Wall clock time and date at job start Sat Apr 11 2020 07:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99709 * 2 1 4 4 H 1.48503 * 109.46936 * 270.00071 * 3 2 1 5 5 H 1.48503 * 109.47132 * 29.99833 * 3 2 1 6 6 H 1.48498 * 109.47150 * 149.99807 * 3 2 1 7 7 C 1.37871 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00093 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99701 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46955 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47267 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99925 * 179.97438 * 11 10 9 13 13 O 1.21271 * 119.99960 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99326 * 180.02562 * 12 11 10 15 15 H 1.08993 * 115.56940 * 60.75180 * 14 12 11 16 16 C 1.53034 * 117.49545 * 206.45046 * 14 12 11 17 17 C 1.52814 * 117.50210 * 275.03239 * 14 12 11 18 18 C 1.53182 * 117.71390 * 0.15213 * 17 14 12 19 19 C 1.53356 * 108.76839 * 201.11106 * 18 17 14 20 20 N 1.46837 * 108.81456 * 308.68909 * 19 18 17 21 21 C 1.34771 * 120.38625 * 236.61999 * 20 19 18 22 22 O 1.21613 * 119.99841 * 356.50705 * 21 20 19 23 23 C 1.47423 * 120.00743 * 176.50582 * 21 20 19 24 24 C 1.41297 * 126.41278 * 43.44442 * 23 21 20 25 25 N 1.30446 * 108.02280 * 179.85401 * 24 23 21 26 26 N 1.39939 * 108.89846 * 0.41203 * 25 24 23 27 27 H 0.96992 * 125.75649 * 179.72714 * 26 25 24 28 28 C 1.34262 * 108.48956 * 359.73348 * 26 25 24 29 29 C 1.46842 * 119.23745 * 56.89674 * 20 19 18 30 30 C 1.53185 * 117.71203 * 144.90810 * 17 14 12 31 31 H 0.96989 * 119.99991 * 0.02562 * 1 2 3 32 32 H 1.08993 * 109.47484 * 59.99917 * 9 7 2 33 33 H 1.09000 * 109.47220 * 299.99391 * 9 7 2 34 34 H 1.09006 * 109.47010 * 59.99585 * 10 9 7 35 35 H 1.09005 * 109.47232 * 299.99632 * 10 9 7 36 36 H 0.96997 * 119.99875 * 0.02562 * 11 10 9 37 37 H 1.08996 * 117.50618 * 0.02562 * 16 14 12 38 38 H 1.09001 * 117.50354 * 214.95783 * 16 14 12 39 39 H 1.09002 * 109.58996 * 81.32818 * 18 17 14 40 40 H 1.08998 * 109.58994 * 320.89826 * 18 17 14 41 41 H 1.08996 * 109.58192 * 188.89037 * 19 18 17 42 42 H 1.09001 * 109.57691 * 68.49149 * 19 18 17 43 43 H 1.08003 * 125.98874 * 0.02562 * 24 23 21 44 44 H 1.07997 * 126.28989 * 180.02562 * 28 26 25 45 45 H 1.09004 * 109.57989 * 62.89955 * 29 20 19 46 46 H 1.09002 * 109.58689 * 183.30238 * 29 20 19 47 47 H 1.09000 * 109.58751 * 278.67265 * 30 17 14 48 48 H 1.09004 * 109.58760 * 39.09969 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9308 0.0012 12 6 2.1871 -6.0980 0.0007 13 8 3.3998 -6.0979 0.0003 14 6 1.4335 -7.4030 0.0008 15 1 0.7820 -7.5701 -0.8569 16 6 2.1329 -8.6227 0.6050 17 6 0.9781 -7.9549 1.3511 18 6 1.3168 -7.1414 2.6040 19 6 1.2644 -8.0692 3.8239 20 7 -0.0159 -8.7881 3.8174 21 6 -0.8456 -8.7125 4.8767 22 8 -0.5082 -8.0984 5.8707 23 6 -2.1622 -9.3742 4.8308 24 6 -2.4331 -10.6694 4.3351 25 7 -3.7111 -10.8937 4.4694 26 7 -4.3118 -9.7659 5.0400 27 1 -5.2550 -9.6680 5.2435 28 6 -3.3621 -8.8423 5.2584 29 6 -0.3792 -9.5954 2.6458 30 6 -0.3601 -8.6986 1.4020 31 1 -0.4849 0.8399 -0.0004 32 1 0.6248 -2.5571 -0.8896 33 1 0.6242 -2.5567 0.8903 34 1 2.8722 -3.6042 0.8905 35 1 2.8721 -3.6043 -0.8895 36 1 0.5431 -4.9308 0.0011 37 1 3.1378 -8.4810 1.0028 38 1 1.9414 -9.5921 0.1449 39 1 0.5909 -6.3373 2.7250 40 1 2.3179 -6.7211 2.5073 41 1 1.3469 -7.4784 4.7361 42 1 2.0853 -8.7845 3.7743 43 1 -1.7086 -11.3547 3.9206 44 1 -3.5098 -7.8632 5.6896 45 1 0.3398 -10.4054 2.5231 46 1 -1.3784 -10.0089 2.7826 47 1 -1.1764 -7.9785 1.4582 48 1 -0.4718 -9.3116 0.5076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271300058.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:56 Heat of formation + Delta-G solvation = 23.199883 kcal Electronic energy + Delta-G solvation = -30010.269303 eV Core-core repulsion = 25874.314113 eV Total energy + Delta-G solvation = -4135.955190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.86337 -40.50324 -39.35999 -37.79879 -35.49082 -34.77939 -32.82030 -32.59069 -31.54656 -30.75833 -29.90432 -29.49096 -25.42138 -24.73473 -24.09999 -23.30727 -22.55356 -22.09489 -20.90951 -20.30753 -19.69558 -19.10513 -18.11313 -16.99285 -16.65492 -16.33491 -16.07412 -15.61380 -15.27769 -15.16733 -15.11838 -14.80362 -14.58945 -14.38289 -14.09116 -13.93806 -13.71753 -13.54880 -13.11636 -12.93909 -12.72217 -12.42370 -12.32919 -12.12345 -11.78404 -11.56173 -11.44584 -11.21548 -11.04438 -10.96698 -10.65954 -10.36837 -10.32400 -10.22184 -10.11810 -10.03587 -9.75194 -9.45687 -9.21901 -9.18536 -8.76372 -8.54441 -8.35617 -6.10174 -4.12985 1.21854 1.79847 2.26174 2.66437 2.84300 3.02455 3.28948 3.35022 3.38804 3.49385 3.73506 4.13035 4.36484 4.40233 4.42208 4.48982 4.57510 4.67471 4.74153 4.83393 4.90062 5.00974 5.13630 5.17448 5.26978 5.29010 5.29814 5.41896 5.43972 5.58954 5.65404 5.66741 5.82912 5.87414 5.93651 6.04494 6.10074 6.33722 6.33825 6.35201 6.62999 6.72829 6.92420 7.01810 7.19137 7.50922 7.60729 7.88087 8.00728 8.02852 8.27131 8.66415 8.93088 9.51973 11.01429 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.011697 B = 0.002316 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.121774 B =12085.082703 C =13469.562059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.717 5.717 12 C 0.536 3.464 13 O -0.550 6.550 14 C -0.178 4.178 15 H 0.125 0.875 16 C -0.138 4.138 17 C -0.103 4.103 18 C -0.102 4.102 19 C 0.119 3.881 20 N -0.602 5.602 21 C 0.595 3.405 22 O -0.542 6.542 23 C -0.287 4.287 24 C 0.079 3.921 25 N -0.294 5.294 26 N -0.463 5.463 27 H 0.445 0.555 28 C 0.125 3.875 29 C 0.101 3.899 30 C -0.097 4.097 31 H 0.262 0.738 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.398 0.602 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.193 0.807 44 H 0.190 0.810 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.075 0.925 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.535 -24.949 6.854 27.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.001 4.001 11 N -0.366 5.366 12 C 0.321 3.679 13 O -0.429 6.429 14 C -0.199 4.199 15 H 0.143 0.857 16 C -0.175 4.175 17 C -0.104 4.104 18 C -0.140 4.140 19 C -0.003 4.003 20 N -0.335 5.335 21 C 0.383 3.617 22 O -0.419 6.419 23 C -0.302 4.302 24 C -0.109 4.109 25 N -0.115 5.115 26 N -0.169 5.169 27 H 0.290 0.710 28 C -0.027 4.027 29 C -0.022 4.022 30 C -0.135 4.135 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.231 0.769 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.210 0.790 44 H 0.207 0.793 45 H 0.091 0.909 46 H 0.114 0.886 47 H 0.094 0.906 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.549 -25.313 7.208 27.673 hybrid contribution 0.052 1.703 -0.100 1.707 sum -8.497 -23.610 7.108 26.080 Atomic orbital electron populations 1.69953 1.06087 1.26868 1.50417 1.24994 0.94890 0.99407 0.94983 0.86518 0.79869 0.83018 0.78196 1.20562 1.21156 1.19710 1.21052 0.93241 0.90402 1.51307 0.92264 1.19312 0.94173 0.91121 0.97792 1.21726 0.96048 0.81581 1.00720 1.46291 1.10528 1.06374 1.73358 1.19554 0.87499 0.84522 0.76337 1.90670 1.13933 1.87675 1.50620 1.22409 1.04608 0.94228 0.98642 0.85680 1.23065 0.97576 0.95206 1.01689 1.21474 0.95924 1.01317 0.91662 1.21590 1.03134 0.97312 0.91927 1.21575 0.84118 0.95146 0.99479 1.47838 1.19857 1.49175 1.16642 1.17330 0.82790 0.79248 0.82343 1.90801 1.75765 1.43739 1.31629 1.20253 0.94666 0.98066 1.17199 1.24118 0.93499 0.95571 0.97673 1.77169 1.08956 1.06568 1.18812 1.46204 1.10658 1.11330 1.48690 0.70990 1.22999 0.87916 0.95770 0.95985 1.22034 1.02083 0.93461 0.84581 1.21563 0.95486 0.98553 0.97910 0.92854 0.96025 0.95949 0.92601 0.92628 0.76894 0.87697 0.88117 0.90502 0.89982 0.88540 0.91135 0.79019 0.79318 0.90856 0.88612 0.90632 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.12 2.57 5.61 -4.04 -0.02 2.54 16 11 N -0.72 -12.26 5.56 -60.29 -0.33 -12.59 16 12 C 0.54 8.76 6.10 -10.98 -0.07 8.69 16 13 O -0.55 -11.13 16.59 5.57 0.09 -11.04 16 14 C -0.18 -2.04 5.91 -91.85 -0.54 -2.58 16 15 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 16 C -0.14 -1.34 9.45 -26.79 -0.25 -1.59 16 17 C -0.10 -0.98 1.94 -154.49 -0.30 -1.28 16 18 C -0.10 -1.14 5.23 -26.45 -0.14 -1.28 16 19 C 0.12 1.22 6.43 -3.67 -0.02 1.20 16 20 N -0.60 -5.64 2.92 -173.98 -0.51 -6.14 16 21 C 0.59 6.65 7.58 -12.52 -0.09 6.55 16 22 O -0.54 -8.14 16.49 5.27 0.09 -8.05 16 23 C -0.29 -2.50 5.34 -105.07 -0.56 -3.06 16 24 C 0.08 0.57 9.57 -16.98 -0.16 0.41 16 25 N -0.29 -2.34 12.63 30.86 0.39 -1.95 16 26 N -0.46 -2.69 7.29 30.85 0.22 -2.47 16 27 H 0.45 1.12 8.96 -182.73 -1.64 -0.52 16 28 C 0.13 0.86 12.02 -16.56 -0.20 0.66 16 29 C 0.10 0.65 5.81 -3.67 -0.02 0.63 16 30 C -0.10 -0.69 5.83 -26.45 -0.15 -0.84 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.40 6.01 8.47 -40.82 -0.35 5.66 16 37 H 0.10 1.20 7.91 -51.93 -0.41 0.78 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.08 7.36 -51.93 -0.38 0.70 16 41 H 0.10 1.15 6.97 -51.93 -0.36 0.79 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.19 0.87 7.09 -52.48 -0.37 0.49 16 44 H 0.19 0.90 8.06 -52.49 -0.42 0.47 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.52 3.94 -51.93 -0.20 0.32 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -36.30 396.43 -9.78 -46.08 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.33 Total: 2.13 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -3.09 Total: -2.97 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.51 Total: -48.52 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.18 Total: -19.09 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.30 -9.78 -46.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271300058.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.282 kcal (2) G-P(sol) polarization free energy of solvation -36.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds