Wall clock time and date at job start Sat Apr 11 2020 07:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00206 * 2 1 4 4 H 1.48497 * 109.47213 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47233 * 300.00382 * 3 2 1 6 6 H 1.48505 * 109.46560 * 60.00242 * 3 2 1 7 7 C 1.37881 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00283 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99656 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46850 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47192 * 180.02562 * 10 9 7 12 12 C 1.46850 * 124.36583 * 270.00264 * 11 10 9 13 13 C 1.54640 * 105.50306 * 196.89301 * 12 11 10 14 14 C 1.53895 * 101.59273 * 335.22081 * 13 12 11 15 15 C 1.53618 * 110.46565 * 264.57331 * 14 13 12 16 16 C 1.55326 * 102.81158 * 217.13939 * 15 14 13 17 17 C 1.54982 * 101.66755 * 34.66363 * 16 15 14 18 18 N 1.46233 * 110.90631 * 144.74608 * 14 13 12 19 19 C 1.34774 * 125.81876 * 299.84541 * 18 14 13 20 20 O 1.21286 * 119.99519 * 359.71715 * 19 18 14 21 21 C 1.50694 * 120.00713 * 179.71768 * 19 18 14 22 22 C 1.50699 * 109.47843 * 179.97438 * 21 19 18 23 23 C 1.39869 * 125.90295 * 124.99796 * 22 21 19 24 24 C 1.35312 * 107.91889 * 180.22479 * 23 22 21 25 25 N 1.34951 * 107.74772 * 359.61173 * 24 23 22 26 26 H 0.97001 * 126.03184 * 180.15526 * 25 24 23 27 27 N 1.30837 * 125.89517 * 304.98057 * 22 21 19 28 28 C 1.34653 * 124.37206 * 90.01876 * 11 10 9 29 29 O 1.21281 * 125.07033 * 359.18392 * 28 11 10 30 30 H 0.97006 * 119.99461 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.46942 * 60.00376 * 9 7 2 32 32 H 1.09003 * 109.47055 * 300.00055 * 9 7 2 33 33 H 1.08999 * 109.47277 * 60.00292 * 10 9 7 34 34 H 1.09003 * 109.47100 * 299.99738 * 10 9 7 35 35 H 1.09005 * 110.24078 * 315.90055 * 12 11 10 36 36 H 1.09001 * 110.24367 * 77.79839 * 12 11 10 37 37 H 1.09000 * 111.00364 * 217.14497 * 13 12 11 38 38 H 1.08999 * 111.00263 * 93.29850 * 13 12 11 39 39 H 1.08999 * 110.91216 * 98.71194 * 15 14 13 40 40 H 1.09009 * 110.68365 * 335.45856 * 15 14 13 41 41 H 1.08996 * 110.99032 * 276.57531 * 16 15 14 42 42 H 1.08993 * 110.98997 * 152.75813 * 16 15 14 43 43 H 1.08994 * 110.36586 * 204.55957 * 17 16 15 44 44 H 1.09003 * 110.35988 * 82.24951 * 17 16 15 45 45 H 1.09002 * 109.47210 * 59.99659 * 21 19 18 46 46 H 1.09007 * 109.47214 * 299.99761 * 21 19 18 47 47 H 1.08002 * 126.03560 * 359.95589 * 23 22 21 48 48 H 1.08008 * 126.12506 * 179.75891 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 1.0978 -5.6490 1.2107 13 6 0.7679 -7.0867 0.7465 14 6 0.4229 -6.8615 -0.7363 15 6 -1.0953 -6.7139 -0.9181 16 6 -1.3527 -7.4390 -2.2674 17 6 -0.3092 -8.5835 -2.2122 18 7 0.8707 -7.9886 -1.5533 19 6 2.1428 -8.4155 -1.6789 20 8 3.0348 -7.8459 -1.0864 21 6 2.4572 -9.6003 -2.5554 22 6 3.9396 -9.8695 -2.5239 23 6 4.5456 -11.0844 -2.1878 24 6 5.8858 -10.9190 -2.2736 25 7 6.1194 -9.6469 -2.6590 26 1 6.9904 -9.2456 -2.8046 27 7 4.8820 -9.0071 -2.8065 28 6 1.1333 -5.5890 -1.1129 29 8 1.3347 -5.2130 -2.2482 30 1 -0.4849 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 2.8718 -3.6043 0.8895 34 1 2.8719 -3.6043 -0.8906 35 1 1.9106 -5.6644 1.9369 36 1 0.2148 -5.1792 1.6438 37 1 -0.0881 -7.4861 1.2904 38 1 1.6345 -7.7396 0.8512 39 1 -1.3790 -5.6635 -0.9837 40 1 -1.6301 -7.2071 -0.1062 41 1 -1.1599 -6.7754 -3.1102 42 1 -2.3666 -7.8368 -2.3096 43 1 -0.0549 -8.9139 -3.2192 44 1 -0.6919 -9.4176 -1.6239 45 1 2.1487 -9.3870 -3.5789 46 1 1.9207 -10.4757 -2.1892 47 1 4.0342 -11.9927 -1.9051 48 1 6.6344 -11.6710 -2.0723 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269666221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:29 Heat of formation + Delta-G solvation = -14.929032 kcal Electronic energy + Delta-G solvation = -31266.947523 eV Core-core repulsion = 27129.338940 eV Total energy + Delta-G solvation = -4137.608584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.48067 -41.99419 -40.02934 -38.21762 -37.48973 -35.66910 -34.15110 -33.48597 -32.64560 -30.85890 -30.82087 -29.51458 -28.81139 -27.02972 -25.35672 -23.70834 -23.58219 -22.67122 -22.21567 -21.33747 -20.35562 -19.52941 -18.98479 -18.74685 -18.20453 -17.38183 -17.12805 -16.84324 -16.58872 -16.44101 -15.76173 -15.58596 -15.32639 -14.95308 -14.79548 -14.57956 -14.49052 -14.36116 -14.30701 -14.27839 -13.93057 -13.56490 -13.54267 -13.33978 -13.20807 -13.05879 -12.92449 -12.75995 -12.52694 -12.17282 -12.12945 -12.06420 -11.93517 -11.60714 -11.52028 -11.45644 -10.93509 -10.88160 -10.65500 -10.37605 -9.62303 -9.60438 -9.57777 -8.28869 -6.42004 1.03939 1.34202 1.36330 1.39552 1.49757 1.65180 1.77147 2.03983 2.09855 2.25380 2.38123 3.03863 3.24758 3.38412 3.51406 3.64579 3.76319 3.86438 3.98274 4.08837 4.12199 4.19145 4.27258 4.35620 4.48290 4.49589 4.56705 4.59481 4.74259 4.74705 4.78585 4.82546 4.84555 4.88323 4.94539 4.98939 5.10882 5.13509 5.25205 5.32170 5.36069 5.40321 5.53690 5.72645 5.75165 6.09850 6.24545 6.51116 6.52060 6.71469 6.80621 7.15875 7.21132 7.27450 8.83691 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.002920 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.569333 B = 9586.696817 C =11022.849196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.031 3.969 10 C 0.145 3.855 11 N -0.618 5.618 12 C 0.095 3.905 13 C -0.116 4.116 14 C 0.136 3.864 15 C -0.111 4.111 16 C -0.130 4.130 17 C 0.096 3.904 18 N -0.601 5.601 19 C 0.520 3.480 20 O -0.567 6.567 21 C -0.045 4.045 22 C 0.066 3.934 23 C -0.278 4.278 24 C 0.064 3.936 25 N -0.482 5.482 26 H 0.446 0.554 27 N -0.331 5.331 28 C 0.502 3.498 29 O -0.586 6.586 30 H 0.267 0.733 31 H -0.026 1.026 32 H 0.007 0.993 33 H 0.083 0.917 34 H 0.036 0.964 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.141 0.859 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.136 0.864 41 H 0.046 0.954 42 H 0.131 0.869 43 H 0.096 0.904 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.161 0.839 47 H 0.179 0.821 48 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.307 -32.068 -0.480 32.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.588 4.588 8 H 0.078 0.922 9 C -0.007 4.007 10 C 0.023 3.977 11 N -0.350 5.350 12 C -0.027 4.027 13 C -0.154 4.154 14 C 0.046 3.954 15 C -0.149 4.149 16 C -0.168 4.168 17 C -0.024 4.024 18 N -0.336 5.336 19 C 0.309 3.691 20 O -0.445 6.445 21 C -0.086 4.086 22 C -0.101 4.101 23 C -0.307 4.307 24 C -0.083 4.083 25 N -0.191 5.191 26 H 0.291 0.709 27 N -0.155 5.155 28 C 0.289 3.711 29 O -0.467 6.467 30 H 0.075 0.925 31 H -0.007 1.007 32 H 0.025 0.975 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.159 0.841 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.154 0.846 41 H 0.065 0.935 42 H 0.149 0.851 43 H 0.114 0.886 44 H 0.140 0.860 45 H 0.136 0.864 46 H 0.178 0.822 47 H 0.196 0.804 48 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.532 -30.269 -1.108 30.294 hybrid contribution 1.062 1.365 -0.145 1.736 sum 1.594 -28.903 -1.253 28.974 Atomic orbital electron populations 1.70109 1.07832 1.28007 1.50891 1.26009 0.95887 1.03486 0.94132 0.85301 0.78864 0.78144 0.78138 1.18788 1.20383 1.19290 1.21532 0.93528 0.91969 1.51777 0.92204 1.19152 0.94257 0.92593 0.94678 1.21298 0.94059 0.81724 1.00604 1.48580 1.55417 1.22583 1.08396 1.22377 1.01415 0.92101 0.86780 1.22973 1.04664 0.95308 0.92503 1.21182 0.96776 0.84372 0.93065 1.22652 0.88680 1.02005 1.01528 1.22893 1.01571 0.96749 0.95537 1.22865 0.83318 0.96776 0.99468 1.48388 1.07517 1.29943 1.47714 1.20883 0.80448 0.85729 0.82008 1.90760 1.46256 1.58847 1.48596 1.20137 0.89695 0.97576 1.01203 1.22058 0.95189 0.92993 0.99907 1.21785 0.93455 0.99782 1.15649 1.23353 0.98961 0.87829 0.98170 1.46498 1.07921 1.09850 1.54824 0.70941 1.77439 0.90527 1.22018 1.25543 1.21638 0.78260 0.87077 0.84078 1.90605 1.59261 1.73418 1.23376 0.92464 1.00749 0.97495 0.89901 0.94524 0.89735 0.89617 0.84143 0.90435 0.92646 0.84590 0.93524 0.85107 0.88615 0.85963 0.86365 0.82181 0.80384 0.76284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.02 13.29 21.45 0.28 -58.73 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.97 46.69 29.54 68.60 2.03 48.72 16 4 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.55 -33.99 9.11 25.60 0.23 -33.76 16 8 H 0.06 3.58 7.74 -2.91 -0.02 3.55 16 9 C 0.03 1.84 5.30 29.85 0.16 2.00 16 10 C 0.15 7.40 5.88 86.38 0.51 7.91 16 11 N -0.62 -27.14 2.94 -818.12 -2.41 -29.55 16 12 C 0.10 2.97 7.36 86.87 0.64 3.61 16 13 C -0.12 -2.79 6.19 31.45 0.19 -2.60 16 14 C 0.14 3.97 0.73 3.36 0.00 3.97 16 15 C -0.11 -2.38 6.07 31.60 0.19 -2.19 16 16 C -0.13 -2.16 7.10 32.07 0.23 -1.93 16 17 C 0.10 1.28 6.71 86.84 0.58 1.86 16 18 N -0.60 -15.05 2.90 -770.22 -2.23 -17.28 16 19 C 0.52 15.33 7.25 87.66 0.64 15.96 16 20 O -0.57 -23.09 14.09 -3.05 -0.04 -23.14 16 21 C -0.05 -0.88 5.30 29.10 0.15 -0.73 16 22 C 0.07 1.62 6.01 43.10 0.26 1.88 16 23 C -0.28 -4.69 10.72 21.99 0.24 -4.45 16 24 C 0.06 0.94 11.99 83.54 1.00 1.94 16 25 N -0.48 -10.37 7.36 -57.59 -0.42 -10.79 16 26 H 0.45 7.15 8.96 -213.33 -1.91 5.23 16 27 N -0.33 -10.46 12.05 -47.39 -0.57 -11.03 16 28 C 0.50 22.44 5.87 87.62 0.51 22.95 16 29 O -0.59 -32.42 17.61 -3.03 -0.05 -32.47 16 30 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 31 H -0.03 -1.75 8.14 -2.39 -0.02 -1.77 16 32 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.08 3.84 8.14 -2.39 -0.02 3.82 16 34 H 0.04 2.06 7.94 -2.39 -0.02 2.04 16 35 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.14 1.94 7.45 -2.39 -0.02 1.92 16 38 H 0.08 2.09 6.75 -2.39 -0.02 2.07 16 39 H 0.05 1.59 7.82 -2.39 -0.02 1.57 16 40 H 0.14 1.63 7.45 -2.38 -0.02 1.62 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.10 0.99 7.51 -2.39 -0.02 0.97 16 44 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.12 2.04 7.86 -2.39 -0.02 2.02 16 46 H 0.16 1.40 8.12 -2.38 -0.02 1.38 16 47 H 0.18 1.67 8.06 -2.91 -0.02 1.64 16 48 H 0.22 0.91 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -104.36 395.31 1.65 -102.71 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -0.93 Total: 14.46 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 6.00 Total: 17.10 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -5.35 Total: -127.38 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -0.10 Total: -55.61 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -104.36 1.65 -102.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269666221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.776 kcal (2) G-P(sol) polarization free energy of solvation -104.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds