Wall clock time and date at job start Sat Apr 11 2020 07:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99934 * 2 1 4 4 H 1.48495 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47152 * 300.00237 * 3 2 1 6 6 H 1.48498 * 109.46882 * 59.99937 * 3 2 1 7 7 C 1.37874 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00108 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00065 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47389 * 180.02562 * 9 7 2 11 11 N 1.46492 * 109.47185 * 184.96514 * 10 9 7 12 12 C 1.34440 * 118.01929 * 85.75412 * 11 10 9 13 13 O 1.21285 * 118.39537 * 359.55565 * 12 11 10 14 14 C 1.50308 * 123.02741 * 180.58567 * 12 11 10 15 15 C 1.52984 * 109.18304 * 20.44108 * 14 12 11 16 16 C 1.52322 * 109.47925 * 308.13094 * 15 14 12 17 17 H 1.09003 * 109.99418 * 185.21407 * 16 15 14 18 18 C 1.45424 * 117.26437 * 264.58003 * 11 10 9 19 19 H 1.08996 * 111.33111 * 63.71781 * 18 11 10 20 20 C 1.55417 * 108.16792 * 300.82939 * 18 11 10 21 21 C 1.54341 * 103.00695 * 276.41612 * 20 18 11 22 22 N 1.46917 * 110.84121 * 306.86356 * 16 15 14 23 23 C 1.34769 * 125.73522 * 323.08951 * 22 16 15 24 24 O 1.21287 * 120.00022 * 359.72116 * 23 22 16 25 25 C 1.50707 * 120.00128 * 179.71596 * 23 22 16 26 26 C 1.50701 * 109.47105 * 180.02562 * 25 23 22 27 27 C 1.39863 * 126.04205 * 269.69151 * 26 25 23 28 28 N 1.30837 * 108.20485 * 179.82126 * 27 26 25 29 29 N 1.40082 * 108.20404 * 0.43505 * 28 27 26 30 30 H 0.97000 * 126.03969 * 179.69709 * 29 28 27 31 31 C 1.34949 * 107.92676 * 359.72320 * 29 28 27 32 32 H 0.97004 * 119.99848 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.47330 * 60.00336 * 9 7 2 34 34 H 1.09001 * 109.47012 * 300.00400 * 9 7 2 35 35 H 1.08999 * 109.46961 * 64.95850 * 10 9 7 36 36 H 1.08997 * 109.46736 * 304.96817 * 10 9 7 37 37 H 1.08995 * 109.51688 * 260.53133 * 14 12 11 38 38 H 1.08997 * 109.52293 * 140.35078 * 14 12 11 39 39 H 1.08999 * 109.47208 * 188.12745 * 15 14 12 40 40 H 1.09007 * 109.46952 * 68.12823 * 15 14 12 41 41 H 1.08994 * 110.70776 * 158.03926 * 20 18 11 42 42 H 1.09003 * 110.70836 * 34.79473 * 20 18 11 43 43 H 1.08994 * 109.88748 * 218.44639 * 21 20 18 44 44 H 1.09005 * 110.02177 * 97.32812 * 21 20 18 45 45 H 1.08998 * 109.46812 * 300.00544 * 25 23 22 46 46 H 1.09000 * 109.46751 * 60.00321 * 25 23 22 47 47 H 1.08003 * 125.89641 * 0.02562 * 27 26 25 48 48 H 1.07993 * 126.12932 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5168 -4.9274 -0.1201 12 6 1.2046 -5.3623 -1.3533 13 8 1.5326 -4.6846 -2.3041 14 6 0.4490 -6.6369 -1.6055 15 6 -0.3066 -7.0331 -0.3357 16 6 0.6559 -7.0466 0.8448 17 1 0.1481 -7.4165 1.7356 18 6 1.2065 -5.6363 1.1112 19 1 0.5343 -5.0566 1.7438 20 6 2.5431 -5.9528 1.8382 21 6 3.0146 -7.2508 1.1490 22 7 1.8271 -7.8847 0.5547 23 6 1.8166 -9.0375 -0.1434 24 8 0.7736 -9.4670 -0.5891 25 6 3.1009 -9.7928 -0.3703 26 6 2.8172 -11.0364 -1.1728 27 6 2.4971 -12.2953 -0.6541 28 7 2.3174 -13.1167 -1.6565 29 7 2.5276 -12.4078 -2.8463 30 1 2.4651 -12.7690 -3.7444 31 6 2.8329 -11.1339 -2.5224 32 1 -0.4850 0.8401 -0.0004 33 1 0.6241 -2.5567 -0.8903 34 1 0.6247 -2.5570 0.8897 35 1 2.8120 -3.6556 0.9305 36 1 2.9291 -3.5555 -0.8427 37 1 1.1489 -7.4280 -1.8746 38 1 -0.2605 -6.4849 -2.4189 39 1 -0.7378 -8.0259 -0.4643 40 1 -1.1028 -6.3128 -0.1470 41 1 2.3730 -6.1209 2.9016 42 1 3.2649 -5.1506 1.6843 43 1 3.4629 -7.9191 1.8841 44 1 3.7396 -7.0172 0.3693 45 1 3.8024 -9.1612 -0.9153 46 1 3.5334 -10.0709 0.5908 47 1 2.4098 -12.5452 0.3930 48 1 3.0503 -10.3351 -3.2160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269658465.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:22 Heat of formation + Delta-G solvation = -11.603694 kcal Electronic energy + Delta-G solvation = -31405.656890 eV Core-core repulsion = 27268.192504 eV Total energy + Delta-G solvation = -4137.464386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.39221 -41.97962 -40.21017 -38.54723 -36.43620 -35.14426 -34.72587 -33.46033 -32.26891 -31.99084 -30.83483 -29.52720 -27.91375 -26.93414 -25.19345 -24.19263 -23.02401 -22.81386 -22.57183 -21.23444 -20.11151 -19.01988 -18.77068 -18.54959 -18.00777 -17.71934 -17.35677 -16.89115 -16.54126 -16.09750 -15.97189 -15.36792 -15.30097 -15.18934 -14.82243 -14.74693 -14.53042 -14.32536 -14.22765 -13.92433 -13.87695 -13.67273 -13.48079 -13.41947 -12.90300 -12.84583 -12.71421 -12.56222 -12.43084 -12.23595 -12.03232 -11.92093 -11.78354 -11.62370 -11.56289 -11.35174 -10.79894 -10.56601 -10.55640 -10.41669 -9.54628 -9.53507 -9.40162 -8.20262 -6.31726 1.02176 1.39797 1.41785 1.54299 1.64061 1.71221 1.80612 2.09328 2.10728 2.25199 2.42965 3.13696 3.27741 3.55246 3.60009 3.81844 3.86167 4.02131 4.05254 4.09074 4.16523 4.28494 4.33189 4.39367 4.43658 4.58726 4.60980 4.73103 4.75358 4.77690 4.81364 4.84280 4.88747 4.92025 5.00161 5.09240 5.11294 5.19839 5.24738 5.36061 5.45082 5.51941 5.65983 5.72990 5.87107 6.20888 6.46597 6.59460 6.66052 6.75483 6.84841 7.24523 7.33644 7.37614 8.92084 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.023951 B = 0.002443 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.755140 B =11460.335421 C =11650.657152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.026 3.974 10 C 0.130 3.870 11 N -0.588 5.588 12 C 0.507 3.493 13 O -0.603 6.603 14 C -0.110 4.110 15 C -0.125 4.125 16 C 0.138 3.862 17 H 0.115 0.885 18 C 0.120 3.880 19 H 0.104 0.896 20 C -0.142 4.142 21 C 0.102 3.898 22 N -0.614 5.614 23 C 0.526 3.474 24 O -0.564 6.564 25 C -0.049 4.049 26 C -0.235 4.235 27 C 0.057 3.943 28 N -0.336 5.336 29 N -0.475 5.475 30 H 0.449 0.551 31 C 0.072 3.928 32 H 0.262 0.738 33 H -0.030 1.030 34 H -0.001 1.001 35 H 0.100 0.900 36 H 0.048 0.952 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.066 0.934 45 H 0.112 0.888 46 H 0.128 0.872 47 H 0.198 0.802 48 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.760 -24.285 5.217 26.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.084 0.916 9 C -0.012 4.012 10 C 0.007 3.993 11 N -0.319 5.319 12 C 0.297 3.703 13 O -0.485 6.485 14 C -0.150 4.150 15 C -0.163 4.163 16 C 0.035 3.965 17 H 0.133 0.867 18 C 0.016 3.984 19 H 0.122 0.878 20 C -0.180 4.180 21 C -0.020 4.020 22 N -0.349 5.349 23 C 0.317 3.683 24 O -0.443 6.443 25 C -0.089 4.089 26 C -0.247 4.247 27 C -0.129 4.129 28 N -0.159 5.159 29 N -0.184 5.184 30 H 0.294 0.706 31 C -0.077 4.077 32 H 0.071 0.929 33 H -0.012 1.012 34 H 0.018 0.982 35 H 0.118 0.882 36 H 0.067 0.933 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.138 0.862 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.085 0.915 45 H 0.130 0.870 46 H 0.146 0.854 47 H 0.214 0.786 48 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 7.946 -25.386 4.135 26.920 hybrid contribution -0.147 2.013 -0.755 2.155 sum 7.799 -23.373 3.380 24.871 Atomic orbital electron populations 1.70129 1.07969 1.27636 1.51742 1.26007 0.95748 1.03535 0.94699 0.85363 0.79273 0.78556 0.77625 1.18092 1.21175 1.19891 1.21588 0.93674 0.91884 1.50380 0.91616 1.19154 0.94602 0.93241 0.94183 1.21473 0.94357 0.81796 1.01636 1.47559 1.56488 1.22267 1.05584 1.21027 0.79259 0.87733 0.82326 1.90695 1.56530 1.58448 1.42822 1.21408 0.99663 0.93451 1.00461 1.21660 0.97996 1.03932 0.92747 1.21579 0.87602 0.88418 0.98937 0.86703 1.22261 0.98994 0.91888 0.85235 0.87813 1.23278 0.95777 0.97495 1.01438 1.22243 0.87204 0.94436 0.98083 1.48580 1.09515 1.22249 1.54549 1.20902 0.91912 0.79242 0.76253 1.90673 1.34737 1.67978 1.50898 1.19917 0.93898 0.92500 1.02587 1.19699 1.16075 0.95936 0.93024 1.24122 0.97654 0.91470 0.99645 1.77245 1.25495 1.21905 0.91211 1.46295 1.55619 1.07718 1.08772 0.70554 1.22822 0.98841 0.88615 0.97426 0.92894 1.01197 0.98219 0.88163 0.93309 0.88538 0.89495 0.88367 0.90998 0.86246 0.89233 0.87174 0.91514 0.86961 0.85400 0.78572 0.78719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.54 -30.60 9.11 25.60 0.23 -30.37 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.03 1.40 5.25 29.85 0.16 1.56 16 10 C 0.13 5.23 4.77 86.38 0.41 5.65 16 11 N -0.59 -19.69 2.55 -795.38 -2.03 -21.72 16 12 C 0.51 19.27 7.46 87.59 0.65 19.93 16 13 O -0.60 -29.65 16.30 -3.04 -0.05 -29.70 16 14 C -0.11 -3.30 5.60 29.72 0.17 -3.13 16 15 C -0.13 -3.10 4.95 30.36 0.15 -2.95 16 16 C 0.14 2.71 3.26 44.93 0.15 2.86 16 17 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 18 C 0.12 2.73 3.62 46.27 0.17 2.90 16 19 H 0.10 2.41 8.14 -2.39 -0.02 2.40 16 20 C -0.14 -2.05 6.35 31.88 0.20 -1.85 16 21 C 0.10 1.20 6.47 86.71 0.56 1.76 16 22 N -0.61 -10.22 2.82 -792.51 -2.23 -12.46 16 23 C 0.53 9.71 6.33 87.66 0.56 10.27 16 24 O -0.56 -14.67 13.31 -3.05 -0.04 -14.71 16 25 C -0.05 -0.57 5.38 29.10 0.16 -0.42 16 26 C -0.24 -3.78 4.59 -20.14 -0.09 -3.87 16 27 C 0.06 1.03 11.96 85.23 1.02 2.04 16 28 N -0.34 -7.07 12.70 -57.03 -0.72 -7.79 16 29 N -0.48 -7.61 7.36 -57.59 -0.42 -8.03 16 30 H 0.45 4.52 8.96 -213.33 -1.91 2.60 16 31 C 0.07 1.08 11.90 83.54 0.99 2.07 16 32 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 33 H -0.03 -1.94 8.11 -2.38 -0.02 -1.96 16 34 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.10 3.34 5.97 -2.39 -0.01 3.32 16 36 H 0.05 2.20 7.35 -2.39 -0.02 2.18 16 37 H 0.10 2.74 6.13 -2.39 -0.01 2.73 16 38 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.10 2.51 6.28 -2.39 -0.01 2.50 16 40 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.50 5.92 -2.39 -0.01 1.49 16 43 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.20 2.47 8.06 -2.91 -0.02 2.45 16 48 H 0.20 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -86.81 383.95 1.83 -84.97 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -0.92 Total: 13.82 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 5.94 Total: 6.76 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -5.13 Total: -107.67 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.09 Total: -44.41 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -86.81 1.83 -84.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269658465.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.367 kcal (2) G-P(sol) polarization free energy of solvation -86.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds