.2468 -2.6360 1.1125 29 8 5.8210 -2.6213 2.2479 30 1 -0.4850 0.8400 -0.0004 31 1 3.8746 -0.6800 0.8911 32 1 3.8752 -0.6804 -0.8889 33 1 3.6586 -3.1501 -0.8892 34 1 3.6579 -3.1505 0.8907 35 1 5.9223 -3.3490 -1.9367 36 1 6.3497 -1.6374 -1.6451 37 1 8.4994 -2.5278 -1.2920 38 1 7.8583 -4.1461 -0.8511 39 1 7.7997 -0.6914 1.6649 40 1 8.3629 -0.7318 -0.0369 41 1 10.4274 -1.8277 0.5524 42 1 10.1829 -0.7889 1.9960 43 1 10.4357 -3.4655 2.3199 44 1 9.1977 -2.5795 3.2600 45 1 10.1330 -5.7247 2.2009 46 1 9.0271 -5.4329 3.5647 47 1 9.8190 -8.0350 0.7869 48 1 7.1740 -7.3126 4.0734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269658022.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:17 Heat of formation + Delta-G solvation = -12.559420 kcal Electronic energy + Delta-G solvation = -31306.896782 eV Core-core repulsion = 27169.390952 eV Total energy + Delta-G solvation = -4137.505830 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.44774 -42.03785 -40.00173 -38.20843 -37.48234 -35.61339 -34.06216 -33.44283 -32.54615 -32.04812 -31.07525 -29.04382 -28.03790 -27.10006 -25.20281 -23.71743 -23.23781 -22.96439 -22.08032 -21.38574 -20.71987 -19.60846 -19.11422 -18.63680 -18.19018 -17.46511 -17.04407 -16.68467 -16.55686 -16.23419 -15.79414 -15.54903 -15.37011 -15.27592 -14.87278 -14.77709 -14.71125 -14.50398 -14.23311 -13.97059 -13.91907 -13.66683 -13.62962 -13.42942 -13.13320 -12.96122 -12.78019 -12.65930 -12.44487 -12.23537 -12.03362 -11.98034 -11.85778 -11.62176 -11.59595 -11.52210 -10.92420 -10.84124 -10.83639 -10.60335 -9.65915 -9.55789 -9.46491 -8.36711 -6.43048 0.95731 1.28835 1.33351 1.37165 1.45486 1.71460 1.73753 2.04411 2.06180 2.30545 2.32099 2.97578 3.25958 3.43651 3.58654 3.79177 3.81763 3.91718 4.03373 4.06267 4.14446 4.20923 4.24818 4.30926 4.43112 4.54716 4.58774 4.63085 4.68517 4.69882 4.75353 4.79269 4.87317 4.90887 4.96145 5.02020 5.07636 5.16272 5.18812 5.22812 5.34283 5.42837 5.44251 5.67163 5.69247 6.15837 6.22317 6.40357 6.58369 6.62626 6.70244 7.14704 7.22244 7.27045 8.79993 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.003016 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.013566 B = 9282.812944 C =10548.963900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.955 3.045 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.539 4.539 8 H 0.033 0.967 9 C -0.007 4.007 10 C 0.150 3.850 11 N -0.617 5.617 12 C 0.094 3.906 13 C -0.118 4.118 14 C 0.134 3.866 15 C -0.118 4.118 16 C -0.113 4.113 17 C 0.089 3.911 18 N -0.601 5.601 19 C 0.518 3.482 20 O -0.574 6.574 21 C -0.041 4.041 22 C -0.238 4.238 23 C 0.060 3.940 24 N -0.334 5.334 25 N -0.476 5.476 26 H 0.448 0.552 27 C 0.068 3.932 28 C 0.502 3.498 29 O -0.584 6.584 30 H 0.269 0.731 31 H 0.002 0.998 32 H 0.033 0.967 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.137 0.863 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.122 0.878 44 H 0.066 0.934 45 H 0.139 0.861 46 H 0.116 0.884 47 H 0.202 0.798 48 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.387 -7.517 2.853 33.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.189 4.189 3 Si 0.777 3.223 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.577 4.577 8 H 0.051 0.949 9 C -0.045 4.045 10 C 0.028 3.972 11 N -0.349 5.349 12 C -0.028 4.028 13 C -0.156 4.156 14 C 0.044 3.956 15 C -0.156 4.156 16 C -0.150 4.150 17 C -0.032 4.032 18 N -0.336 5.336 19 C 0.308 3.692 20 O -0.453 6.453 21 C -0.082 4.082 22 C -0.250 4.250 23 C -0.126 4.126 24 N -0.157 5.157 25 N -0.185 5.185 26 H 0.294 0.706 27 C -0.081 4.081 28 C 0.290 3.710 29 O -0.463 6.463 30 H 0.078 0.922 31 H 0.020 0.980 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.155 0.845 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.140 0.860 44 H 0.084 0.916 45 H 0.157 0.843 46 H 0.134 0.866 47 H 0.219 0.781 48 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 31.289 -9.020 2.762 32.680 hybrid contribution -1.698 0.916 0.701 2.052 sum 29.591 -8.104 3.463 30.875 Atomic orbital electron populations 1.70053 1.08233 1.28457 1.51859 1.25999 0.95693 1.03573 0.93616 0.85595 0.78963 0.77937 0.79763 1.17671 1.20556 1.18335 1.21263 0.91301 0.93564 1.51586 0.94869 1.19682 0.94389 0.94113 0.96344 1.21109 0.77289 0.97856 1.00983 1.48585 1.06281 1.71550 1.08499 1.22430 0.90434 1.03295 0.86683 1.22938 0.96699 1.03368 0.92600 1.21260 0.87639 0.93492 0.93162 1.22632 0.97604 0.91132 1.04220 1.22867 0.94071 0.97179 1.00899 1.22801 0.90447 0.94091 0.95832 1.48555 1.32913 1.05857 1.46231 1.21317 0.84762 0.80834 0.82240 1.90734 1.33769 1.73188 1.47586 1.19916 1.00117 0.87741 1.00396 1.19746 1.05959 0.97025 1.02230 1.24161 0.99483 0.89827 0.99155 1.77234 1.08144 1.24827 1.05503 1.46294 1.34487 1.10620 1.27105 0.70597 1.22817 0.98379 0.85849 1.01018 1.21643 0.90957 0.74329 0.84089 1.90612 1.79854 1.52704 1.23175 0.92168 0.98002 0.94901 0.90080 0.94320 0.89861 0.88801 0.84506 0.90441 0.92484 0.86756 0.87442 0.87257 0.85952 0.91590 0.84322 0.86562 0.78092 0.79137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.01 13.96 21.45 0.30 -60.71 16 2 C 0.01 0.53 5.47 84.66 0.46 0.99 16 3 Si 0.95 45.81 27.47 68.60 1.88 47.70 16 4 H -0.25 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.26 -12.07 6.54 99.48 0.65 -11.42 16 7 C -0.54 -33.01 9.66 25.60 0.25 -32.77 16 8 H 0.03 2.22 7.99 -2.91 -0.02 2.20 16 9 C -0.01 -0.36 4.37 29.85 0.13 -0.22 16 10 C 0.15 6.94 5.88 86.38 0.51 7.44 16 11 N -0.62 -23.71 2.94 -818.13 -2.41 -26.11 16 12 C 0.09 2.46 7.36 86.87 0.64 3.10 16 13 C -0.12 -2.40 6.06 31.46 0.19 -2.21 16 14 C 0.13 3.32 0.73 3.28 0.00 3.32 16 15 C -0.12 -2.01 5.95 31.60 0.19 -1.82 16 16 C -0.11 -0.85 7.09 32.07 0.23 -0.62 16 17 C 0.09 0.94 6.72 86.84 0.58 1.53 16 18 N -0.60 -12.56 2.92 -769.16 -2.25 -14.81 16 19 C 0.52 12.59 7.29 87.66 0.64 13.23 16 20 O -0.57 -20.20 14.50 -3.03 -0.04 -20.24 16 21 C -0.04 -0.60 5.21 29.10 0.15 -0.45 16 22 C -0.24 -4.64 4.59 -20.15 -0.09 -4.73 16 23 C 0.06 1.23 11.96 85.24 1.02 2.25 16 24 N -0.33 -8.04 12.70 -57.02 -0.72 -8.77 16 25 N -0.48 -9.48 7.36 -57.59 -0.42 -9.90 16 26 H 0.45 6.26 8.96 -213.34 -1.91 4.35 16 27 C 0.07 1.32 11.90 83.54 0.99 2.31 16 28 C 0.50 19.60 6.11 87.62 0.54 20.14 16 29 O -0.58 -28.51 17.62 -3.01 -0.05 -28.56 16 30 H 0.27 16.05 8.31 -92.71 -0.77 15.27 16 31 H 0.00 0.09 7.20 -2.39 -0.02 0.07 16 32 H 0.03 1.55 7.57 -2.39 -0.02 1.53 16 33 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 34 H 0.04 2.02 7.95 -2.39 -0.02 2.00 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.14 1.49 7.68 -2.39 -0.02 1.47 16 38 H 0.08 1.87 6.56 -2.39 -0.02 1.85 16 39 H 0.06 1.31 7.91 -2.39 -0.02 1.29 16 40 H 0.11 1.42 7.63 -2.39 -0.02 1.40 16 41 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 42 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.12 0.32 7.51 -2.38 -0.02 0.31 16 44 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.14 0.89 7.86 -2.38 -0.02 0.87 16 46 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.20 2.85 8.06 -2.91 -0.02 2.82 16 48 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -97.24 392.78 1.73 -95.51 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -0.99 Total: 14.41 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 6.43 Total: 11.49 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -5.50 Total: -120.30 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.10 Total: -48.81 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.88 Total: 47.70 kcal Total: -97.24 1.73 -95.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269658022.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.951 kcal (2) G-P(sol) polarization free energy of solvation -97.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds