Wall clock time and date at job start Sat Apr 11 2020 07:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99839 * 2 1 4 4 H 1.48504 * 109.47202 * 240.00079 * 3 2 1 5 5 H 1.48495 * 109.47056 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46875 * 120.00268 * 3 2 1 7 7 C 1.37880 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00425 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99460 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47109 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47147 * 179.97438 * 10 9 7 12 12 C 1.46929 * 124.37595 * 90.00389 * 11 10 9 13 13 C 1.54800 * 105.54155 * 163.27042 * 12 11 10 14 14 C 1.53211 * 101.39077 * 24.16522 * 13 12 11 15 15 C 1.53703 * 111.53863 * 214.19382 * 14 13 12 16 16 C 1.54580 * 102.71063 * 205.82969 * 15 14 13 17 17 N 1.47133 * 107.32799 * 21.21203 * 16 15 14 18 18 C 1.34780 * 125.60629 * 180.84524 * 17 16 15 19 19 O 1.21280 * 120.00423 * 179.69074 * 18 17 16 20 20 C 1.50701 * 119.99795 * 359.69751 * 18 17 16 21 21 C 1.50703 * 109.47064 * 179.97438 * 20 18 17 22 22 C 1.39860 * 125.89944 * 124.99977 * 21 20 18 23 23 C 1.35317 * 107.92487 * 179.97438 * 22 21 20 24 24 N 1.34949 * 107.73956 * 359.97438 * 23 22 21 25 25 H 0.97005 * 126.03679 * 180.02562 * 24 23 22 26 26 N 1.30841 * 125.89449 * 304.68832 * 21 20 18 27 27 C 1.47707 * 108.78976 * 0.58550 * 17 16 15 28 28 C 1.34892 * 124.38142 * 270.02198 * 11 10 9 29 29 O 1.21280 * 125.21786 * 1.23147 * 28 11 10 30 30 H 0.97006 * 119.99983 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47285 * 60.00256 * 9 7 2 32 32 H 1.09007 * 109.47443 * 300.00074 * 9 7 2 33 33 H 1.08998 * 109.46985 * 59.99892 * 10 9 7 34 34 H 1.08997 * 109.46864 * 300.00275 * 10 9 7 35 35 H 1.08999 * 110.23527 * 44.25347 * 12 11 10 36 36 H 1.09004 * 110.30401 * 282.32630 * 12 11 10 37 37 H 1.08996 * 111.03981 * 266.13025 * 13 12 11 38 38 H 1.09004 * 111.07106 * 142.20660 * 13 12 11 39 39 H 1.08997 * 110.75102 * 324.35170 * 15 14 13 40 40 H 1.09001 * 110.75249 * 87.51803 * 15 14 13 41 41 H 1.08992 * 109.97889 * 261.71831 * 16 15 14 42 42 H 1.08995 * 109.76259 * 140.58663 * 16 15 14 43 43 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 44 44 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 45 45 H 1.08009 * 126.04136 * 0.02562 * 22 21 20 46 46 H 1.07996 * 126.13371 * 180.02562 * 23 22 21 47 47 H 1.08994 * 110.39067 * 96.42779 * 27 17 16 48 48 H 1.08998 * 110.39295 * 218.81747 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 0.0001 12 6 1.0976 -5.6496 -1.2122 13 6 0.7630 -7.0878 -0.7476 14 6 0.4342 -6.8592 0.7312 15 6 0.8751 -8.0495 1.5979 16 6 -0.0816 -7.9614 2.8089 17 7 -1.2535 -7.1790 2.3855 18 6 -2.3092 -6.8645 3.1621 19 8 -3.2215 -6.2068 2.7081 20 6 -2.3561 -7.3300 4.5946 21 6 -3.6311 -6.8484 5.2378 22 6 -4.5807 -7.6512 5.8779 23 6 -5.5750 -6.8474 6.3209 24 7 -5.2652 -5.5807 5.9738 25 1 -5.7967 -4.7912 6.1614 26 7 -4.0379 -5.6064 5.2988 27 6 -1.0798 -6.7895 0.9714 28 6 1.1319 -5.5899 1.1137 29 8 1.3248 -5.2127 2.2501 30 1 -0.4850 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 2.8719 -3.6043 0.8894 34 1 2.8719 -3.6043 -0.8905 35 1 1.9114 -5.6674 -1.9372 36 1 0.2159 -5.1793 -1.6476 37 1 1.6247 -7.7457 -0.8598 38 1 -0.1001 -7.4821 -1.2840 39 1 0.7398 -8.9887 1.0617 40 1 1.9116 -7.9335 1.9148 41 1 0.4158 -7.4630 3.6409 42 1 -0.3924 -8.9627 3.1066 43 1 -2.3228 -8.4191 4.6240 44 1 -1.5010 -6.9256 5.1363 45 1 -4.5292 -8.7234 5.9983 46 1 -6.4579 -7.1628 6.8569 47 1 -1.6006 -7.4894 0.3180 48 1 -1.4437 -5.7749 0.8094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269665013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:25 Heat of formation + Delta-G solvation = -19.961882 kcal Electronic energy + Delta-G solvation = -30612.460931 eV Core-core repulsion = 26474.634106 eV Total energy + Delta-G solvation = -4137.826825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.33549 -42.03926 -40.36847 -38.15258 -37.47504 -35.72724 -34.27850 -33.79928 -31.97407 -30.84854 -30.49905 -30.01671 -28.75541 -27.10361 -25.67926 -23.95856 -23.43269 -22.55713 -21.83225 -21.35922 -20.11291 -19.79935 -19.01029 -18.73606 -18.21507 -17.34962 -17.17594 -16.95385 -16.64899 -16.30866 -16.05381 -15.67759 -15.17747 -14.90689 -14.78584 -14.64961 -14.51766 -14.38756 -14.35850 -14.00550 -13.86253 -13.70418 -13.68659 -13.53112 -13.15272 -12.98208 -12.94245 -12.86509 -12.59191 -12.37898 -12.06173 -12.01096 -11.79849 -11.66685 -11.55369 -11.47469 -10.99276 -10.67593 -10.59928 -10.40610 -9.68934 -9.62253 -9.55976 -8.28638 -6.43567 1.02359 1.33712 1.39416 1.46920 1.51322 1.60487 1.71140 2.03786 2.11667 2.19717 2.37465 3.04337 3.24525 3.31265 3.38871 3.62618 3.83718 3.88622 4.01179 4.03824 4.24975 4.31007 4.32020 4.35955 4.44308 4.47210 4.59327 4.60432 4.64460 4.73061 4.73141 4.81053 4.84493 4.86070 4.96982 5.01450 5.10920 5.13520 5.24659 5.27146 5.30681 5.38993 5.55249 5.69680 5.77272 6.08592 6.28470 6.48392 6.50994 6.72880 6.77963 7.14386 7.20581 7.27430 8.83488 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.009249 B = 0.003001 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3026.767335 B = 9328.830533 C =11682.985547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.975 3.025 4 H -0.254 1.254 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.024 3.976 10 C 0.144 3.856 11 N -0.623 5.623 12 C 0.086 3.914 13 C -0.095 4.095 14 C -0.107 4.107 15 C -0.094 4.094 16 C 0.094 3.906 17 N -0.619 5.619 18 C 0.521 3.479 19 O -0.584 6.584 20 C -0.047 4.047 21 C 0.064 3.936 22 C -0.279 4.279 23 C 0.066 3.934 24 N -0.481 5.481 25 H 0.447 0.553 26 N -0.335 5.335 27 C 0.131 3.869 28 C 0.509 3.491 29 O -0.577 6.577 30 H 0.264 0.736 31 H -0.005 1.005 32 H -0.039 1.039 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.138 0.862 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.120 0.880 43 H 0.160 0.840 44 H 0.112 0.888 45 H 0.180 0.820 46 H 0.224 0.776 47 H 0.117 0.883 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.038 -28.433 5.561 29.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.799 3.201 4 H -0.178 1.178 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.090 0.910 9 C -0.014 4.014 10 C 0.022 3.978 11 N -0.355 5.355 12 C -0.036 4.036 13 C -0.133 4.133 14 C -0.111 4.111 15 C -0.132 4.132 16 C -0.027 4.027 17 N -0.353 5.353 18 C 0.310 3.690 19 O -0.463 6.463 20 C -0.088 4.088 21 C -0.103 4.103 22 C -0.308 4.308 23 C -0.081 4.081 24 N -0.190 5.190 25 H 0.292 0.708 26 N -0.159 5.159 27 C 0.008 3.992 28 C 0.297 3.703 29 O -0.456 6.456 30 H 0.072 0.928 31 H 0.014 0.986 32 H -0.021 1.021 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.075 0.925 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.156 0.844 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.138 0.862 43 H 0.178 0.822 44 H 0.130 0.870 45 H 0.197 0.803 46 H 0.240 0.760 47 H 0.135 0.865 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.310 -26.505 5.639 27.439 hybrid contribution -0.559 1.844 0.470 1.983 sum -4.869 -24.661 6.109 25.869 Atomic orbital electron populations 1.70152 1.08327 1.28033 1.51135 1.26149 0.95766 1.04061 0.94264 0.85351 0.78120 0.77100 0.79577 1.17850 1.20944 1.19328 1.21538 0.93860 0.91635 1.51400 0.91042 1.19205 0.94589 0.93851 0.93753 1.21330 0.93628 0.80997 1.01828 1.48834 1.55746 1.22505 1.08393 1.22521 1.01316 0.92860 0.86868 1.22609 1.05926 0.94903 0.89842 1.21591 0.94729 0.94267 1.00550 1.22517 0.99604 0.96957 0.94086 1.22438 0.85019 0.96830 0.98435 1.48633 1.20375 1.54205 1.12040 1.20771 0.80650 0.78988 0.88602 1.90727 1.39030 1.40796 1.75793 1.20124 0.94377 1.05081 0.89247 1.22066 0.97873 0.91259 0.99062 1.21798 0.96192 1.02294 1.10478 1.23381 1.01434 0.83788 0.99478 1.46494 1.17628 1.09667 1.45222 0.70843 1.77437 0.98453 1.22590 1.17437 1.21947 0.93553 0.99948 0.83750 1.21079 0.78145 0.86886 0.84155 1.90648 1.58635 1.73437 1.22925 0.92759 0.98641 1.02090 0.92863 0.88616 0.87589 0.92467 0.85571 0.85636 0.84360 0.89546 0.92358 0.86192 0.82228 0.87014 0.80260 0.75958 0.86519 0.95750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.85 13.29 21.45 0.28 -61.57 16 2 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.98 46.59 29.54 68.60 2.03 48.62 16 4 H -0.25 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.55 -33.02 9.11 25.60 0.23 -32.79 16 8 H 0.07 4.00 7.74 -2.91 -0.02 3.98 16 9 C 0.02 1.40 5.30 29.85 0.16 1.56 16 10 C 0.14 6.47 5.88 86.38 0.51 6.97 16 11 N -0.62 -23.27 2.95 -818.20 -2.41 -25.68 16 12 C 0.09 2.12 7.37 86.91 0.64 2.76 16 13 C -0.10 -1.40 6.26 31.28 0.20 -1.21 16 14 C -0.11 -2.54 0.67 -52.75 -0.04 -2.57 16 15 C -0.09 -1.39 5.80 31.37 0.18 -1.21 16 16 C 0.09 1.68 6.22 86.80 0.54 2.22 16 17 N -0.62 -17.06 3.34 -813.17 -2.72 -19.78 16 18 C 0.52 17.15 7.84 87.66 0.69 17.84 16 19 O -0.58 -25.88 15.85 -3.03 -0.05 -25.93 16 20 C -0.05 -1.11 5.47 29.10 0.16 -0.95 16 21 C 0.06 1.80 6.01 43.10 0.26 2.06 16 22 C -0.28 -5.36 10.72 21.99 0.24 -5.13 16 23 C 0.07 1.09 11.99 83.54 1.00 2.10 16 24 N -0.48 -11.41 7.36 -57.59 -0.42 -11.84 16 25 H 0.45 8.00 8.96 -213.32 -1.91 6.09 16 26 N -0.33 -11.60 12.06 -47.39 -0.57 -12.17 16 27 C 0.13 3.67 5.89 86.30 0.51 4.18 16 28 C 0.51 19.40 6.77 87.36 0.59 19.99 16 29 O -0.58 -27.85 17.26 -3.03 -0.05 -27.90 16 30 H 0.26 16.36 8.31 -92.70 -0.77 15.59 16 31 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H -0.04 -2.73 8.14 -2.38 -0.02 -2.75 16 33 H 0.05 2.54 7.96 -2.39 -0.02 2.52 16 34 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 35 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.13 1.01 7.96 -2.39 -0.02 0.99 16 38 H 0.13 1.12 7.63 -2.38 -0.02 1.11 16 39 H 0.14 0.73 8.04 -2.39 -0.02 0.71 16 40 H 0.09 1.38 8.00 -2.39 -0.02 1.36 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.16 1.98 8.12 -2.39 -0.02 1.96 16 44 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.18 2.05 8.06 -2.91 -0.02 2.02 16 46 H 0.22 1.20 8.06 -2.91 -0.02 1.18 16 47 H 0.12 2.36 7.74 -2.39 -0.02 2.34 16 48 H 0.02 0.95 7.94 -2.39 -0.02 0.93 16 Total: -1.00 -106.82 399.39 1.48 -105.35 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -0.94 Total: 14.89 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 6.33 Total: 16.01 kcal Atomic # 7 Polarization: -125.20 SS G_CDS: -5.84 Total: -131.04 kcal Atomic # 8 Polarization: -53.72 SS G_CDS: -0.10 Total: -53.82 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -106.82 1.48 -105.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269665013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.385 kcal (2) G-P(sol) polarization free energy of solvation -106.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds