Wall clock time and date at job start Sat Apr 11 2020 07:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99859 * 2 1 4 4 H 1.48496 * 109.46971 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47460 * 300.00552 * 3 2 1 6 6 H 1.48506 * 109.46721 * 60.00476 * 3 2 1 7 7 C 1.37875 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99457 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00522 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47407 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47278 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00270 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99797 * 0.02562 * 12 11 10 14 14 C 1.50708 * 120.00421 * 179.97438 * 12 11 10 15 15 H 1.08997 * 115.54651 * 309.14532 * 14 12 11 16 16 C 1.53023 * 117.52693 * 163.41823 * 14 12 11 17 17 C 1.52816 * 117.50071 * 94.82511 * 14 12 11 18 18 C 1.53181 * 117.71237 * 215.13058 * 17 14 12 19 19 C 1.53353 * 108.88680 * 201.03656 * 18 17 14 20 20 N 1.46885 * 108.79082 * 308.91113 * 19 18 17 21 21 C 1.34774 * 120.26344 * 236.73220 * 20 19 18 22 22 O 1.21605 * 120.00196 * 354.23197 * 21 20 19 23 23 C 1.47415 * 120.00002 * 174.22622 * 21 20 19 24 24 N 1.31608 * 125.86710 * 5.49288 * 23 21 20 25 25 C 1.33100 * 109.09911 * 179.97438 * 24 23 21 26 26 C 1.35556 * 108.34882 * 359.97438 * 25 24 23 27 27 N 1.35410 * 107.16192 * 359.77417 * 26 25 24 28 28 H 0.96993 * 126.44103 * 180.22169 * 27 26 25 29 29 C 1.46852 * 119.35465 * 56.67012 * 20 19 18 30 30 C 1.53184 * 117.71300 * 359.89035 * 17 14 12 31 31 H 0.96995 * 120.00344 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.46942 * 60.00174 * 9 7 2 33 33 H 1.09006 * 109.47039 * 300.00336 * 9 7 2 34 34 H 1.08998 * 109.47034 * 60.00099 * 10 9 7 35 35 H 1.09006 * 109.47188 * 300.00113 * 10 9 7 36 36 H 0.96999 * 120.00125 * 0.02562 * 11 10 9 37 37 H 1.08997 * 117.50623 * 145.05630 * 16 14 12 38 38 H 1.09003 * 117.50505 * 0.02562 * 16 14 12 39 39 H 1.08993 * 109.59134 * 320.89855 * 18 17 14 40 40 H 1.09002 * 109.58572 * 81.18306 * 18 17 14 41 41 H 1.09001 * 109.57614 * 68.56508 * 19 18 17 42 42 H 1.09007 * 109.57843 * 188.96453 * 19 18 17 43 43 H 1.07999 * 125.82177 * 179.97438 * 25 24 23 44 44 H 1.08002 * 126.42246 * 179.97438 * 26 25 24 45 45 H 1.08998 * 109.58140 * 183.38196 * 29 20 19 46 46 H 1.09001 * 109.58084 * 62.97472 * 29 20 19 47 47 H 1.09003 * 109.59193 * 278.66758 * 30 17 14 48 48 H 1.09000 * 109.59224 * 38.95459 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5130 -4.9308 0.0001 12 6 2.1868 -6.0979 0.0007 13 8 3.3997 -6.0979 0.0012 14 6 1.4334 -7.4032 0.0019 15 1 0.6610 -7.4993 0.7649 16 6 2.2060 -8.6661 -0.3847 17 6 1.1789 -8.0723 -1.3482 18 6 -0.1422 -8.8256 -1.5321 19 6 0.0131 -9.8262 -2.6838 20 7 0.5547 -9.1213 -3.8532 21 6 -0.1112 -9.1379 -5.0248 22 8 -1.1087 -9.8226 -5.1476 23 6 0.3695 -8.3260 -6.1574 24 7 1.4840 -7.6268 -6.1867 25 6 1.5891 -7.0242 -7.3688 26 6 0.5052 -7.3532 -8.1134 27 7 -0.2626 -8.1754 -7.3598 28 1 -1.1042 -8.5795 -7.6228 29 6 1.8270 -8.3980 -3.7322 30 6 1.7048 -7.3679 -2.6027 31 1 -0.4850 0.8400 0.0004 32 1 0.6242 -2.5567 -0.8903 33 1 0.6248 -2.5571 0.8897 34 1 2.8720 -3.6043 0.8894 35 1 2.8721 -3.6043 -0.8905 36 1 0.5430 -4.9308 0.0000 37 1 1.9419 -9.5933 0.1239 38 1 3.2598 -8.5534 -0.6396 39 1 -0.3891 -9.3597 -0.6147 40 1 -0.9368 -8.1176 -1.7678 41 1 0.6992 -10.6199 -2.3880 42 1 -0.9589 -10.2537 -2.9298 43 1 2.3997 -6.3826 -7.6814 44 1 0.2950 -7.0240 -9.1203 45 1 2.0476 -7.8876 -4.6697 46 1 2.6265 -9.1016 -3.5001 47 1 1.0102 -6.5817 -2.8987 48 1 2.6823 -6.9327 -2.3949 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271287835.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:53 Heat of formation + Delta-G solvation = -6.267301 kcal Electronic energy + Delta-G solvation = -30216.382419 eV Core-core repulsion = 26079.149436 eV Total energy + Delta-G solvation = -4137.232983 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.33696 -41.54677 -40.55995 -38.95340 -36.74595 -36.30257 -34.80267 -33.87110 -32.52052 -31.69400 -31.22758 -30.22899 -27.20867 -25.81141 -24.81136 -24.51438 -23.46265 -22.71661 -22.52585 -21.66147 -21.01996 -19.92690 -18.87418 -18.56656 -18.00867 -17.71908 -16.87523 -16.82840 -16.65497 -16.52416 -16.41587 -15.76256 -15.60219 -15.20356 -15.12315 -15.01015 -14.86540 -14.59106 -14.44715 -14.29971 -14.03809 -14.00053 -13.30987 -13.23098 -12.97140 -12.93509 -12.78024 -12.52912 -12.27351 -12.21715 -11.97312 -11.71957 -11.51602 -11.47723 -11.39739 -11.24465 -10.98496 -10.70450 -10.62199 -10.32034 -10.01267 -9.84399 -9.48604 -8.25282 -6.36021 0.26187 1.40271 1.41062 1.46344 1.54534 1.55551 1.61218 2.23377 2.27227 2.39879 2.44207 2.76995 3.09317 3.10551 3.59748 3.64138 3.76781 3.86549 3.94782 4.09193 4.13118 4.32875 4.34220 4.43347 4.46373 4.47680 4.50844 4.56883 4.60768 4.74611 4.80298 4.82961 4.91233 4.94970 4.99377 5.08520 5.17921 5.23248 5.28125 5.30519 5.43248 5.49274 5.55814 5.77400 5.87382 6.14175 6.14855 6.21797 6.64421 6.66459 6.77299 6.97600 7.30037 7.33487 8.86802 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.009609 B = 0.002634 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.140979 B =10629.516960 C =12536.821879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.142 3.858 11 N -0.715 5.715 12 C 0.535 3.465 13 O -0.589 6.589 14 C -0.189 4.189 15 H 0.152 0.848 16 C -0.124 4.124 17 C -0.094 4.094 18 C -0.088 4.088 19 C 0.113 3.887 20 N -0.580 5.580 21 C 0.600 3.400 22 O -0.574 6.574 23 C 0.114 3.886 24 N -0.456 5.456 25 C -0.054 4.054 26 C 0.008 3.992 27 N -0.516 5.516 28 H 0.440 0.560 29 C 0.063 3.937 30 C -0.092 4.092 31 H 0.266 0.734 32 H 0.006 0.994 33 H 0.008 0.992 34 H 0.045 0.955 35 H 0.043 0.957 36 H 0.408 0.592 37 H 0.135 0.865 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.200 0.800 44 H 0.233 0.767 45 H 0.161 0.839 46 H 0.074 0.926 47 H 0.051 0.949 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.300 -22.565 -13.943 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.018 3.982 11 N -0.365 5.365 12 C 0.324 3.676 13 O -0.470 6.470 14 C -0.210 4.210 15 H 0.169 0.831 16 C -0.161 4.161 17 C -0.094 4.094 18 C -0.126 4.126 19 C -0.009 4.009 20 N -0.310 5.310 21 C 0.387 3.613 22 O -0.454 6.454 23 C -0.146 4.146 24 N -0.179 5.179 25 C -0.205 4.205 26 C -0.132 4.132 27 N -0.119 5.119 28 H 0.281 0.719 29 C -0.059 4.059 30 C -0.131 4.131 31 H 0.075 0.925 32 H 0.024 0.976 33 H 0.026 0.974 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.244 0.756 37 H 0.153 0.847 38 H 0.106 0.894 39 H 0.130 0.870 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.217 0.783 44 H 0.250 0.750 45 H 0.177 0.823 46 H 0.092 0.908 47 H 0.070 0.930 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.563 -22.783 -13.297 26.425 hybrid contribution -0.922 1.261 -0.455 1.627 sum -2.485 -21.521 -13.751 25.660 Atomic orbital electron populations 1.70069 1.07561 1.27952 1.51040 1.25886 0.95806 1.03142 0.94363 0.85384 0.78970 0.78679 0.77952 1.18935 1.20111 1.20174 1.21487 0.93547 0.91918 1.51497 0.92365 1.19113 0.94167 0.91853 0.96165 1.21194 0.94994 0.82407 0.99585 1.46126 1.10964 1.05592 1.73787 1.20315 0.87266 0.85525 0.74539 1.90641 1.15854 1.88317 1.52234 1.22421 1.05072 0.90969 1.02502 0.83094 1.23165 0.97229 0.95370 1.00354 1.21541 0.98399 1.00698 0.88798 1.21566 0.93740 0.97601 0.99678 1.21836 1.01060 0.94536 0.83431 1.47796 1.23073 1.50730 1.09424 1.16785 0.82438 0.80259 0.81867 1.90788 1.27383 1.43955 1.83303 1.22483 0.94460 1.07411 0.90202 1.69394 1.15830 1.10227 1.22476 1.23208 1.01794 1.05192 0.90326 1.23745 0.92732 0.96143 1.00543 1.42999 1.21511 1.35962 1.11416 0.71873 1.23181 0.83462 0.94791 1.04430 1.21406 1.00355 0.97462 0.93861 0.92534 0.97584 0.97410 0.93665 0.93811 0.75647 0.84651 0.89381 0.87007 0.91605 0.88890 0.88860 0.78322 0.75031 0.82295 0.90773 0.92988 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.79 13.29 21.45 0.28 -54.51 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.55 -30.98 9.11 25.60 0.23 -30.75 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.26 5.09 29.85 0.15 1.41 16 10 C 0.14 6.31 5.61 86.38 0.48 6.79 16 11 N -0.71 -25.81 5.56 -463.06 -2.57 -28.38 16 12 C 0.54 18.31 6.20 87.66 0.54 18.85 16 13 O -0.59 -24.76 16.25 -3.04 -0.05 -24.81 16 14 C -0.19 -4.40 5.92 -11.59 -0.07 -4.46 16 15 H 0.15 2.70 8.14 -2.39 -0.02 2.69 16 16 C -0.12 -2.41 9.45 30.55 0.29 -2.12 16 17 C -0.09 -1.90 1.94 -52.17 -0.10 -2.00 16 18 C -0.09 -1.37 5.82 30.77 0.18 -1.19 16 19 C 0.11 1.88 6.43 86.42 0.56 2.44 16 20 N -0.58 -12.45 2.92 -822.46 -2.40 -14.86 16 21 C 0.60 14.52 7.67 86.66 0.67 15.18 16 22 O -0.57 -15.82 16.49 -4.05 -0.07 -15.88 16 23 C 0.11 2.46 7.74 136.28 1.06 3.51 16 24 N -0.46 -9.96 7.49 -189.53 -1.42 -11.38 16 25 C -0.05 -0.83 11.85 83.88 0.99 0.16 16 26 C 0.01 0.08 12.00 83.52 1.00 1.09 16 27 N -0.52 -7.43 6.15 -188.01 -1.16 -8.58 16 28 H 0.44 4.46 8.96 -92.71 -0.83 3.63 16 29 C 0.06 1.41 6.34 86.43 0.55 1.95 16 30 C -0.09 -2.33 5.24 30.77 0.16 -2.17 16 31 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 34 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.41 12.97 8.47 -92.71 -0.79 12.18 16 37 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 2.11 7.77 -2.39 -0.02 2.09 16 39 H 0.11 1.11 8.10 -2.39 -0.02 1.10 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.09 1.65 6.99 -2.38 -0.02 1.63 16 43 H 0.20 2.10 8.06 -2.91 -0.02 2.08 16 44 H 0.23 0.08 8.06 -2.91 -0.02 0.05 16 45 H 0.16 3.86 3.57 -67.50 -0.24 3.61 16 46 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.06 1.76 7.24 -2.39 -0.02 1.74 16 Total: -1.00 -78.05 395.58 0.95 -77.10 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: -0.84 Total: 25.81 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 7.15 Total: 9.54 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -7.27 Total: -117.71 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.12 Total: -40.70 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -78.05 0.95 -77.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271287835.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.831 kcal (2) G-P(sol) polarization free energy of solvation -78.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds