Wall clock time and date at job start Sat Apr 11 2020 07:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99709 * 2 1 4 4 H 1.48503 * 109.46936 * 270.00071 * 3 2 1 5 5 H 1.48503 * 109.47132 * 29.99833 * 3 2 1 6 6 H 1.48498 * 109.47150 * 149.99807 * 3 2 1 7 7 C 1.37871 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00093 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99701 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46955 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47267 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99925 * 179.97438 * 11 10 9 13 13 O 1.21271 * 119.99960 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99326 * 180.02562 * 12 11 10 15 15 H 1.08993 * 115.56940 * 60.75180 * 14 12 11 16 16 C 1.53034 * 117.49545 * 206.45046 * 14 12 11 17 17 C 1.52814 * 117.50210 * 275.03239 * 14 12 11 18 18 C 1.53182 * 117.71390 * 0.15213 * 17 14 12 19 19 C 1.53356 * 108.76839 * 201.11106 * 18 17 14 20 20 N 1.46837 * 108.81456 * 308.68909 * 19 18 17 21 21 C 1.34771 * 120.38625 * 236.61999 * 20 19 18 22 22 O 1.21613 * 119.99841 * 356.50705 * 21 20 19 23 23 C 1.47423 * 120.00743 * 176.50582 * 21 20 19 24 24 C 1.41297 * 126.41278 * 43.44442 * 23 21 20 25 25 N 1.30446 * 108.02280 * 179.85401 * 24 23 21 26 26 N 1.39939 * 108.89846 * 0.41203 * 25 24 23 27 27 H 0.96992 * 125.75649 * 179.72714 * 26 25 24 28 28 C 1.34262 * 108.48956 * 359.73348 * 26 25 24 29 29 C 1.46842 * 119.23745 * 56.89674 * 20 19 18 30 30 C 1.53185 * 117.71203 * 144.90810 * 17 14 12 31 31 H 0.96989 * 119.99991 * 0.02562 * 1 2 3 32 32 H 1.08993 * 109.47484 * 59.99917 * 9 7 2 33 33 H 1.09000 * 109.47220 * 299.99391 * 9 7 2 34 34 H 1.09006 * 109.47010 * 59.99585 * 10 9 7 35 35 H 1.09005 * 109.47232 * 299.99632 * 10 9 7 36 36 H 0.96997 * 119.99875 * 0.02562 * 11 10 9 37 37 H 1.08996 * 117.50618 * 0.02562 * 16 14 12 38 38 H 1.09001 * 117.50354 * 214.95783 * 16 14 12 39 39 H 1.09002 * 109.58996 * 81.32818 * 18 17 14 40 40 H 1.08998 * 109.58994 * 320.89826 * 18 17 14 41 41 H 1.08996 * 109.58192 * 188.89037 * 19 18 17 42 42 H 1.09001 * 109.57691 * 68.49149 * 19 18 17 43 43 H 1.08003 * 125.98874 * 0.02562 * 24 23 21 44 44 H 1.07997 * 126.28989 * 180.02562 * 28 26 25 45 45 H 1.09004 * 109.57989 * 62.89955 * 29 20 19 46 46 H 1.09002 * 109.58689 * 183.30238 * 29 20 19 47 47 H 1.09000 * 109.58751 * 278.67265 * 30 17 14 48 48 H 1.09004 * 109.58760 * 39.09969 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9308 0.0012 12 6 2.1871 -6.0980 0.0007 13 8 3.3998 -6.0979 0.0003 14 6 1.4335 -7.4030 0.0008 15 1 0.7820 -7.5701 -0.8569 16 6 2.1329 -8.6227 0.6050 17 6 0.9781 -7.9549 1.3511 18 6 1.3168 -7.1414 2.6040 19 6 1.2644 -8.0692 3.8239 20 7 -0.0159 -8.7881 3.8174 21 6 -0.8456 -8.7125 4.8767 22 8 -0.5082 -8.0984 5.8707 23 6 -2.1622 -9.3742 4.8308 24 6 -2.4331 -10.6694 4.3351 25 7 -3.7111 -10.8937 4.4694 26 7 -4.3118 -9.7659 5.0400 27 1 -5.2550 -9.6680 5.2435 28 6 -3.3621 -8.8423 5.2584 29 6 -0.3792 -9.5954 2.6458 30 6 -0.3601 -8.6986 1.4020 31 1 -0.4849 0.8399 -0.0004 32 1 0.6248 -2.5571 -0.8896 33 1 0.6242 -2.5567 0.8903 34 1 2.8722 -3.6042 0.8905 35 1 2.8721 -3.6043 -0.8895 36 1 0.5431 -4.9308 0.0011 37 1 3.1378 -8.4810 1.0028 38 1 1.9414 -9.5921 0.1449 39 1 0.5909 -6.3373 2.7250 40 1 2.3179 -6.7211 2.5073 41 1 1.3469 -7.4784 4.7361 42 1 2.0853 -8.7845 3.7743 43 1 -1.7086 -11.3547 3.9206 44 1 -3.5098 -7.8632 5.6896 45 1 0.3398 -10.4054 2.5231 46 1 -1.3784 -10.0089 2.7826 47 1 -1.1764 -7.9785 1.4582 48 1 -0.4718 -9.3116 0.5076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271300058.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:53:55 Heat of formation + Delta-G solvation = -2.745484 kcal Electronic energy + Delta-G solvation = -30011.394379 eV Core-core repulsion = 25874.314113 eV Total energy + Delta-G solvation = -4137.080266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.43803 -41.45426 -40.38690 -38.85817 -36.67634 -36.20267 -34.80753 -33.22098 -32.18415 -31.72467 -31.27817 -30.43999 -27.19609 -25.50497 -24.88559 -24.59423 -23.20179 -22.76309 -22.65331 -21.19231 -20.76097 -19.80160 -18.86777 -18.57229 -17.98169 -17.42576 -16.82833 -16.67434 -16.55741 -16.41939 -16.29128 -15.67601 -15.65748 -15.40942 -15.15690 -14.81901 -14.71667 -14.46322 -14.31294 -14.18923 -13.95394 -13.61890 -13.25439 -13.16309 -12.96050 -12.95111 -12.63560 -12.53262 -12.26834 -12.21193 -12.11527 -11.78680 -11.65513 -11.48731 -11.14183 -11.02056 -10.93192 -10.73824 -10.62481 -10.60784 -10.01643 -9.86051 -9.50703 -8.26272 -6.36895 0.65633 1.20498 1.39856 1.40460 1.51922 1.59682 1.77887 1.96722 2.23158 2.30257 2.43303 2.75501 3.08363 3.50882 3.59204 3.71401 3.81385 3.87940 3.92895 4.03350 4.13397 4.14455 4.32850 4.38703 4.45302 4.49244 4.51997 4.56282 4.61955 4.71621 4.78048 4.82064 4.83375 4.93561 4.99514 5.01659 5.12978 5.24393 5.28948 5.34871 5.36745 5.48388 5.55293 5.59824 5.76609 6.14050 6.23908 6.43875 6.54339 6.64587 6.76274 7.20399 7.30231 7.32563 8.85594 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.011697 B = 0.002316 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.121774 B =12085.082703 C =13469.562059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.141 3.859 11 N -0.714 5.714 12 C 0.534 3.466 13 O -0.593 6.593 14 C -0.189 4.189 15 H 0.155 0.845 16 C -0.124 4.124 17 C -0.090 4.090 18 C -0.098 4.098 19 C 0.124 3.876 20 N -0.599 5.599 21 C 0.592 3.408 22 O -0.593 6.593 23 C -0.312 4.312 24 C 0.087 3.913 25 N -0.315 5.315 26 N -0.451 5.451 27 H 0.459 0.541 28 C 0.131 3.869 29 C 0.099 3.901 30 C -0.091 4.091 31 H 0.266 0.734 32 H 0.008 0.992 33 H 0.006 0.994 34 H 0.042 0.958 35 H 0.045 0.955 36 H 0.409 0.591 37 H 0.084 0.916 38 H 0.140 0.860 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.218 0.782 44 H 0.205 0.795 45 H 0.099 0.901 46 H 0.111 0.889 47 H 0.067 0.933 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.530 -27.099 5.933 29.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.012 4.012 10 C 0.017 3.983 11 N -0.364 5.364 12 C 0.322 3.678 13 O -0.474 6.474 14 C -0.209 4.209 15 H 0.172 0.828 16 C -0.161 4.161 17 C -0.091 4.091 18 C -0.137 4.137 19 C 0.001 3.999 20 N -0.330 5.330 21 C 0.381 3.619 22 O -0.475 6.475 23 C -0.327 4.327 24 C -0.100 4.100 25 N -0.137 5.137 26 N -0.158 5.158 27 H 0.307 0.693 28 C -0.022 4.022 29 C -0.023 4.023 30 C -0.129 4.129 31 H 0.075 0.925 32 H 0.027 0.973 33 H 0.024 0.976 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.244 0.756 37 H 0.102 0.898 38 H 0.158 0.842 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.235 0.765 44 H 0.222 0.778 45 H 0.117 0.883 46 H 0.129 0.871 47 H 0.086 0.914 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.594 -27.509 6.253 29.797 hybrid contribution 0.350 2.379 0.215 2.415 sum -9.243 -25.130 6.468 27.546 Atomic orbital electron populations 1.70054 1.07516 1.28021 1.50961 1.25869 0.95809 1.03083 0.94368 0.85457 0.78613 0.78468 0.78598 1.19608 1.20439 1.19165 1.21467 0.93543 0.91994 1.51611 0.92418 1.19103 0.94146 0.91772 0.96197 1.21192 0.95017 0.82554 0.99521 1.46140 1.10963 1.05548 1.73709 1.20423 0.87246 0.85652 0.74464 1.90646 1.16067 1.88375 1.52296 1.22417 1.05727 0.91880 1.00918 0.82774 1.23190 0.96439 0.95882 1.00577 1.21501 0.97631 1.00579 0.89360 1.21470 1.00959 0.97375 0.93869 1.21417 0.85449 0.95220 0.97778 1.47921 1.19024 1.48783 1.17256 1.17726 0.83582 0.78627 0.81924 1.90770 1.76878 1.46192 1.33625 1.20178 0.93892 0.99161 1.19451 1.24468 0.93624 0.95080 0.96835 1.77142 1.09379 1.07472 1.19670 1.46225 1.11276 1.10527 1.47757 0.69345 1.23288 0.87726 0.96366 0.94839 1.22318 1.03758 0.93418 0.82769 1.21613 0.93104 0.98575 0.99597 0.92507 0.97325 0.97563 0.93969 0.93665 0.75602 0.89754 0.84233 0.92543 0.92608 0.90990 0.89487 0.76533 0.77808 0.88265 0.87090 0.91434 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.67 13.29 21.45 0.28 -54.38 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.55 -31.04 9.11 25.60 0.23 -30.81 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 9 C 0.03 1.29 5.09 29.85 0.15 1.44 16 10 C 0.14 6.20 5.61 86.38 0.48 6.68 16 11 N -0.71 -25.00 5.56 -463.05 -2.57 -27.57 16 12 C 0.53 17.56 6.10 87.66 0.53 18.09 16 13 O -0.59 -24.53 16.59 -3.00 -0.05 -24.58 16 14 C -0.19 -3.95 5.91 -11.59 -0.07 -4.02 16 15 H 0.15 2.40 8.14 -2.39 -0.02 2.38 16 16 C -0.12 -2.05 9.45 30.55 0.29 -1.76 16 17 C -0.09 -1.53 1.94 -52.17 -0.10 -1.63 16 18 C -0.10 -2.26 5.23 30.77 0.16 -2.10 16 19 C 0.12 2.57 6.43 86.43 0.56 3.13 16 20 N -0.60 -10.52 2.92 -822.60 -2.40 -12.92 16 21 C 0.59 13.07 7.58 86.66 0.66 13.72 16 22 O -0.59 -18.55 16.49 -4.07 -0.07 -18.62 16 23 C -0.31 -5.00 5.34 -20.15 -0.11 -5.11 16 24 C 0.09 1.04 9.57 85.65 0.82 1.86 16 25 N -0.32 -4.29 12.63 -56.27 -0.71 -5.00 16 26 N -0.45 -4.37 7.29 -56.32 -0.41 -4.78 16 27 H 0.46 1.42 8.96 -213.43 -1.91 -0.49 16 28 C 0.13 1.62 12.02 84.28 1.01 2.64 16 29 C 0.10 0.93 5.81 86.43 0.50 1.43 16 30 C -0.09 -0.96 5.83 30.77 0.18 -0.78 16 31 H 0.27 14.73 8.31 -92.72 -0.77 13.96 16 32 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.41 12.50 8.47 -92.71 -0.79 11.71 16 37 H 0.08 1.81 7.91 -2.39 -0.02 1.79 16 38 H 0.14 1.28 8.14 -2.39 -0.02 1.27 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.57 7.36 -2.39 -0.02 1.55 16 41 H 0.07 1.86 6.97 -2.39 -0.02 1.84 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.22 1.18 7.09 -2.91 -0.02 1.15 16 44 H 0.21 1.74 8.06 -2.91 -0.02 1.71 16 45 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 46 H 0.11 0.78 3.94 -2.39 -0.01 0.77 16 47 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.11 0.56 8.10 -2.39 -0.02 0.54 16 Total: -1.00 -81.91 396.43 0.17 -81.74 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -1.69 Total: 16.35 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 5.77 Total: 3.69 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -5.81 Total: -104.65 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -0.12 Total: -43.20 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -81.91 0.17 -81.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271300058.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.990 kcal (2) G-P(sol) polarization free energy of solvation -81.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds