Wall clock time and date at job start Sat Apr 11 2020 07:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99859 * 2 1 4 4 H 1.48496 * 109.46971 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47460 * 300.00552 * 3 2 1 6 6 H 1.48506 * 109.46721 * 60.00476 * 3 2 1 7 7 C 1.37875 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99457 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00522 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47407 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47278 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00270 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99797 * 0.02562 * 12 11 10 14 14 C 1.50708 * 120.00421 * 179.97438 * 12 11 10 15 15 H 1.08997 * 115.54651 * 309.14532 * 14 12 11 16 16 C 1.53023 * 117.52693 * 163.41823 * 14 12 11 17 17 C 1.52816 * 117.50071 * 94.82511 * 14 12 11 18 18 C 1.53181 * 117.71237 * 215.13058 * 17 14 12 19 19 C 1.53353 * 108.88680 * 201.03656 * 18 17 14 20 20 N 1.46885 * 108.79082 * 308.91113 * 19 18 17 21 21 C 1.34774 * 120.26344 * 236.73220 * 20 19 18 22 22 O 1.21605 * 120.00196 * 354.23197 * 21 20 19 23 23 C 1.47415 * 120.00002 * 174.22622 * 21 20 19 24 24 N 1.31608 * 125.86710 * 5.49288 * 23 21 20 25 25 C 1.33100 * 109.09911 * 179.97438 * 24 23 21 26 26 C 1.35556 * 108.34882 * 359.97438 * 25 24 23 27 27 N 1.35410 * 107.16192 * 359.77417 * 26 25 24 28 28 H 0.96993 * 126.44103 * 180.22169 * 27 26 25 29 29 C 1.46852 * 119.35465 * 56.67012 * 20 19 18 30 30 C 1.53184 * 117.71300 * 359.89035 * 17 14 12 31 31 H 0.96995 * 120.00344 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.46942 * 60.00174 * 9 7 2 33 33 H 1.09006 * 109.47039 * 300.00336 * 9 7 2 34 34 H 1.08998 * 109.47034 * 60.00099 * 10 9 7 35 35 H 1.09006 * 109.47188 * 300.00113 * 10 9 7 36 36 H 0.96999 * 120.00125 * 0.02562 * 11 10 9 37 37 H 1.08997 * 117.50623 * 145.05630 * 16 14 12 38 38 H 1.09003 * 117.50505 * 0.02562 * 16 14 12 39 39 H 1.08993 * 109.59134 * 320.89855 * 18 17 14 40 40 H 1.09002 * 109.58572 * 81.18306 * 18 17 14 41 41 H 1.09001 * 109.57614 * 68.56508 * 19 18 17 42 42 H 1.09007 * 109.57843 * 188.96453 * 19 18 17 43 43 H 1.07999 * 125.82177 * 179.97438 * 25 24 23 44 44 H 1.08002 * 126.42246 * 179.97438 * 26 25 24 45 45 H 1.08998 * 109.58140 * 183.38196 * 29 20 19 46 46 H 1.09001 * 109.58084 * 62.97472 * 29 20 19 47 47 H 1.09003 * 109.59193 * 278.66758 * 30 17 14 48 48 H 1.09000 * 109.59224 * 38.95459 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5130 -4.9308 0.0001 12 6 2.1868 -6.0979 0.0007 13 8 3.3997 -6.0979 0.0012 14 6 1.4334 -7.4032 0.0019 15 1 0.6610 -7.4993 0.7649 16 6 2.2060 -8.6661 -0.3847 17 6 1.1789 -8.0723 -1.3482 18 6 -0.1422 -8.8256 -1.5321 19 6 0.0131 -9.8262 -2.6838 20 7 0.5547 -9.1213 -3.8532 21 6 -0.1112 -9.1379 -5.0248 22 8 -1.1087 -9.8226 -5.1476 23 6 0.3695 -8.3260 -6.1574 24 7 1.4840 -7.6268 -6.1867 25 6 1.5891 -7.0242 -7.3688 26 6 0.5052 -7.3532 -8.1134 27 7 -0.2626 -8.1754 -7.3598 28 1 -1.1042 -8.5795 -7.6228 29 6 1.8270 -8.3980 -3.7322 30 6 1.7048 -7.3679 -2.6027 31 1 -0.4850 0.8400 0.0004 32 1 0.6242 -2.5567 -0.8903 33 1 0.6248 -2.5571 0.8897 34 1 2.8720 -3.6043 0.8894 35 1 2.8721 -3.6043 -0.8905 36 1 0.5430 -4.9308 0.0000 37 1 1.9419 -9.5933 0.1239 38 1 3.2598 -8.5534 -0.6396 39 1 -0.3891 -9.3597 -0.6147 40 1 -0.9368 -8.1176 -1.7678 41 1 0.6992 -10.6199 -2.3880 42 1 -0.9589 -10.2537 -2.9298 43 1 2.3997 -6.3826 -7.6814 44 1 0.2950 -7.0240 -9.1203 45 1 2.0476 -7.8876 -4.6697 46 1 2.6265 -9.1016 -3.5001 47 1 1.0102 -6.5817 -2.8987 48 1 2.6823 -6.9327 -2.3949 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271287835.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:54 Heat of formation + Delta-G solvation = 17.084059 kcal Electronic energy + Delta-G solvation = -30215.369828 eV Core-core repulsion = 26079.149436 eV Total energy + Delta-G solvation = -4136.220392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.68422 -40.53286 -39.46809 -37.82873 -35.61250 -34.74073 -33.19286 -32.80183 -31.74443 -30.46514 -29.78757 -29.37824 -25.44021 -24.98329 -23.74057 -23.23370 -22.69929 -21.91378 -20.91778 -20.84816 -19.73555 -19.09463 -17.99372 -17.04412 -16.78788 -16.30936 -16.07008 -16.05812 -15.23460 -15.06250 -14.95101 -14.56213 -14.46199 -14.38941 -14.30975 -14.04665 -13.87816 -13.63498 -13.23166 -13.07252 -12.76518 -12.41032 -12.32007 -12.01360 -11.91115 -11.38573 -11.18728 -11.10245 -11.04145 -10.71842 -10.64337 -10.62524 -10.40495 -10.30565 -10.02988 -9.74480 -9.52498 -9.42943 -9.16483 -9.08507 -8.75299 -8.52135 -8.32834 -6.08875 -4.11557 0.97928 2.14643 2.24474 2.86442 3.04800 3.08039 3.28513 3.35971 3.40928 3.58906 3.81090 3.84171 4.41583 4.42133 4.56008 4.58849 4.71441 4.80709 4.83978 4.93662 4.97922 5.13813 5.27655 5.28223 5.29295 5.40154 5.43172 5.45964 5.56326 5.71793 5.76105 5.78924 5.93228 5.98702 6.11207 6.19210 6.23579 6.36700 6.37444 6.54719 6.75609 6.81788 6.96470 7.01599 7.36870 7.53240 7.62925 7.77730 7.89631 8.06901 8.29037 8.70900 8.94831 9.53281 11.02760 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.009609 B = 0.002634 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.140979 B =10629.516960 C =12536.821879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.122 3.878 11 N -0.717 5.717 12 C 0.537 3.463 13 O -0.551 6.551 14 C -0.180 4.180 15 H 0.123 0.877 16 C -0.138 4.138 17 C -0.103 4.103 18 C -0.097 4.097 19 C 0.116 3.884 20 N -0.579 5.579 21 C 0.604 3.396 22 O -0.549 6.549 23 C 0.152 3.848 24 N -0.437 5.437 25 C -0.025 4.025 26 C -0.022 4.022 27 N -0.523 5.523 28 H 0.431 0.569 29 C 0.056 3.944 30 C -0.097 4.097 31 H 0.261 0.739 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.397 0.603 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.182 0.818 44 H 0.189 0.811 45 H 0.167 0.833 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.012 -21.746 -13.331 25.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.366 5.366 12 C 0.322 3.678 13 O -0.429 6.429 14 C -0.201 4.201 15 H 0.141 0.859 16 C -0.175 4.175 17 C -0.103 4.103 18 C -0.135 4.135 19 C -0.006 4.006 20 N -0.310 5.310 21 C 0.390 3.610 22 O -0.427 6.427 23 C -0.109 4.109 24 N -0.159 5.159 25 C -0.177 4.177 26 C -0.161 4.161 27 N -0.125 5.125 28 H 0.271 0.729 29 C -0.065 4.065 30 C -0.135 4.135 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.231 0.769 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.199 0.801 44 H 0.206 0.794 45 H 0.182 0.818 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.250 -21.932 -12.703 25.376 hybrid contribution -1.041 0.972 -0.541 1.523 sum -2.291 -20.960 -13.245 24.899 Atomic orbital electron populations 1.69968 1.06086 1.26730 1.50534 1.25001 0.94888 0.99414 0.95026 0.86464 0.80194 0.83363 0.77605 1.19557 1.20931 1.20955 1.21093 0.93272 0.90388 1.51118 0.92210 1.19319 0.94199 0.91159 0.97795 1.21712 0.96019 0.81570 1.00704 1.46270 1.10519 1.06385 1.73444 1.19533 0.87506 0.84500 0.76248 1.90664 1.13897 1.87677 1.50704 1.22414 1.04078 0.93148 1.00505 0.85925 1.23057 0.98337 0.95012 1.01124 1.21520 0.97186 1.01259 0.90368 1.21566 0.95571 0.97919 0.98420 1.21675 1.00692 0.94175 0.84045 1.47715 1.23312 1.50950 1.09033 1.16565 0.82724 0.80409 0.81292 1.90821 1.26380 1.42745 1.82741 1.22661 0.93349 1.05670 0.89195 1.69512 1.15490 1.09887 1.21011 1.22698 1.00117 1.04301 0.90580 1.23021 0.94537 0.98842 0.99676 1.42910 1.21224 1.36187 1.12155 0.72949 1.23294 0.83063 0.94988 1.05188 1.21531 1.02288 0.97421 0.92264 0.92929 0.95971 0.96012 0.92651 0.92597 0.76916 0.88248 0.87519 0.90075 0.90671 0.90754 0.88664 0.80060 0.79439 0.81787 0.91576 0.90996 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.17 16 10 C 0.12 2.63 5.61 -4.05 -0.02 2.60 16 11 N -0.72 -12.69 5.56 -60.29 -0.33 -13.03 16 12 C 0.54 9.11 6.20 -10.98 -0.07 9.04 16 13 O -0.55 -11.31 16.25 5.55 0.09 -11.22 16 14 C -0.18 -2.24 5.92 -91.85 -0.54 -2.78 16 15 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 16 C -0.14 -1.49 9.45 -26.80 -0.25 -1.74 16 17 C -0.10 -1.11 1.94 -154.50 -0.30 -1.41 16 18 C -0.10 -0.86 5.82 -26.45 -0.15 -1.02 16 19 C 0.12 1.06 6.43 -3.65 -0.02 1.04 16 20 N -0.58 -6.30 2.92 -173.93 -0.51 -6.81 16 21 C 0.60 7.26 7.67 -12.53 -0.10 7.16 16 22 O -0.55 -7.52 16.49 5.27 0.09 -7.44 16 23 C 0.15 1.64 7.74 -154.52 -1.20 0.44 16 24 N -0.44 -4.72 7.49 -11.26 -0.08 -4.81 16 25 C -0.03 -0.21 11.85 -17.96 -0.21 -0.42 16 26 C -0.02 -0.13 12.00 -16.93 -0.20 -0.34 16 27 N -0.52 -4.04 6.15 -10.78 -0.07 -4.11 16 28 H 0.43 2.42 8.96 -40.82 -0.37 2.05 16 29 C 0.06 0.62 6.34 -3.67 -0.02 0.59 16 30 C -0.10 -1.19 5.24 -26.45 -0.14 -1.33 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.40 6.24 8.47 -40.82 -0.35 5.90 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.11 1.32 7.77 -51.93 -0.40 0.92 16 39 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.90 6.99 -51.93 -0.36 0.54 16 43 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.19 0.42 8.06 -52.49 -0.42 -0.01 16 45 H 0.17 1.91 3.57 -84.91 -0.30 1.61 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.08 1.19 7.24 -51.93 -0.38 0.81 16 LS Contribution 395.58 15.07 5.96 5.96 Total: -1.00 -34.97 395.58 -10.12 -45.09 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.19 Total: 6.66 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -3.79 Total: -1.23 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.26 Total: -54.22 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.18 Total: -18.65 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.97 -10.12 -45.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271287835.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.174 kcal (2) G-P(sol) polarization free energy of solvation -34.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds