Wall clock time and date at job start Sat Apr 11 2020 07:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48503 * 109.47050 * 239.99222 * 3 2 1 5 5 H 1.48498 * 109.47427 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47067 * 119.99671 * 3 2 1 7 7 C 1.37879 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00151 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99935 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47235 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46940 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00442 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99812 * 179.97438 * 11 10 9 14 14 C 1.46839 * 120.38048 * 359.73476 * 13 11 10 15 15 C 1.52871 * 109.07607 * 236.84939 * 14 13 11 16 16 C 1.53180 * 108.82779 * 308.91356 * 15 14 13 17 17 C 1.52853 * 117.65943 * 269.84942 * 16 15 14 18 18 C 1.52812 * 117.71613 * 200.98611 * 16 15 14 19 19 H 1.09000 * 117.50073 * 0.13988 * 18 16 15 20 20 C 1.50705 * 117.49955 * 215.10107 * 18 16 15 21 21 O 1.21306 * 119.99968 * 263.94537 * 20 18 16 22 22 N 1.34775 * 119.99745 * 83.95534 * 20 18 16 23 23 C 1.40764 * 119.99512 * 179.97438 * 22 20 18 24 24 C 1.40251 * 126.08513 * 0.02562 * 23 22 20 25 25 N 1.30822 * 108.34036 * 179.97438 * 24 23 22 26 26 N 1.40068 * 108.36744 * 0.02562 * 25 24 23 27 27 H 0.97002 * 126.05414 * 180.02562 * 26 25 24 28 28 C 1.35760 * 126.07838 * 179.71419 * 23 22 20 29 29 C 1.53189 * 115.07317 * 55.31545 * 16 15 14 30 30 C 1.46845 * 120.38203 * 180.02562 * 13 11 10 31 31 H 0.96998 * 119.99956 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.47009 * 59.99045 * 9 7 2 33 33 H 1.09007 * 109.46883 * 299.99820 * 9 7 2 34 34 H 1.09000 * 109.46886 * 59.99998 * 10 9 7 35 35 H 1.08997 * 109.46805 * 300.00016 * 10 9 7 36 36 H 1.08999 * 109.58232 * 356.68507 * 14 13 11 37 37 H 1.09002 * 109.58059 * 117.09102 * 14 13 11 38 38 H 1.08999 * 109.66735 * 189.04341 * 15 14 13 39 39 H 1.08996 * 109.44676 * 68.65561 * 15 14 13 40 40 H 1.09000 * 117.49972 * 359.75456 * 17 16 15 41 41 H 1.08995 * 117.50273 * 144.78313 * 17 16 15 42 42 H 0.96996 * 120.00333 * 359.97438 * 22 20 18 43 43 H 1.08004 * 125.82957 * 359.96800 * 24 23 22 44 44 H 1.08001 * 126.21480 * 0.02740 * 28 23 22 45 45 H 1.09003 * 109.58602 * 184.77080 * 29 16 15 46 46 H 1.09001 * 109.58859 * 64.33579 * 29 16 15 47 47 H 1.08993 * 109.58105 * 242.91434 * 30 13 11 48 48 H 1.09001 * 109.57844 * 3.31468 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4917 -4.9671 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1656 -6.1343 0.0008 14 6 3.6339 -6.1441 -0.0062 15 6 4.1226 -6.9404 -1.2162 16 6 3.4143 -8.2985 -1.2331 17 6 4.0836 -9.4570 -0.4940 18 6 4.0676 -9.4310 -2.0241 19 1 5.0062 -9.2128 -2.5336 20 6 3.1568 -10.4043 -2.7272 21 8 2.8650 -11.4547 -2.1952 22 7 2.6666 -10.1077 -3.9471 23 6 1.8163 -11.0171 -4.6040 24 6 1.3977 -12.2612 -4.1100 25 7 0.6164 -12.8160 -5.0006 26 7 0.5080 -11.9480 -6.0946 27 1 -0.0098 -12.1058 -6.8995 28 6 1.2509 -10.8432 -5.8259 29 6 1.8839 -8.2328 -1.2148 30 6 1.4399 -7.4109 0.0008 31 1 -0.4850 0.8400 -0.0004 32 1 0.6246 -2.5570 -0.8896 33 1 0.6241 -2.5567 0.8904 34 1 2.8719 -3.6043 0.8905 35 1 2.8719 -3.6043 -0.8894 36 1 4.0058 -5.1215 -0.0698 37 1 4.0005 -6.6121 0.9075 38 1 5.1998 -7.0909 -1.1456 39 1 3.8869 -6.3939 -2.1294 40 1 5.0326 -9.2558 0.0029 41 1 3.4353 -10.1777 0.0043 42 1 2.8997 -9.2677 -4.3724 43 1 1.6734 -12.6883 -3.1571 44 1 1.3722 -9.9839 -6.4687 45 1 1.4757 -9.2410 -1.1432 46 1 1.5277 -7.7560 -2.1280 47 1 1.6661 -7.9597 0.9149 48 1 0.3680 -7.2217 -0.0582 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271767704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:54:17 Heat of formation + Delta-G solvation = 25.137523 kcal Electronic energy + Delta-G solvation = -29889.041007 eV Core-core repulsion = 25753.169839 eV Total energy + Delta-G solvation = -4135.871168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.71921 -40.67245 -39.51623 -37.96085 -35.23388 -35.01656 -33.54434 -31.82009 -31.62537 -30.74844 -29.98351 -29.30789 -25.90258 -24.81974 -23.80569 -23.53078 -22.71506 -21.49064 -21.18777 -20.47114 -19.58706 -18.44993 -18.13398 -17.38637 -17.01825 -16.13031 -16.01794 -15.62152 -15.45416 -15.30153 -15.12443 -14.70435 -14.55354 -14.43373 -14.10270 -14.02100 -13.58031 -13.43038 -13.23945 -12.98065 -12.52060 -12.31161 -12.18712 -12.08314 -11.75514 -11.40613 -11.27254 -11.24887 -11.20404 -10.93080 -10.89599 -10.61250 -10.48911 -10.31162 -9.99367 -9.97317 -9.96869 -9.61271 -9.19209 -8.99855 -8.42446 -8.31845 -8.18608 -5.97115 -4.01760 1.36904 2.02111 2.29669 2.72452 2.85777 3.16488 3.27216 3.32804 3.37658 3.38094 3.39550 4.15881 4.29672 4.41047 4.45535 4.47413 4.53448 4.60159 4.74206 4.93513 5.09160 5.11554 5.16775 5.20493 5.25217 5.37614 5.42310 5.46449 5.51045 5.55878 5.66071 5.67313 5.76816 5.79961 5.89449 6.00634 6.06201 6.18608 6.20143 6.47170 6.73475 6.85487 6.89723 7.00413 7.29749 7.72596 7.74738 7.82345 7.85109 8.06159 8.37121 8.73933 9.06644 9.61697 11.13754 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.002044 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.378719 B =13692.234197 C =14457.109535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.512 3.488 12 O -0.534 6.534 13 N -0.623 5.623 14 C 0.112 3.888 15 C -0.100 4.100 16 C -0.094 4.094 17 C -0.133 4.133 18 C -0.186 4.186 19 H 0.132 0.868 20 C 0.551 3.449 21 O -0.527 6.527 22 N -0.640 5.640 23 C 0.002 3.998 24 C 0.054 3.946 25 N -0.285 5.285 26 N -0.475 5.475 27 H 0.444 0.556 28 C 0.022 3.978 29 C -0.100 4.100 30 C 0.116 3.884 31 H 0.261 0.739 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.413 0.587 43 H 0.206 0.794 44 H 0.181 0.819 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.515 -23.149 -9.928 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.302 3.698 12 O -0.409 6.409 13 N -0.359 5.359 14 C -0.011 4.011 15 C -0.138 4.138 16 C -0.095 4.095 17 C -0.170 4.170 18 C -0.207 4.207 19 H 0.150 0.850 20 C 0.339 3.661 21 O -0.403 6.403 22 N -0.285 5.285 23 C -0.103 4.103 24 C -0.134 4.134 25 N -0.108 5.108 26 N -0.187 5.187 27 H 0.288 0.712 28 C -0.127 4.127 29 C -0.138 4.138 30 C -0.007 4.007 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.248 0.752 43 H 0.222 0.778 44 H 0.198 0.802 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.803 -24.747 -9.764 28.022 hybrid contribution 1.011 1.981 -0.671 2.323 sum 9.813 -22.767 -10.435 26.898 Atomic orbital electron populations 1.69987 1.06055 1.26700 1.50053 1.25029 0.94825 0.99217 0.95323 0.86656 0.79547 0.83210 0.78526 1.20271 1.21305 1.20239 1.21176 0.92851 0.91014 1.51542 0.92671 1.18901 0.93183 0.89383 0.98583 1.21875 1.00709 0.92012 1.02204 1.21601 0.88429 0.85532 0.74207 1.90660 1.14462 1.87150 1.48643 1.48219 1.06325 1.05827 1.75564 1.21544 0.80274 1.01815 0.97507 1.21543 0.99231 0.93104 0.99905 1.21598 0.95294 0.90461 1.02106 1.23116 1.03046 0.99975 0.90892 1.22306 1.01145 1.01013 0.96189 0.85024 1.19732 0.79760 0.86670 0.79979 1.90591 1.58891 1.25342 1.65431 1.42807 1.46862 1.20603 1.18202 1.17821 1.03427 0.94357 0.94653 1.24538 0.95736 0.92802 1.00286 1.77387 1.21515 1.16350 0.95547 1.46087 1.40781 1.13954 1.17836 0.71157 1.22020 0.98855 0.94200 0.97661 1.21594 0.91693 1.00678 0.99870 1.21387 0.98544 0.84011 0.96770 0.92887 0.95905 0.95855 0.90280 0.90311 0.88629 0.91486 0.90242 0.90508 0.87576 0.87566 0.75210 0.77767 0.80237 0.90825 0.90897 0.91825 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.52 3.97 -27.89 -0.11 -2.63 16 11 C 0.51 9.70 7.69 -10.99 -0.08 9.61 16 12 O -0.53 -12.49 15.36 5.56 0.09 -12.41 16 13 N -0.62 -8.63 2.93 -173.03 -0.51 -9.14 16 14 C 0.11 1.11 6.32 -3.92 -0.02 1.08 16 15 C -0.10 -0.74 5.81 -26.70 -0.16 -0.90 16 16 C -0.09 -0.73 1.94 -154.49 -0.30 -1.03 16 17 C -0.13 -0.97 9.45 -26.79 -0.25 -1.22 16 18 C -0.19 -1.29 5.90 -91.85 -0.54 -1.83 16 19 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 20 C 0.55 5.03 6.06 -10.98 -0.07 4.96 16 21 O -0.53 -6.44 13.77 5.54 0.08 -6.36 16 22 N -0.64 -4.79 5.47 -10.03 -0.05 -4.84 16 23 C 0.00 0.02 6.90 -83.88 -0.58 -0.56 16 24 C 0.05 0.60 10.84 -17.23 -0.19 0.41 16 25 N -0.28 -3.09 12.69 30.70 0.39 -2.70 16 26 N -0.48 -3.43 7.40 30.69 0.23 -3.21 16 27 H 0.44 1.71 8.96 -182.62 -1.64 0.08 16 28 C 0.02 0.14 12.05 -16.68 -0.20 -0.06 16 29 C -0.10 -1.00 5.23 -26.47 -0.14 -1.14 16 30 C 0.12 1.44 6.44 -3.69 -0.02 1.42 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 33 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 34 H 0.08 1.42 7.88 -51.93 -0.41 1.01 16 35 H 0.08 1.39 7.73 -51.93 -0.40 0.99 16 36 H 0.10 0.96 5.86 -51.93 -0.30 0.65 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.11 0.92 7.93 -51.93 -0.41 0.51 16 42 H 0.41 1.97 8.83 -40.82 -0.36 1.61 16 43 H 0.21 2.41 5.92 -52.48 -0.31 2.10 16 44 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 45 H 0.07 0.77 7.36 -51.93 -0.38 0.38 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.09 1.39 6.96 -51.93 -0.36 1.02 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -37.65 393.89 -9.67 -47.32 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -8.34 Total: 0.02 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -3.20 Total: -4.48 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.79 Total: -46.34 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.16 Total: -18.77 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.65 -9.67 -47.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271767704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.455 kcal (2) G-P(sol) polarization free energy of solvation -37.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds