Wall clock time and date at job start Sat Apr 11 2020 07:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99791 * 2 1 4 4 H 1.48505 * 109.46827 * 270.00037 * 3 2 1 5 5 H 1.48500 * 109.47248 * 29.99912 * 3 2 1 6 6 H 1.48499 * 109.47151 * 150.00176 * 3 2 1 7 7 C 1.37871 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00170 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47088 * 180.02562 * 9 7 2 11 11 N 1.46511 * 109.47043 * 180.02562 * 10 9 7 12 12 C 1.46948 * 124.34942 * 90.00092 * 11 10 9 13 13 C 1.53684 * 105.32250 * 163.68816 * 12 11 10 14 14 C 1.53864 * 102.59699 * 24.58234 * 13 12 11 15 15 C 1.34513 * 124.34884 * 269.99978 * 11 10 9 16 16 O 1.21276 * 124.94881 * 0.33850 * 15 11 10 17 17 C 1.52267 * 110.87899 * 142.83814 * 13 12 11 18 18 C 1.53215 * 109.37065 * 176.01333 * 17 13 12 19 19 C 1.53040 * 109.45969 * 300.14427 * 18 17 13 20 20 C 1.53209 * 109.49360 * 61.94310 * 19 18 17 21 21 N 1.45958 * 110.85345 * 266.36623 * 13 12 11 22 22 C 1.34771 * 120.64561 * 5.16004 * 21 13 12 23 23 O 1.21606 * 119.99900 * 2.82456 * 22 21 13 24 24 C 1.47430 * 120.00380 * 182.81835 * 22 21 13 25 25 C 1.41288 * 126.41644 * 311.89397 * 24 22 21 26 26 N 1.30446 * 108.02636 * 179.97438 * 25 24 22 27 27 N 1.39940 * 108.89601 * 359.97438 * 26 25 24 28 28 H 0.97000 * 125.75189 * 180.02562 * 27 26 25 29 29 C 1.34259 * 108.48918 * 359.75163 * 27 26 25 30 30 H 0.97000 * 120.00205 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47088 * 60.00783 * 9 7 2 32 32 H 1.08996 * 109.47234 * 300.00590 * 9 7 2 33 33 H 1.09001 * 109.47216 * 60.00882 * 10 9 7 34 34 H 1.08996 * 109.47387 * 300.00279 * 10 9 7 35 35 H 1.09000 * 110.27879 * 44.72888 * 12 11 10 36 36 H 1.09003 * 110.35627 * 282.68987 * 12 11 10 37 37 H 1.08994 * 110.51630 * 94.63579 * 14 13 12 38 38 H 1.09003 * 110.51306 * 217.35898 * 14 13 12 39 39 H 1.08999 * 109.48963 * 295.98191 * 17 13 12 40 40 H 1.08998 * 109.48439 * 56.04712 * 17 13 12 41 41 H 1.08999 * 109.47157 * 180.15365 * 18 17 13 42 42 H 1.09003 * 109.47159 * 60.13956 * 18 17 13 43 43 H 1.08998 * 109.46973 * 301.94203 * 19 18 17 44 44 H 1.08996 * 109.46743 * 181.95407 * 19 18 17 45 45 H 1.08998 * 109.60733 * 184.97780 * 20 19 18 46 46 H 1.09003 * 109.74843 * 64.55185 * 20 19 18 47 47 H 1.08001 * 125.98652 * 359.94331 * 25 24 22 48 48 H 1.08000 * 126.29323 * 180.24040 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 1.0988 -5.6485 -1.2147 13 6 0.7574 -7.0724 -0.7479 14 6 0.4071 -6.8641 0.7358 15 6 1.1331 -5.5884 1.1091 16 8 1.3419 -5.2145 2.2437 17 6 -0.4394 -7.6218 -1.5123 18 6 -0.6876 -9.0742 -1.0922 19 6 0.5526 -9.9144 -1.4052 20 6 1.7437 -9.3884 -0.5978 21 7 1.9113 -7.9554 -0.8866 22 6 3.1070 -7.4677 -1.2724 23 8 3.2453 -6.2740 -1.4590 24 6 4.2474 -8.3813 -1.4681 25 6 4.6778 -9.3887 -0.5758 26 7 5.7140 -9.9797 -1.1037 27 7 5.9918 -9.3878 -2.3410 28 1 6.7116 -9.6393 -2.9407 29 6 5.0904 -8.4174 -2.5607 30 1 -0.4850 0.8400 0.0004 31 1 0.6242 -2.5567 -0.8904 32 1 0.6248 -2.5570 0.8896 33 1 2.8720 -3.6043 0.8895 34 1 2.8721 -3.6042 -0.8904 35 1 1.9155 -5.6733 -1.9362 36 1 0.2212 -5.1747 -1.6546 37 1 -0.6688 -6.7420 0.8608 38 1 0.7699 -7.6994 1.3348 39 1 -1.3214 -7.0223 -1.2867 40 1 -0.2365 -7.5824 -2.5825 41 1 -1.5424 -9.4700 -1.6405 42 1 -0.8923 -9.1130 -0.0222 43 1 0.7776 -9.8476 -2.4696 44 1 0.3637 -10.9542 -1.1385 45 1 2.6466 -9.9275 -0.8844 46 1 1.5571 -9.5275 0.4671 47 1 4.2280 -9.6273 0.3766 48 1 5.0367 -7.7799 -3.4308 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271301742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:03 Heat of formation + Delta-G solvation = 13.700851 kcal Electronic energy + Delta-G solvation = -31949.583177 eV Core-core repulsion = 27813.216078 eV Total energy + Delta-G solvation = -4136.367099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.78248 -41.97544 -40.01029 -38.48105 -37.09717 -35.63152 -34.21554 -33.74120 -32.58064 -31.39509 -31.09110 -29.58352 -27.75439 -26.67354 -25.15238 -24.49586 -23.23181 -22.96990 -22.45157 -21.36572 -20.44464 -19.75288 -18.96131 -18.63017 -17.64153 -17.50958 -17.26206 -16.61003 -16.23824 -16.13646 -16.05780 -15.67295 -15.44667 -15.10916 -14.98259 -14.76859 -14.68783 -14.53784 -14.38294 -14.03811 -13.91639 -13.73115 -13.66909 -13.32784 -13.04074 -12.85581 -12.84137 -12.60013 -12.26739 -12.05727 -11.96957 -11.87156 -11.76760 -11.48072 -11.45861 -11.41317 -10.80724 -10.73065 -10.60439 -10.25802 -9.81574 -9.56559 -9.13286 -8.24386 -6.37571 0.67973 1.19180 1.36763 1.40368 1.51587 1.65413 1.76921 1.94945 2.16965 2.24797 2.43220 3.08037 3.23745 3.37552 3.65077 3.75400 3.95070 3.99853 4.03410 4.16516 4.20917 4.26265 4.35486 4.43064 4.45887 4.57605 4.59175 4.66766 4.71377 4.74592 4.82084 4.89465 4.95767 5.03011 5.09354 5.15356 5.24633 5.32422 5.33259 5.35476 5.45954 5.55594 5.60169 5.76379 5.83759 6.15924 6.25756 6.42963 6.44510 6.53839 6.76208 7.25437 7.28260 7.31924 8.88062 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012581 B = 0.003255 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.082067 B = 8599.083184 C = 9946.935467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.028 3.972 10 C 0.157 3.843 11 N -0.591 5.591 12 C 0.055 3.945 13 C 0.179 3.821 14 C -0.146 4.146 15 C 0.487 3.513 16 O -0.602 6.602 17 C -0.110 4.110 18 C -0.117 4.117 19 C -0.126 4.126 20 C 0.096 3.904 21 N -0.587 5.587 22 C 0.589 3.411 23 O -0.553 6.553 24 C -0.309 4.309 25 C 0.084 3.916 26 N -0.317 5.317 27 N -0.451 5.451 28 H 0.459 0.541 29 C 0.135 3.865 30 H 0.266 0.734 31 H -0.001 1.001 32 H -0.026 1.026 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.151 0.849 36 H 0.057 0.943 37 H 0.128 0.872 38 H 0.118 0.882 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.082 0.918 47 H 0.204 0.796 48 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.860 -29.971 -10.505 31.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.010 4.010 10 C 0.035 3.965 11 N -0.320 5.320 12 C -0.066 4.066 13 C 0.093 3.907 14 C -0.187 4.187 15 C 0.276 3.724 16 O -0.485 6.485 17 C -0.149 4.149 18 C -0.155 4.155 19 C -0.164 4.164 20 C -0.025 4.025 21 N -0.318 5.318 22 C 0.379 3.621 23 O -0.434 6.434 24 C -0.324 4.324 25 C -0.103 4.103 26 N -0.138 5.138 27 N -0.158 5.158 28 H 0.307 0.693 29 C -0.018 4.018 30 H 0.074 0.926 31 H 0.018 0.982 32 H -0.008 1.008 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.167 0.833 36 H 0.075 0.925 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.100 0.900 47 H 0.220 0.780 48 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 4.836 -29.935 -9.892 31.896 hybrid contribution -0.065 2.055 0.048 2.056 sum 4.770 -27.881 -9.843 29.950 Atomic orbital electron populations 1.70119 1.07928 1.27978 1.51083 1.26037 0.95869 1.03571 0.94208 0.85330 0.78415 0.77704 0.78868 1.18912 1.20460 1.19020 1.21511 0.93547 0.91934 1.51536 0.92086 1.19185 0.94420 0.93043 0.94316 1.21109 0.93646 0.81463 1.00316 1.48330 1.54063 1.21941 1.07649 1.23616 1.02973 0.89709 0.90306 1.20663 0.87683 0.88789 0.93565 1.22742 1.02791 0.95110 0.98069 1.21852 0.79035 0.87477 0.84044 1.90633 1.60519 1.73992 1.23394 1.21736 0.94713 0.98260 1.00172 1.21581 0.98619 0.92694 1.02560 1.21872 0.93639 1.00510 1.00418 1.22286 1.01178 0.78107 1.00951 1.47666 1.07591 1.09728 1.66856 1.17816 0.82253 0.86569 0.75448 1.90561 1.82456 1.16886 1.53473 1.20220 1.04730 1.06800 1.00657 1.24294 0.93451 0.92421 1.00157 1.77130 1.18698 1.22442 0.95577 1.46207 1.26289 1.26760 1.16519 0.69324 1.23305 0.87814 0.91255 0.99466 0.92574 0.98248 1.00757 0.94284 0.90671 0.83258 0.92533 0.85436 0.86347 0.89709 0.90189 0.89603 0.90852 0.91469 0.88337 0.87976 0.89969 0.77981 0.77133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.92 13.29 21.45 0.28 -59.64 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 46.86 29.54 68.60 2.03 48.88 16 4 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.55 -34.07 9.11 25.60 0.23 -33.84 16 8 H 0.06 3.65 7.74 -2.91 -0.02 3.63 16 9 C 0.03 1.70 5.30 29.85 0.16 1.86 16 10 C 0.16 8.02 5.74 86.38 0.50 8.52 16 11 N -0.59 -25.39 2.29 -818.70 -1.88 -27.26 16 12 C 0.05 1.79 5.58 86.52 0.48 2.28 16 13 C 0.18 4.02 0.87 3.98 0.00 4.02 16 14 C -0.15 -3.88 5.40 30.38 0.16 -3.72 16 15 C 0.49 20.71 8.04 87.94 0.71 21.42 16 16 O -0.60 -31.79 17.60 -3.02 -0.05 -31.85 16 17 C -0.11 -1.63 4.68 30.42 0.14 -1.49 16 18 C -0.12 -1.04 5.79 30.68 0.18 -0.86 16 19 C -0.13 -0.92 6.05 30.68 0.19 -0.73 16 20 C 0.10 1.03 5.53 86.33 0.48 1.51 16 21 N -0.59 -11.22 2.69 -776.29 -2.09 -13.31 16 22 C 0.59 14.18 7.45 86.67 0.65 14.83 16 23 O -0.55 -18.28 12.17 -4.05 -0.05 -18.33 16 24 C -0.31 -5.65 5.13 -20.15 -0.10 -5.76 16 25 C 0.08 1.36 9.64 85.65 0.83 2.18 16 26 N -0.32 -5.25 12.63 -56.28 -0.71 -5.96 16 27 N -0.45 -5.01 7.29 -56.31 -0.41 -5.42 16 28 H 0.46 1.90 8.96 -213.42 -1.91 -0.02 16 29 C 0.13 1.76 12.02 84.28 1.01 2.77 16 30 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 31 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H -0.03 -1.77 8.14 -2.39 -0.02 -1.79 16 33 H 0.04 2.14 7.93 -2.39 -0.02 2.12 16 34 H 0.07 3.68 8.14 -2.39 -0.02 3.66 16 35 H 0.15 5.10 4.48 -96.35 -0.43 4.67 16 36 H 0.06 1.85 7.86 -2.39 -0.02 1.83 16 37 H 0.13 2.91 7.74 -2.39 -0.02 2.89 16 38 H 0.12 2.63 7.14 -2.39 -0.02 2.61 16 39 H 0.08 1.27 7.95 -2.39 -0.02 1.25 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.07 0.63 7.64 -2.39 -0.02 0.61 16 43 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.10 0.95 4.65 -2.39 -0.01 0.94 16 46 H 0.08 0.75 7.42 -2.39 -0.02 0.73 16 47 H 0.20 2.43 7.58 -2.91 -0.02 2.41 16 48 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -91.82 381.07 1.86 -89.96 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -1.34 Total: 9.41 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 6.07 Total: 13.52 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -4.80 Total: -111.60 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -0.10 Total: -50.18 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -91.82 1.86 -89.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271301742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.664 kcal (2) G-P(sol) polarization free energy of solvation -91.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds