Wall clock time and date at job start Sat Apr 11 2020 07:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00206 * 2 1 4 4 H 1.48497 * 109.47213 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47233 * 300.00382 * 3 2 1 6 6 H 1.48505 * 109.46560 * 60.00242 * 3 2 1 7 7 C 1.37881 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00283 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99656 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46850 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47192 * 180.02562 * 10 9 7 12 12 C 1.46850 * 124.36583 * 270.00264 * 11 10 9 13 13 C 1.54640 * 105.50306 * 196.89301 * 12 11 10 14 14 C 1.53895 * 101.59273 * 335.22081 * 13 12 11 15 15 C 1.53618 * 110.46565 * 264.57331 * 14 13 12 16 16 C 1.55326 * 102.81158 * 217.13939 * 15 14 13 17 17 C 1.54982 * 101.66755 * 34.66363 * 16 15 14 18 18 N 1.46233 * 110.90631 * 144.74608 * 14 13 12 19 19 C 1.34774 * 125.81876 * 299.84541 * 18 14 13 20 20 O 1.21286 * 119.99519 * 359.71715 * 19 18 14 21 21 C 1.50694 * 120.00713 * 179.71768 * 19 18 14 22 22 C 1.50699 * 109.47843 * 179.97438 * 21 19 18 23 23 C 1.39869 * 125.90295 * 124.99796 * 22 21 19 24 24 C 1.35312 * 107.91889 * 180.22479 * 23 22 21 25 25 N 1.34951 * 107.74772 * 359.61173 * 24 23 22 26 26 H 0.97001 * 126.03184 * 180.15526 * 25 24 23 27 27 N 1.30837 * 125.89517 * 304.98057 * 22 21 19 28 28 C 1.34653 * 124.37206 * 90.01876 * 11 10 9 29 29 O 1.21281 * 125.07033 * 359.18392 * 28 11 10 30 30 H 0.97006 * 119.99461 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.46942 * 60.00376 * 9 7 2 32 32 H 1.09003 * 109.47055 * 300.00055 * 9 7 2 33 33 H 1.08999 * 109.47277 * 60.00292 * 10 9 7 34 34 H 1.09003 * 109.47100 * 299.99738 * 10 9 7 35 35 H 1.09005 * 110.24078 * 315.90055 * 12 11 10 36 36 H 1.09001 * 110.24367 * 77.79839 * 12 11 10 37 37 H 1.09000 * 111.00364 * 217.14497 * 13 12 11 38 38 H 1.08999 * 111.00263 * 93.29850 * 13 12 11 39 39 H 1.08999 * 110.91216 * 98.71194 * 15 14 13 40 40 H 1.09009 * 110.68365 * 335.45856 * 15 14 13 41 41 H 1.08996 * 110.99032 * 276.57531 * 16 15 14 42 42 H 1.08993 * 110.98997 * 152.75813 * 16 15 14 43 43 H 1.08994 * 110.36586 * 204.55957 * 17 16 15 44 44 H 1.09003 * 110.35988 * 82.24951 * 17 16 15 45 45 H 1.09002 * 109.47210 * 59.99659 * 21 19 18 46 46 H 1.09007 * 109.47214 * 299.99761 * 21 19 18 47 47 H 1.08002 * 126.03560 * 359.95589 * 23 22 21 48 48 H 1.08008 * 126.12506 * 179.75891 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 1.0978 -5.6490 1.2107 13 6 0.7679 -7.0867 0.7465 14 6 0.4229 -6.8615 -0.7363 15 6 -1.0953 -6.7139 -0.9181 16 6 -1.3527 -7.4390 -2.2674 17 6 -0.3092 -8.5835 -2.2122 18 7 0.8707 -7.9886 -1.5533 19 6 2.1428 -8.4155 -1.6789 20 8 3.0348 -7.8459 -1.0864 21 6 2.4572 -9.6003 -2.5554 22 6 3.9396 -9.8695 -2.5239 23 6 4.5456 -11.0844 -2.1878 24 6 5.8858 -10.9190 -2.2736 25 7 6.1194 -9.6469 -2.6590 26 1 6.9904 -9.2456 -2.8046 27 7 4.8820 -9.0071 -2.8065 28 6 1.1333 -5.5890 -1.1129 29 8 1.3347 -5.2130 -2.2482 30 1 -0.4849 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 2.8718 -3.6043 0.8895 34 1 2.8719 -3.6043 -0.8906 35 1 1.9106 -5.6644 1.9369 36 1 0.2148 -5.1792 1.6438 37 1 -0.0881 -7.4861 1.2904 38 1 1.6345 -7.7396 0.8512 39 1 -1.3790 -5.6635 -0.9837 40 1 -1.6301 -7.2071 -0.1062 41 1 -1.1599 -6.7754 -3.1102 42 1 -2.3666 -7.8368 -2.3096 43 1 -0.0549 -8.9139 -3.2192 44 1 -0.6919 -9.4176 -1.6239 45 1 2.1487 -9.3870 -3.5789 46 1 1.9207 -10.4757 -2.1892 47 1 4.0342 -11.9927 -1.9051 48 1 6.6344 -11.6710 -2.0723 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269666221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:30 Heat of formation + Delta-G solvation = 17.279105 kcal Electronic energy + Delta-G solvation = -31265.550874 eV Core-core repulsion = 27129.338940 eV Total energy + Delta-G solvation = -4136.211934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42748 -41.05110 -38.74244 -37.05185 -35.81550 -33.67970 -33.09792 -31.90553 -31.62374 -30.07896 -29.19349 -28.51023 -27.67679 -25.05425 -24.21526 -22.54142 -21.89482 -21.79046 -21.27051 -20.06926 -19.19102 -18.30673 -18.26300 -17.12043 -16.49660 -16.33374 -15.64986 -15.48280 -15.19383 -14.81103 -14.55732 -14.46647 -14.19397 -13.73167 -13.71266 -13.57379 -13.45514 -13.07937 -12.90029 -12.74450 -12.63358 -12.45395 -12.39924 -12.18803 -11.89597 -11.64612 -11.37550 -11.23127 -11.17493 -10.91941 -10.72225 -10.68567 -10.58687 -9.92802 -9.82534 -9.76548 -9.53774 -9.47440 -9.13487 -8.88095 -8.42135 -8.32432 -7.86915 -5.97992 -4.00489 1.78691 2.44525 2.65438 2.74276 2.89159 3.32575 3.33991 3.40986 3.46026 3.69801 4.28180 4.36695 4.40707 4.49794 4.53662 4.58384 4.80917 4.87065 4.88428 4.94870 5.10785 5.14495 5.20916 5.34638 5.38340 5.42886 5.50986 5.53970 5.56699 5.70724 5.78302 5.81692 5.84153 5.89908 6.05819 6.09650 6.18983 6.35337 6.43974 6.61507 6.90355 7.13193 7.13642 7.46616 7.57973 7.61171 7.74302 7.95575 8.03046 8.22401 8.40486 8.82058 9.06488 9.63134 11.13614 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.002920 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.569333 B = 9586.696817 C =11022.849196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.013 3.987 10 C 0.131 3.869 11 N -0.605 5.605 12 C 0.107 3.893 13 C -0.135 4.135 14 C 0.134 3.866 15 C -0.112 4.112 16 C -0.132 4.132 17 C 0.100 3.900 18 N -0.600 5.600 19 C 0.531 3.469 20 O -0.507 6.507 21 C -0.052 4.052 22 C 0.082 3.918 23 C -0.267 4.267 24 C 0.052 3.948 25 N -0.477 5.477 26 H 0.439 0.561 27 N -0.254 5.254 28 C 0.523 3.477 29 O -0.524 6.524 30 H 0.260 0.740 31 H 0.020 0.980 32 H 0.017 0.983 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.147 0.853 48 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.676 -28.726 -1.860 28.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.025 4.025 10 C 0.011 3.989 11 N -0.337 5.337 12 C -0.018 4.018 13 C -0.174 4.174 14 C 0.044 3.956 15 C -0.150 4.150 16 C -0.170 4.170 17 C -0.023 4.023 18 N -0.336 5.336 19 C 0.318 3.682 20 O -0.381 6.381 21 C -0.094 4.094 22 C -0.086 4.086 23 C -0.296 4.296 24 C -0.095 4.095 25 N -0.185 5.185 26 H 0.282 0.718 27 N -0.077 5.077 28 C 0.307 3.693 29 O -0.399 6.399 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.127 0.873 46 H 0.130 0.870 47 H 0.165 0.835 48 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.562 -26.876 -2.506 27.038 hybrid contribution 0.743 0.317 0.312 0.866 sum 2.305 -26.559 -2.194 26.749 Atomic orbital electron populations 1.69986 1.06077 1.26483 1.50754 1.24996 0.94858 0.99266 0.95183 0.86501 0.80158 0.83608 0.77541 1.19660 1.20967 1.20998 1.21149 0.93123 0.90712 1.50809 0.92454 1.19412 0.94440 0.91067 0.97610 1.21774 0.94928 0.80804 1.01380 1.48403 1.55873 1.23480 1.05991 1.22004 1.00613 0.90609 0.88538 1.22948 1.03130 0.97606 0.93698 1.21131 0.95653 0.87056 0.91732 1.22535 0.90950 1.03108 0.98393 1.22843 0.98778 0.97095 0.98310 1.22439 0.85627 0.96377 0.97826 1.48167 1.06512 1.30898 1.48002 1.20030 0.80692 0.85103 0.82362 1.90794 1.44418 1.56781 1.46084 1.19972 0.90017 0.97781 1.01607 1.21541 0.94571 0.92093 1.00379 1.21343 0.92974 0.99703 1.15627 1.22544 0.97993 0.88311 1.00663 1.46439 1.08460 1.08947 1.54633 0.71753 1.77534 0.88506 1.19259 1.22400 1.20276 0.78912 0.85048 0.85037 1.90672 1.56824 1.71451 1.20980 0.93058 0.96146 0.96449 0.91745 0.91334 0.90644 0.90966 0.89288 0.89376 0.89189 0.89374 0.89790 0.89383 0.90291 0.90840 0.87258 0.87004 0.83527 0.80801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.62 13.29 55.43 0.74 -26.89 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.52 -15.38 9.11 -34.44 -0.31 -15.69 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 10 C 0.13 3.11 5.88 -4.04 -0.02 3.08 16 11 N -0.60 -12.51 2.94 -172.50 -0.51 -13.01 16 12 C 0.11 1.66 7.36 -2.99 -0.02 1.64 16 13 C -0.14 -1.76 6.19 -25.40 -0.16 -1.92 16 14 C 0.13 1.98 0.73 -132.41 -0.10 1.89 16 15 C -0.11 -1.30 6.07 -25.18 -0.15 -1.45 16 16 C -0.13 -1.25 7.10 -24.45 -0.17 -1.42 16 17 C 0.10 0.85 6.71 -2.36 -0.02 0.83 16 18 N -0.60 -7.92 2.90 -157.38 -0.46 -8.38 16 19 C 0.53 7.89 7.25 -10.99 -0.08 7.81 16 20 O -0.51 -9.90 14.09 5.55 0.08 -9.82 16 21 C -0.05 -0.55 5.30 -29.04 -0.15 -0.70 16 22 C 0.08 1.04 6.01 -82.41 -0.50 0.55 16 23 C -0.27 -2.56 10.72 -40.01 -0.43 -2.99 16 24 C 0.05 0.43 11.99 -17.22 -0.21 0.23 16 25 N -0.48 -5.09 7.36 30.45 0.22 -4.86 16 26 H 0.44 3.35 8.96 -182.61 -1.64 1.72 16 27 N -0.25 -3.85 12.05 33.67 0.41 -3.44 16 28 C 0.52 10.95 5.87 -11.13 -0.07 10.88 16 29 O -0.52 -13.20 17.61 5.56 0.10 -13.10 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.07 1.75 7.94 -51.93 -0.41 1.34 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.09 0.84 7.45 -51.93 -0.39 0.45 16 38 H 0.09 1.25 6.75 -51.93 -0.35 0.90 16 39 H 0.09 1.25 7.82 -51.93 -0.41 0.85 16 40 H 0.09 0.75 7.45 -51.92 -0.39 0.36 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.54 7.51 -51.93 -0.39 0.16 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.11 1.01 7.86 -51.93 -0.41 0.60 16 46 H 0.11 0.73 8.12 -51.93 -0.42 0.31 16 47 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 48 H 0.17 0.69 8.06 -52.48 -0.42 0.27 16 LS Contribution 395.31 15.07 5.96 5.96 Total: -1.00 -42.20 395.31 -9.68 -51.88 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.57 Total: -0.29 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -2.63 Total: 4.57 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.40 Total: -56.58 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.18 Total: -22.92 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -42.20 -9.68 -51.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269666221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.159 kcal (2) G-P(sol) polarization free energy of solvation -42.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds