Wall clock time and date at job start Sat Apr 11 2020 07:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00038 * 2 1 4 4 H 1.48500 * 109.46952 * 270.00639 * 3 2 1 5 5 H 1.48504 * 109.46925 * 30.00184 * 3 2 1 6 6 H 1.48496 * 109.47239 * 150.00203 * 3 2 1 7 7 C 1.37876 * 120.00450 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99629 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00399 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47448 * 179.97438 * 9 7 2 11 11 N 1.46491 * 109.47502 * 179.97438 * 10 9 7 12 12 C 1.46946 * 124.35264 * 269.95711 * 11 10 9 13 13 C 1.53713 * 105.31682 * 196.33029 * 12 11 10 14 14 C 1.53826 * 102.60271 * 335.41659 * 13 12 11 15 15 C 1.34516 * 124.35109 * 89.97463 * 11 10 9 16 16 O 1.21277 * 124.94435 * 359.62757 * 15 11 10 17 17 C 1.52267 * 110.80787 * 217.11849 * 13 12 11 18 18 C 1.53210 * 109.37585 * 289.03733 * 17 13 12 19 19 C 1.53043 * 109.45295 * 300.13831 * 18 17 13 20 20 C 1.53198 * 109.49389 * 61.95003 * 19 18 17 21 21 N 1.45958 * 110.80121 * 93.68351 * 13 12 11 22 22 C 1.34772 * 120.64348 * 251.91536 * 21 13 12 23 23 O 1.21609 * 119.99957 * 4.95581 * 22 21 13 24 24 C 1.47425 * 120.00276 * 184.94991 * 22 21 13 25 25 C 1.41292 * 126.41474 * 312.65591 * 24 22 21 26 26 N 1.30451 * 108.02531 * 179.87856 * 25 24 22 27 27 N 1.39934 * 108.89212 * 0.38788 * 26 25 24 28 28 H 0.97001 * 125.75007 * 179.73097 * 27 26 25 29 29 C 1.34258 * 108.49761 * 359.75080 * 27 26 25 30 30 H 0.96995 * 120.00459 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47324 * 59.99629 * 9 7 2 32 32 H 1.08998 * 109.46857 * 299.99690 * 9 7 2 33 33 H 1.09001 * 109.47034 * 59.99607 * 10 9 7 34 34 H 1.08995 * 109.46932 * 300.00304 * 10 9 7 35 35 H 1.09002 * 110.27969 * 77.36485 * 12 11 10 36 36 H 1.09001 * 110.27176 * 315.28247 * 12 11 10 37 37 H 1.09000 * 110.51422 * 142.63393 * 14 13 12 38 38 H 1.08998 * 110.51970 * 265.21813 * 14 13 12 39 39 H 1.08997 * 109.48798 * 49.01077 * 17 13 12 40 40 H 1.09006 * 109.49010 * 169.06682 * 17 13 12 41 41 H 1.09007 * 109.46965 * 60.12632 * 18 17 13 42 42 H 1.08997 * 109.47488 * 180.13608 * 18 17 13 43 43 H 1.09005 * 109.46677 * 181.95294 * 19 18 17 44 44 H 1.09000 * 109.46763 * 301.94449 * 19 18 17 45 45 H 1.08996 * 109.60595 * 184.98287 * 20 19 18 46 46 H 1.08998 * 109.61075 * 64.46864 * 20 19 18 47 47 H 1.08001 * 125.98747 * 0.02562 * 25 24 22 48 48 H 1.07992 * 126.29684 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6365 -0.0010 11 7 5.4866 -2.6365 -0.0022 12 6 6.3148 -2.6378 -1.2160 13 6 7.7189 -3.0541 -0.7491 14 6 7.7143 -2.6456 0.7339 15 6 6.2465 -2.6356 1.1078 16 8 5.8187 -2.6282 2.2425 17 6 8.7917 -2.2931 -1.5160 18 6 8.8380 -2.7982 -2.9617 19 6 9.1635 -4.2936 -2.9690 20 6 8.0573 -5.0612 -2.2380 21 7 7.9054 -4.4951 -0.8883 22 6 7.9433 -5.2910 0.1986 23 8 7.7320 -4.8245 1.3016 24 6 8.2409 -6.7273 0.0505 25 6 7.6590 -7.6124 -0.8846 26 7 8.1827 -8.7932 -0.7027 27 7 9.1045 -8.7232 0.3478 28 1 9.6317 -9.4623 0.6894 29 6 9.1359 -7.4607 0.8035 30 1 -0.4850 0.8400 0.0004 31 1 3.8753 -0.6803 0.8888 32 1 3.8745 -0.6800 -0.8912 33 1 3.6580 -3.1505 -0.8907 34 1 3.6587 -3.1501 0.8892 35 1 6.3430 -1.6406 -1.6553 36 1 5.9275 -3.3581 -1.9367 37 1 8.2561 -3.3771 1.3334 38 1 8.1491 -1.6539 0.8584 39 1 8.5571 -1.2287 -1.5101 40 1 9.7605 -2.4547 -1.0433 41 1 7.8696 -2.6349 -3.4348 42 1 9.6072 -2.2561 -3.5117 43 1 9.2306 -4.6458 -3.9984 44 1 10.1154 -4.4606 -2.4651 45 1 8.3298 -6.1139 -2.1646 46 1 7.1197 -4.9606 -2.7846 47 1 6.9132 -7.3557 -1.6223 48 1 9.7483 -7.0875 1.6109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271301744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:05 Heat of formation + Delta-G solvation = 14.420231 kcal Electronic energy + Delta-G solvation = -31943.422660 eV Core-core repulsion = 27807.086756 eV Total energy + Delta-G solvation = -4136.335904 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.81276 -41.99228 -39.98208 -38.62296 -36.98456 -35.63241 -34.36581 -33.83161 -32.61013 -31.79491 -31.09417 -29.32184 -28.06301 -26.65399 -25.07473 -24.53092 -23.07646 -22.95249 -22.40139 -21.44733 -20.52789 -19.68477 -19.07006 -18.93107 -17.63679 -17.57770 -17.29557 -16.52946 -16.24697 -16.08079 -16.02346 -15.69603 -15.47896 -15.14901 -15.00344 -14.91287 -14.78712 -14.60338 -14.44198 -14.10409 -14.01379 -13.80140 -13.70975 -13.45088 -13.09370 -12.95954 -12.89809 -12.40700 -12.20279 -12.01395 -11.94662 -11.81848 -11.81123 -11.57493 -11.49728 -11.44861 -10.81704 -10.74890 -10.66764 -10.20727 -9.77138 -9.60658 -9.41918 -8.34575 -6.39799 0.65031 1.15242 1.29062 1.34460 1.46535 1.73045 1.76832 1.95979 2.12615 2.21161 2.32097 3.00018 3.23544 3.46743 3.63495 3.74951 3.93041 3.98046 4.02966 4.14980 4.18157 4.30095 4.31039 4.39545 4.41504 4.46870 4.59453 4.61290 4.66016 4.70165 4.76835 4.81131 4.97849 5.03427 5.10956 5.13381 5.15063 5.25483 5.30504 5.32843 5.34111 5.48322 5.56104 5.71881 5.80239 6.19254 6.24273 6.33299 6.41016 6.52106 6.65927 7.21961 7.24605 7.33805 8.81918 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.014721 B = 0.003146 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.576595 B = 8898.622000 C = 9536.265266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.951 3.049 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.534 4.534 8 H 0.037 0.963 9 C -0.011 4.011 10 C 0.151 3.849 11 N -0.623 5.623 12 C 0.089 3.911 13 C 0.176 3.824 14 C -0.187 4.187 15 C 0.516 3.484 16 O -0.595 6.595 17 C -0.109 4.109 18 C -0.121 4.121 19 C -0.126 4.126 20 C 0.093 3.907 21 N -0.585 5.585 22 C 0.590 3.410 23 O -0.561 6.561 24 C -0.311 4.311 25 C 0.084 3.916 26 N -0.317 5.317 27 N -0.450 5.450 28 H 0.459 0.541 29 C 0.136 3.864 30 H 0.269 0.731 31 H -0.004 1.004 32 H 0.032 0.968 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.166 0.834 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.205 0.795 48 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.627 -14.259 -11.136 35.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.774 3.226 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.573 4.573 8 H 0.055 0.945 9 C -0.049 4.049 10 C 0.029 3.971 11 N -0.356 5.356 12 C -0.034 4.034 13 C 0.090 3.910 14 C -0.225 4.225 15 C 0.307 3.693 16 O -0.476 6.476 17 C -0.147 4.147 18 C -0.158 4.158 19 C -0.164 4.164 20 C -0.028 4.028 21 N -0.316 5.316 22 C 0.381 3.619 23 O -0.443 6.443 24 C -0.326 4.326 25 C -0.104 4.104 26 N -0.138 5.138 27 N -0.157 5.157 28 H 0.307 0.693 29 C -0.018 4.018 30 H 0.078 0.922 31 H 0.014 0.986 32 H 0.050 0.950 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.182 0.818 38 H 0.124 0.876 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.115 0.885 44 H 0.086 0.914 45 H 0.121 0.879 46 H 0.101 0.899 47 H 0.221 0.779 48 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 30.065 -15.162 -10.450 35.256 hybrid contribution -0.648 1.234 1.036 1.737 sum 29.417 -13.927 -9.414 33.881 Atomic orbital electron populations 1.70043 1.08094 1.28341 1.52061 1.25939 0.95637 1.03347 0.93799 0.85655 0.78844 0.78361 0.79754 1.17482 1.20705 1.18910 1.21266 0.91231 0.93594 1.51187 0.94459 1.19713 0.94453 0.94612 0.96124 1.21081 0.77322 0.97524 1.01161 1.48623 1.06129 1.72840 1.08003 1.22772 0.90154 1.03488 0.86936 1.20718 0.94649 0.81094 0.94544 1.23689 0.93868 1.06483 0.98481 1.21551 0.90717 0.73273 0.83806 1.90607 1.80028 1.53117 1.23824 1.21747 0.97097 0.99624 0.96229 1.21607 1.03374 0.96006 0.94811 1.21871 0.97918 0.95067 1.01580 1.22341 1.00556 0.99517 0.80400 1.47660 1.70848 1.05647 1.07448 1.17806 0.75172 0.85495 0.83400 1.90602 1.51385 1.73962 1.28380 1.20227 1.10620 0.94665 1.07114 1.24321 0.98858 0.89104 0.98067 1.77143 1.07479 1.22265 1.06955 1.46212 1.33266 1.09662 1.26581 0.69285 1.23313 0.97201 0.84326 0.96940 0.92232 0.98553 0.94972 0.89498 0.94241 0.88787 0.88657 0.81823 0.87638 0.89246 0.89901 0.91001 0.89536 0.88503 0.91393 0.87917 0.89938 0.77889 0.77022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 2 C 0.01 0.63 5.47 84.65 0.46 1.09 16 3 Si 0.95 46.50 27.47 68.60 1.88 48.38 16 4 H -0.25 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.26 -12.84 6.54 99.48 0.65 -12.19 16 7 C -0.53 -32.54 9.66 25.60 0.25 -32.29 16 8 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 9 C -0.01 -0.55 4.37 29.85 0.13 -0.42 16 10 C 0.15 6.80 5.87 86.38 0.51 7.31 16 11 N -0.62 -23.53 2.94 -818.67 -2.41 -25.94 16 12 C 0.09 2.20 5.93 86.53 0.51 2.72 16 13 C 0.18 3.56 0.87 3.98 0.00 3.56 16 14 C -0.19 -5.44 5.38 30.37 0.16 -5.27 16 15 C 0.52 21.59 6.83 87.94 0.60 22.20 16 16 O -0.59 -31.80 17.60 -3.02 -0.05 -31.85 16 17 C -0.11 -1.32 4.68 30.42 0.14 -1.18 16 18 C -0.12 -0.92 5.79 30.68 0.18 -0.74 16 19 C -0.13 -0.81 6.05 30.68 0.19 -0.63 16 20 C 0.09 0.94 5.54 86.32 0.48 1.42 16 21 N -0.59 -10.52 2.69 -776.33 -2.09 -12.61 16 22 C 0.59 13.79 7.42 86.66 0.64 14.44 16 23 O -0.56 -18.48 11.91 -4.06 -0.05 -18.53 16 24 C -0.31 -5.52 5.21 -20.15 -0.10 -5.63 16 25 C 0.08 1.32 9.61 85.65 0.82 2.14 16 26 N -0.32 -5.14 12.63 -56.27 -0.71 -5.85 16 27 N -0.45 -4.74 7.29 -56.32 -0.41 -5.15 16 28 H 0.46 1.58 8.96 -213.43 -1.91 -0.33 16 29 C 0.14 1.67 12.02 84.28 1.01 2.68 16 30 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 31 H 0.00 -0.22 7.20 -2.39 -0.02 -0.24 16 32 H 0.03 1.52 7.57 -2.39 -0.02 1.50 16 33 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 34 H 0.04 2.02 7.93 -2.39 -0.02 2.00 16 35 H 0.09 2.05 7.72 -2.39 -0.02 2.03 16 36 H 0.10 2.00 7.13 -2.39 -0.02 1.98 16 37 H 0.17 5.19 4.48 -95.11 -0.43 4.76 16 38 H 0.11 2.66 7.87 -2.39 -0.02 2.64 16 39 H 0.09 1.03 7.94 -2.39 -0.02 1.01 16 40 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.07 0.57 7.65 -2.38 -0.02 0.55 16 42 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 44 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.10 0.92 4.44 -2.39 -0.01 0.91 16 46 H 0.08 0.73 7.42 -2.39 -0.02 0.71 16 47 H 0.20 2.38 7.42 -2.91 -0.02 2.36 16 48 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -92.65 376.75 1.07 -91.58 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -1.38 Total: 9.15 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 5.99 Total: 11.40 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -5.32 Total: -110.14 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.10 Total: -50.38 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.88 Total: 48.38 kcal Total: -92.65 1.07 -91.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271301744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.003 kcal (2) G-P(sol) polarization free energy of solvation -92.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds