Wall clock time and date at job start Sat Apr 11 2020 07:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99839 * 2 1 4 4 H 1.48504 * 109.47202 * 240.00079 * 3 2 1 5 5 H 1.48495 * 109.47056 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46875 * 120.00268 * 3 2 1 7 7 C 1.37880 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00425 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99460 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47109 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47147 * 179.97438 * 10 9 7 12 12 C 1.46929 * 124.37595 * 90.00389 * 11 10 9 13 13 C 1.54800 * 105.54155 * 163.27042 * 12 11 10 14 14 C 1.53211 * 101.39077 * 24.16522 * 13 12 11 15 15 C 1.53703 * 111.53863 * 214.19382 * 14 13 12 16 16 C 1.54580 * 102.71063 * 205.82969 * 15 14 13 17 17 N 1.47133 * 107.32799 * 21.21203 * 16 15 14 18 18 C 1.34780 * 125.60629 * 180.84524 * 17 16 15 19 19 O 1.21280 * 120.00423 * 179.69074 * 18 17 16 20 20 C 1.50701 * 119.99795 * 359.69751 * 18 17 16 21 21 C 1.50703 * 109.47064 * 179.97438 * 20 18 17 22 22 C 1.39860 * 125.89944 * 124.99977 * 21 20 18 23 23 C 1.35317 * 107.92487 * 179.97438 * 22 21 20 24 24 N 1.34949 * 107.73956 * 359.97438 * 23 22 21 25 25 H 0.97005 * 126.03679 * 180.02562 * 24 23 22 26 26 N 1.30841 * 125.89449 * 304.68832 * 21 20 18 27 27 C 1.47707 * 108.78976 * 0.58550 * 17 16 15 28 28 C 1.34892 * 124.38142 * 270.02198 * 11 10 9 29 29 O 1.21280 * 125.21786 * 1.23147 * 28 11 10 30 30 H 0.97006 * 119.99983 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47285 * 60.00256 * 9 7 2 32 32 H 1.09007 * 109.47443 * 300.00074 * 9 7 2 33 33 H 1.08998 * 109.46985 * 59.99892 * 10 9 7 34 34 H 1.08997 * 109.46864 * 300.00275 * 10 9 7 35 35 H 1.08999 * 110.23527 * 44.25347 * 12 11 10 36 36 H 1.09004 * 110.30401 * 282.32630 * 12 11 10 37 37 H 1.08996 * 111.03981 * 266.13025 * 13 12 11 38 38 H 1.09004 * 111.07106 * 142.20660 * 13 12 11 39 39 H 1.08997 * 110.75102 * 324.35170 * 15 14 13 40 40 H 1.09001 * 110.75249 * 87.51803 * 15 14 13 41 41 H 1.08992 * 109.97889 * 261.71831 * 16 15 14 42 42 H 1.08995 * 109.76259 * 140.58663 * 16 15 14 43 43 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 44 44 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 45 45 H 1.08009 * 126.04136 * 0.02562 * 22 21 20 46 46 H 1.07996 * 126.13371 * 180.02562 * 23 22 21 47 47 H 1.08994 * 110.39067 * 96.42779 * 27 17 16 48 48 H 1.08998 * 110.39295 * 218.81747 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 0.0001 12 6 1.0976 -5.6496 -1.2122 13 6 0.7630 -7.0878 -0.7476 14 6 0.4342 -6.8592 0.7312 15 6 0.8751 -8.0495 1.5979 16 6 -0.0816 -7.9614 2.8089 17 7 -1.2535 -7.1790 2.3855 18 6 -2.3092 -6.8645 3.1621 19 8 -3.2215 -6.2068 2.7081 20 6 -2.3561 -7.3300 4.5946 21 6 -3.6311 -6.8484 5.2378 22 6 -4.5807 -7.6512 5.8779 23 6 -5.5750 -6.8474 6.3209 24 7 -5.2652 -5.5807 5.9738 25 1 -5.7967 -4.7912 6.1614 26 7 -4.0379 -5.6064 5.2988 27 6 -1.0798 -6.7895 0.9714 28 6 1.1319 -5.5899 1.1137 29 8 1.3248 -5.2127 2.2501 30 1 -0.4850 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 2.8719 -3.6043 0.8894 34 1 2.8719 -3.6043 -0.8905 35 1 1.9114 -5.6674 -1.9372 36 1 0.2159 -5.1793 -1.6476 37 1 1.6247 -7.7457 -0.8598 38 1 -0.1001 -7.4821 -1.2840 39 1 0.7398 -8.9887 1.0617 40 1 1.9116 -7.9335 1.9148 41 1 0.4158 -7.4630 3.6409 42 1 -0.3924 -8.9627 3.1066 43 1 -2.3228 -8.4191 4.6240 44 1 -1.5010 -6.9256 5.1363 45 1 -4.5292 -8.7234 5.9983 46 1 -6.4579 -7.1628 6.8569 47 1 -1.6006 -7.4894 0.3180 48 1 -1.4437 -5.7749 0.8094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269665013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:25 Heat of formation + Delta-G solvation = 12.679858 kcal Electronic energy + Delta-G solvation = -30611.045479 eV Core-core repulsion = 26474.634106 eV Total energy + Delta-G solvation = -4136.411373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31715 -41.03082 -39.14743 -36.91446 -36.00046 -33.85429 -33.06369 -32.36908 -30.53764 -30.01510 -29.38964 -28.73469 -27.70141 -25.25198 -24.43327 -22.78230 -21.92499 -21.71988 -20.47687 -20.35217 -18.96967 -18.60720 -18.19660 -17.11394 -16.58508 -16.25780 -15.81268 -15.53929 -15.20990 -14.95059 -14.61732 -14.38297 -14.14246 -13.87701 -13.80913 -13.65594 -13.29219 -13.11059 -12.84173 -12.71105 -12.65676 -12.63289 -12.34848 -12.25684 -11.98121 -11.87717 -11.53085 -11.29925 -11.01708 -10.88750 -10.86616 -10.66890 -10.64824 -9.96734 -9.82814 -9.80491 -9.43039 -9.33476 -9.07837 -8.81921 -8.59032 -8.33374 -8.00435 -5.97614 -4.01971 1.85241 2.56224 2.75378 2.81606 2.94612 3.11157 3.35252 3.39541 3.41318 3.53589 4.18994 4.31636 4.36623 4.47269 4.48577 4.63564 4.74997 4.82778 4.97867 5.00802 5.07870 5.25307 5.33396 5.37688 5.38174 5.45372 5.50792 5.58340 5.61252 5.63131 5.68892 5.74580 5.83138 5.87488 5.92622 6.03013 6.08043 6.25209 6.46227 6.49554 6.83078 7.00596 7.20194 7.51270 7.54254 7.64805 7.69723 7.87318 8.01447 8.28169 8.36845 8.66756 9.04630 9.61904 11.13552 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.009249 B = 0.003001 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3026.767335 B = 9328.830533 C =11682.985547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.012 3.988 10 C 0.129 3.871 11 N -0.612 5.612 12 C 0.100 3.900 13 C -0.117 4.117 14 C -0.115 4.115 15 C -0.105 4.105 16 C 0.103 3.897 17 N -0.617 5.617 18 C 0.534 3.466 19 O -0.521 6.521 20 C -0.054 4.054 21 C 0.083 3.917 22 C -0.267 4.267 23 C 0.052 3.948 24 N -0.477 5.477 25 H 0.439 0.561 26 N -0.255 5.255 27 C 0.135 3.865 28 C 0.528 3.472 29 O -0.520 6.520 30 H 0.262 0.738 31 H 0.017 0.983 32 H 0.020 0.980 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.147 0.853 46 H 0.175 0.825 47 H 0.079 0.921 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.275 -24.595 6.249 25.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.026 4.026 10 C 0.009 3.991 11 N -0.345 5.345 12 C -0.024 4.024 13 C -0.155 4.155 14 C -0.119 4.119 15 C -0.143 4.143 16 C -0.020 4.020 17 N -0.352 5.352 18 C 0.321 3.679 19 O -0.395 6.395 20 C -0.096 4.096 21 C -0.085 4.085 22 C -0.297 4.297 23 C -0.096 4.096 24 N -0.185 5.185 25 H 0.283 0.717 26 N -0.078 5.078 27 C 0.012 3.988 28 C 0.314 3.686 29 O -0.395 6.395 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.165 0.835 46 H 0.192 0.808 47 H 0.097 0.903 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.597 -22.607 6.364 24.143 hybrid contribution -0.100 0.608 0.228 0.657 sum -5.697 -21.999 6.592 23.662 Atomic orbital electron populations 1.69971 1.06101 1.26815 1.50016 1.25011 0.94835 0.99296 0.95119 0.86619 0.79538 0.82994 0.78610 1.20193 1.21259 1.20160 1.21030 0.92931 0.90704 1.51657 0.92558 1.19399 0.94407 0.91050 0.97749 1.21803 0.94976 0.80983 1.01305 1.48678 1.56227 1.23563 1.06042 1.22124 1.00923 0.91012 0.88327 1.22471 1.03014 0.97106 0.92897 1.21611 0.96692 0.96226 0.97412 1.22365 1.00110 0.96780 0.95041 1.22102 0.86211 0.95338 0.98374 1.48430 1.19997 1.54626 1.12152 1.19971 0.81026 0.79814 0.87096 1.90769 1.36461 1.37953 1.74366 1.19986 0.94839 1.02387 0.92355 1.21566 0.96764 0.91190 0.98967 1.21344 0.96882 1.00711 1.10769 1.22536 1.00617 0.85245 1.01179 1.46439 1.18479 1.08092 1.45483 0.71748 1.77541 0.95662 1.20270 1.14307 1.21847 0.92264 1.02237 0.82443 1.19881 0.78810 0.84941 0.84989 1.90698 1.56606 1.71566 1.20669 0.92850 0.96498 0.96136 0.91194 0.91595 0.90406 0.90926 0.89470 0.88976 0.89531 0.89467 0.90457 0.91162 0.87068 0.87063 0.83541 0.80811 0.90317 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.95 13.29 55.43 0.74 -27.22 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -15.26 9.11 -34.44 -0.31 -15.57 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.01 0.32 5.30 -27.88 -0.15 0.17 16 10 C 0.13 2.77 5.88 -4.04 -0.02 2.75 16 11 N -0.61 -11.07 2.95 -172.57 -0.51 -11.58 16 12 C 0.10 1.29 7.37 -2.86 -0.02 1.27 16 13 C -0.12 -1.09 6.26 -25.67 -0.16 -1.25 16 14 C -0.12 -1.45 0.67 -155.38 -0.10 -1.55 16 15 C -0.10 -0.98 5.80 -25.54 -0.15 -1.12 16 16 C 0.10 1.03 6.22 -2.87 -0.02 1.01 16 17 N -0.62 -8.47 3.34 -170.96 -0.57 -9.04 16 18 C 0.53 8.38 7.84 -10.98 -0.09 8.29 16 19 O -0.52 -10.62 15.85 5.56 0.09 -10.53 16 20 C -0.05 -0.63 5.47 -29.03 -0.16 -0.79 16 21 C 0.08 1.14 6.01 -82.41 -0.50 0.64 16 22 C -0.27 -2.78 10.72 -40.02 -0.43 -3.21 16 23 C 0.05 0.46 11.99 -17.22 -0.21 0.26 16 24 N -0.48 -5.46 7.36 30.44 0.22 -5.24 16 25 H 0.44 3.66 8.96 -182.60 -1.64 2.02 16 26 N -0.25 -4.11 12.06 33.67 0.41 -3.70 16 27 C 0.14 1.87 5.89 -3.15 -0.02 1.85 16 28 C 0.53 9.65 6.77 -11.36 -0.08 9.57 16 29 O -0.52 -11.64 17.26 5.56 0.10 -11.54 16 30 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.58 7.96 -51.93 -0.41 1.16 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.64 7.96 -51.93 -0.41 0.22 16 38 H 0.09 0.66 7.63 -51.93 -0.40 0.26 16 39 H 0.09 0.54 8.04 -51.93 -0.42 0.13 16 40 H 0.09 0.84 8.00 -51.93 -0.42 0.42 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.11 0.84 8.12 -51.93 -0.42 0.42 16 44 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.15 1.09 8.06 -52.48 -0.42 0.66 16 46 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 47 H 0.08 0.88 7.74 -51.93 -0.40 0.47 16 48 H 0.08 1.49 7.94 -51.93 -0.41 1.08 16 LS Contribution 399.39 15.07 6.02 6.02 Total: -1.00 -41.98 399.39 -9.74 -51.72 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.70 Total: -0.13 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -2.51 Total: 3.99 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.29 Total: -56.78 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: 0.18 Total: -22.07 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -41.98 -9.74 -51.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269665013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.397 kcal (2) G-P(sol) polarization free energy of solvation -41.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds