Wall clock time and date at job start Sat Apr 11 2020 07:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00038 * 2 1 4 4 H 1.48500 * 109.46952 * 270.00639 * 3 2 1 5 5 H 1.48504 * 109.46925 * 30.00184 * 3 2 1 6 6 H 1.48496 * 109.47239 * 150.00203 * 3 2 1 7 7 C 1.37876 * 120.00450 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99629 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00399 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47448 * 179.97438 * 9 7 2 11 11 N 1.46491 * 109.47502 * 179.97438 * 10 9 7 12 12 C 1.46946 * 124.35264 * 269.95711 * 11 10 9 13 13 C 1.53713 * 105.31682 * 196.33029 * 12 11 10 14 14 C 1.53826 * 102.60271 * 335.41659 * 13 12 11 15 15 C 1.34516 * 124.35109 * 89.97463 * 11 10 9 16 16 O 1.21277 * 124.94435 * 359.62757 * 15 11 10 17 17 C 1.52267 * 110.80787 * 217.11849 * 13 12 11 18 18 C 1.53210 * 109.37585 * 289.03733 * 17 13 12 19 19 C 1.53043 * 109.45295 * 300.13831 * 18 17 13 20 20 C 1.53198 * 109.49389 * 61.95003 * 19 18 17 21 21 N 1.45958 * 110.80121 * 93.68351 * 13 12 11 22 22 C 1.34772 * 120.64348 * 251.91536 * 21 13 12 23 23 O 1.21609 * 119.99957 * 4.95581 * 22 21 13 24 24 C 1.47425 * 120.00276 * 184.94991 * 22 21 13 25 25 C 1.41292 * 126.41474 * 312.65591 * 24 22 21 26 26 N 1.30451 * 108.02531 * 179.87856 * 25 24 22 27 27 N 1.39934 * 108.89212 * 0.38788 * 26 25 24 28 28 H 0.97001 * 125.75007 * 179.73097 * 27 26 25 29 29 C 1.34258 * 108.49761 * 359.75080 * 27 26 25 30 30 H 0.96995 * 120.00459 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47324 * 59.99629 * 9 7 2 32 32 H 1.08998 * 109.46857 * 299.99690 * 9 7 2 33 33 H 1.09001 * 109.47034 * 59.99607 * 10 9 7 34 34 H 1.08995 * 109.46932 * 300.00304 * 10 9 7 35 35 H 1.09002 * 110.27969 * 77.36485 * 12 11 10 36 36 H 1.09001 * 110.27176 * 315.28247 * 12 11 10 37 37 H 1.09000 * 110.51422 * 142.63393 * 14 13 12 38 38 H 1.08998 * 110.51970 * 265.21813 * 14 13 12 39 39 H 1.08997 * 109.48798 * 49.01077 * 17 13 12 40 40 H 1.09006 * 109.49010 * 169.06682 * 17 13 12 41 41 H 1.09007 * 109.46965 * 60.12632 * 18 17 13 42 42 H 1.08997 * 109.47488 * 180.13608 * 18 17 13 43 43 H 1.09005 * 109.46677 * 181.95294 * 19 18 17 44 44 H 1.09000 * 109.46763 * 301.94449 * 19 18 17 45 45 H 1.08996 * 109.60595 * 184.98287 * 20 19 18 46 46 H 1.08998 * 109.61075 * 64.46864 * 20 19 18 47 47 H 1.08001 * 125.98747 * 0.02562 * 25 24 22 48 48 H 1.07992 * 126.29684 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6365 -0.0010 11 7 5.4866 -2.6365 -0.0022 12 6 6.3148 -2.6378 -1.2160 13 6 7.7189 -3.0541 -0.7491 14 6 7.7143 -2.6456 0.7339 15 6 6.2465 -2.6356 1.1078 16 8 5.8187 -2.6282 2.2425 17 6 8.7917 -2.2931 -1.5160 18 6 8.8380 -2.7982 -2.9617 19 6 9.1635 -4.2936 -2.9690 20 6 8.0573 -5.0612 -2.2380 21 7 7.9054 -4.4951 -0.8883 22 6 7.9433 -5.2910 0.1986 23 8 7.7320 -4.8245 1.3016 24 6 8.2409 -6.7273 0.0505 25 6 7.6590 -7.6124 -0.8846 26 7 8.1827 -8.7932 -0.7027 27 7 9.1045 -8.7232 0.3478 28 1 9.6317 -9.4623 0.6894 29 6 9.1359 -7.4607 0.8035 30 1 -0.4850 0.8400 0.0004 31 1 3.8753 -0.6803 0.8888 32 1 3.8745 -0.6800 -0.8912 33 1 3.6580 -3.1505 -0.8907 34 1 3.6587 -3.1501 0.8892 35 1 6.3430 -1.6406 -1.6553 36 1 5.9275 -3.3581 -1.9367 37 1 8.2561 -3.3771 1.3334 38 1 8.1491 -1.6539 0.8584 39 1 8.5571 -1.2287 -1.5101 40 1 9.7605 -2.4547 -1.0433 41 1 7.8696 -2.6349 -3.4348 42 1 9.6072 -2.2561 -3.5117 43 1 9.2306 -4.6458 -3.9984 44 1 10.1154 -4.4606 -2.4651 45 1 8.3298 -6.1139 -2.1646 46 1 7.1197 -4.9606 -2.7846 47 1 6.9132 -7.3557 -1.6223 48 1 9.7483 -7.0875 1.6109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271301744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:06 Heat of formation + Delta-G solvation = 44.556551 kcal Electronic energy + Delta-G solvation = -31942.115852 eV Core-core repulsion = 27807.086756 eV Total energy + Delta-G solvation = -4135.029095 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.00816 -41.15929 -38.69764 -37.71368 -35.46321 -33.99958 -33.35392 -32.35684 -31.94735 -30.52114 -30.12365 -28.15807 -26.89412 -25.16374 -24.15013 -23.72380 -22.39142 -21.81740 -20.96723 -20.62223 -19.50351 -18.57920 -18.20819 -16.92025 -16.70925 -16.55446 -15.94243 -15.43990 -15.13606 -15.02942 -14.85928 -14.76932 -14.40199 -14.19394 -14.12622 -13.92753 -13.55590 -13.30750 -12.99412 -12.93904 -12.86197 -12.64880 -12.52743 -12.26924 -11.90693 -11.53723 -11.50417 -11.36004 -11.24056 -10.97684 -10.94859 -10.87431 -10.38871 -10.17081 -9.94729 -9.81159 -9.45624 -9.25769 -8.99818 -8.88535 -8.70820 -8.50612 -7.96631 -6.01531 -3.99834 1.25175 1.85111 2.29659 2.63991 2.87177 3.32918 3.36274 3.41478 3.48632 3.63479 4.07761 4.33966 4.39041 4.45326 4.49223 4.49387 4.58497 4.71210 4.75534 4.85111 4.94940 5.08936 5.14428 5.24038 5.26993 5.32963 5.34349 5.51339 5.60370 5.63347 5.67338 5.71170 5.72504 5.81389 5.94242 5.97631 6.04691 6.17660 6.43094 6.65559 6.67815 6.70074 6.99798 7.07852 7.19762 7.27213 7.47185 7.79749 7.86425 8.08773 8.53829 8.89375 9.02262 9.60830 11.11711 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.014721 B = 0.003146 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.576595 B = 8898.622000 C = 9536.265266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.073 0.927 9 C -0.024 4.024 10 C 0.141 3.859 11 N -0.621 5.621 12 C 0.099 3.901 13 C 0.164 3.836 14 C -0.194 4.194 15 C 0.532 3.468 16 O -0.530 6.530 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.133 4.133 20 C 0.098 3.902 21 N -0.590 5.590 22 C 0.594 3.406 23 O -0.511 6.511 24 C -0.284 4.284 25 C 0.083 3.917 26 N -0.293 5.293 27 N -0.464 5.464 28 H 0.444 0.556 29 C 0.121 3.879 30 H 0.263 0.737 31 H 0.020 0.980 32 H 0.011 0.989 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.170 0.830 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.192 0.808 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.338 -14.622 -8.370 32.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.062 4.062 10 C 0.020 3.980 11 N -0.355 5.355 12 C -0.027 4.027 13 C 0.078 3.922 14 C -0.233 4.233 15 C 0.320 3.680 16 O -0.406 6.406 17 C -0.152 4.152 18 C -0.161 4.161 19 C -0.171 4.171 20 C -0.024 4.024 21 N -0.322 5.322 22 C 0.383 3.617 23 O -0.388 6.388 24 C -0.299 4.299 25 C -0.105 4.105 26 N -0.114 5.114 27 N -0.170 5.170 28 H 0.289 0.711 29 C -0.031 4.031 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.029 0.971 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.186 0.814 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.092 0.908 47 H 0.209 0.791 48 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 26.731 -15.477 -7.583 31.805 hybrid contribution 0.430 1.484 0.145 1.552 sum 27.161 -13.993 -7.438 31.446 Atomic orbital electron populations 1.69907 1.06254 1.26906 1.51064 1.24974 0.94706 0.99112 0.94432 0.86772 0.80587 0.83610 0.78342 1.20335 1.21312 1.18980 1.20986 0.89009 0.94664 1.51072 0.90865 1.19890 0.97187 0.92508 0.96623 1.21486 0.74807 0.99834 1.01848 1.48556 1.07238 1.73748 1.05999 1.22341 0.89760 1.01728 0.88821 1.20740 0.94722 0.79830 0.96867 1.23753 0.98291 1.05461 0.95808 1.20505 0.88247 0.74747 0.84523 1.90665 1.78452 1.50267 1.21213 1.21735 0.98296 0.99855 0.95361 1.21590 1.02627 0.95516 0.96326 1.21893 0.98744 0.95739 1.00714 1.22069 0.99364 0.98798 0.82195 1.47542 1.71973 1.06234 1.06433 1.17427 0.76004 0.84481 0.83759 1.90618 1.48927 1.72828 1.26471 1.20298 1.08672 0.95648 1.05308 1.24115 0.98853 0.89458 0.98043 1.77184 1.06488 1.22009 1.05766 1.46194 1.33985 1.09319 1.27484 0.71105 1.22930 0.98141 0.84520 0.97503 0.92711 0.96125 0.97067 0.91536 0.90761 0.90497 0.90551 0.81412 0.89296 0.89854 0.90796 0.91126 0.91238 0.90547 0.91454 0.88771 0.90778 0.79141 0.79444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.49 13.96 55.43 0.77 -27.72 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.61 27.47 -169.99 -4.67 17.95 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.27 -6.77 6.54 56.52 0.37 -6.40 16 7 C -0.52 -15.33 9.66 -34.44 -0.33 -15.66 16 8 H 0.07 2.29 7.99 -52.48 -0.42 1.87 16 9 C -0.02 -0.60 4.37 -27.88 -0.12 -0.73 16 10 C 0.14 3.08 5.87 -4.05 -0.02 3.05 16 11 N -0.62 -11.70 2.94 -172.65 -0.51 -12.21 16 12 C 0.10 1.32 5.93 -3.43 -0.02 1.30 16 13 C 0.16 1.83 0.87 -131.69 -0.11 1.72 16 14 C -0.19 -2.87 5.38 -27.08 -0.15 -3.02 16 15 C 0.53 10.81 6.83 -10.73 -0.07 10.74 16 16 O -0.53 -13.35 17.60 5.56 0.10 -13.25 16 17 C -0.11 -0.90 4.68 -27.00 -0.13 -1.03 16 18 C -0.12 -0.74 5.79 -26.60 -0.15 -0.90 16 19 C -0.13 -0.70 6.05 -26.61 -0.16 -0.86 16 20 C 0.10 0.65 5.54 -3.59 -0.02 0.63 16 21 N -0.59 -5.86 2.69 -159.35 -0.43 -6.29 16 22 C 0.59 7.12 7.42 -12.52 -0.09 7.03 16 23 O -0.51 -8.20 11.91 5.27 0.06 -8.14 16 24 C -0.28 -2.68 5.21 -105.07 -0.55 -3.23 16 25 C 0.08 0.71 9.61 -16.98 -0.16 0.55 16 26 N -0.29 -2.61 12.63 30.86 0.39 -2.22 16 27 N -0.46 -2.88 7.29 30.85 0.22 -2.66 16 28 H 0.44 1.22 8.96 -182.72 -1.64 -0.41 16 29 C 0.12 0.85 12.02 -16.56 -0.20 0.65 16 30 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 31 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 32 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.07 1.78 7.93 -51.93 -0.41 1.37 16 35 H 0.08 0.97 7.72 -51.93 -0.40 0.57 16 36 H 0.08 0.91 7.13 -51.93 -0.37 0.54 16 37 H 0.17 2.62 4.48 -57.78 -0.26 2.36 16 38 H 0.09 1.17 7.87 -51.93 -0.41 0.76 16 39 H 0.08 0.65 7.94 -51.93 -0.41 0.23 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.44 7.65 -51.93 -0.40 0.05 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.55 4.44 -51.93 -0.23 0.32 16 46 H 0.07 0.46 7.42 -51.93 -0.39 0.07 16 47 H 0.19 1.26 7.42 -52.49 -0.39 0.87 16 48 H 0.19 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 376.75 15.07 5.68 5.68 Total: -1.00 -40.12 376.75 -8.97 -49.08 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -8.19 Total: -2.46 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -2.39 Total: 2.22 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.45 Total: -51.09 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: 0.16 Total: -21.39 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.67 Total: 17.95 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -40.12 -8.97 -49.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271301744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.640 kcal (2) G-P(sol) polarization free energy of solvation -40.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds